Rorug02G0211700

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000159
Physical Location & Seq
Forward (+)
19987119 .. 19989047
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0211700.1

Sequence Viewer

Length: 1929 bp
ATGAAGGACTTAAAATTCGAAGGTGATGCATTTCCATCATCGGGAGTTATCCAACTCACAAAGAATCAAGCTGATGGTCCCCTCACTAGTAGCACCGGTCGAGCCTCCTACGCCCTACCAGTGCGCCTTTGGGATGCCAGCACGGGGAGGCTCACTGACTTCACCACTCATTTTTCTTTTGTCATGAATGCCTTAAATAATAAATACTTTGGTGATGGTATATCTTTCTTCATTGCACCATTTGAGTCACAGATCCCCTCCAATTCGAGTGGTGGGTTTCTTGCACTAGTTAGCTATGATACTGCTTTTGATGCTTCCAGAAATAAATTTGTTGCTGTTGAGTTTGACAGTAATAACAACACATGGGATCCAATTGGTGATCATGTAGGAATTGATGTCAATTCCATTGTCTCGGTGACTAATGTCACATGGAAAACCACCATAAAAAATGGATCAGTAGCAAATGCATGGGTAAGTTATAACTCGACCACCCATAATTTGACTGTTTTTTTAACTTACGCCAAAAATCCTACCTTCACCGGTAGAGAATGTAGCCTTTCATACATAGTTGATTTGAGGAATGAGTTGCCTGAGAAAGTTAGAGTTGGTTTCTCTGCCGCCACGGGTGATTGGGTCGAAATACACAACATTAAGTCCTGGTCATTTAGTTCAAGCTTGGAGATTAATCATGGGGCAAAAAAAGTGAGGTTGGCAGCTGGTCTAGGCACTGGTTTCGGACTCTTGACTTGTGGACTAGGTCTGTTCTGGTTCATCACATGGAGAAAAAAGGCTGCCAAGAGAGATGACGATTATGACATGTCTATGGATGATGAATTTGACAAAGGAACAGGGCCACGGAGGTTCACTTACCGCGAAATAAGCCGTGCAACAAACAACTTTGCCGAAGGAGGGAAACTTGGCGAGGGAGGTTTTGGAGGTGTCTACAAGGGTTTGTTAAATGAATCCAACACAGAAGTTGCTGTCAAGAGGGTGTCTAGAACATCAAAGCAGGGGAAAAAGGAGTACGTGGCAGAAGTGAGGATCATCAGTCGACTAAGACACAGAAATTTGGTTCAACTAATTGGTTGGTGTCATGAACAAGGTGAGTTTCTTCTTGTGTATGAGATCATGCCAAATGGGAGTCTTGATTCCTATCTGTTTGGAATGAGCTACAGTCTAAGTTGGCCAGTGAGGTTCAAAATAGCACTTGGATTGGCCTCAGCCGTTTTGTACCTTCATGAGGAATGGGAACAATGTGTGGTGCATAGAGATATCAAGTCAAGCAATGTGATGTTGGATTCAAATTTCAATGCCAAGCTTGGAGATTTTGGGCTTGCAAGGCTTGTAGACCATGAGTTGGGTTCACAAACAACTGTTTTGGCAGGCACAATGGGTTATCTAGCCCCTGAGTGTGTTACTACTGGTAAAGCCAGCAAAGAATCTGATGTCTATAGTTTTGGGGTAGTTGCCCTTGAAATCAGTTGTGGAAGAAAACCAGTTGAAGCCAAAGCAGAACCAAGCAAAGTGAGGCTTGTGGAGTGGGTTTGGGATCTCTATGGAAAAGGCCAAATACTTCAAGCAGTTGACGAGAGGTTGAAAATGGAATTTGATGAGAAGGAAATCGAGTGCTTGATGGTGGTAGGGTTATGGTGTTGCCACCCTGATCCAAATGTCAGGCCTTCAATTAGGCAAGTGATCAATGTTCTTAGTTTTGAAGCTCCTATACCAAGCCTCCCAACAAAGTTGCCTGTGCCAATGTATTTTGCTCCTCCATTGGATATGTGTAGATTCTCCTATACATCATCTAACTTCACAGGGTCATCGGTTAAGGATCGATCTAAGTGTTCTTGTACTACTTGCTCTACATTCAATTCATCATCAGCAGGATCTTCAAAAGCTCTGTTGAAGCTGAATAAATCTGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

642

Amino Acids

70.99

Weight (kDa)

7.51

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 2 - 233 1.1e-66 Legume lectin domain
Pkinase PF00069 301 - 567 5.4e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 304 - 568 3.4e-50 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 1357
AccI GTMKAC 3 cut(s) 942, 1051, 1347
AccII CGCG 1 cut(s) 873
AciI CCGC 2 cut(s) 618, 871
AclWI GGATC 9 cut(s) 247, 362, 375, 460, 1049, 1557, 1658, 1839, 1894
AcoI YGGCCR 1 cut(s) 1184
AcsI RAATTY 6 cut(s) 14, 326, 833, 1066, 1303, 1604
AfaI GTAC 3 cut(s) 1025, 1232, 1852
AfiI CCNNNNNNNGG 5 cut(s) 41, 144, 909, 1240, 1357
AflIII ACRYGT 1 cut(s) 816
AgeI ACCGGT 2 cut(s) 95, 539
AhlI ACTAGT 2 cut(s) 86, 286
AjnI CCWGG 1 cut(s) 656
AluBI AGCT 9 cut(s) 71, 294, 675, 716, 1170, 1318, 1718, 1898, 1909
AluI AGCT 9 cut(s) 71, 294, 675, 716, 1170, 1318, 1718, 1898, 1909
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 9 cut(s) 247, 362, 375, 460, 1049, 1557, 1658, 1839, 1894
AoxI GGCC 5 cut(s) 851, 1184, 1215, 1564, 1676
ApeKI GCWGC 2 cut(s) 713, 791
ApoI RAATTY 6 cut(s) 14, 326, 833, 1066, 1303, 1604
ArsI GACNNNNNNTTYG 1 cut(s) 31
AseI ATTAAT 1 cut(s) 684
AsiGI ACCGGT 2 cut(s) 95, 539
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 77, 851
AsuHPI GGTGA 8 cut(s) 35, 154, 224, 389, 427, 529, 638, 1115
AsuII TTCGAA 1 cut(s) 18
AvaII GGWCC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 1186
BamHI GGATCC 1 cut(s) 367
BarI GAAGNNNNNNTAC 2 cut(s) 1707, 1739
BbvCI CCTCAGC 1 cut(s) 1219
BbvI GCAGC 2 cut(s) 725, 778
BccI CCATC 4 cut(s) 43, 68, 209, 1627
BceAI ACGGC 2 cut(s) 867, 1208
BcgI CGANNNNNNTGC 4 cut(s) 8, 42, 715, 749
BciT130I CCWGG 1 cut(s) 658
BclI TGATCA 2 cut(s) 379, 1695
BcoDI GTCTC 1 cut(s) 415
BcuI ACTAGT 2 cut(s) 86, 286
BfaI CTAG 6 cut(s) 87, 287, 722, 755, 996, 1400
BfmI CTRYAG 2 cut(s) 1171, 1450
BisI GCNGC 3 cut(s) 618, 714, 792
BlsI GCNGC 3 cut(s) 619, 715, 793
Bme1390I CCNGG 1 cut(s) 658
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 77, 851
BmiI GGNNCC 2 cut(s) 79, 369
BmrFI CCNGG 1 cut(s) 658
BmsI GCATC 3 cut(s) 16, 124, 301
BoxI GACNNNNGTC 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 1219
Bpu14I TTCGAA 1 cut(s) 18
Bsa29I ATCGAT 1 cut(s) 1834
BsaAI YACGTR 1 cut(s) 1027
BsaBI GATNNNNATC 1 cut(s) 1152
BsaJI CCNNGG 2 cut(s) 621, 854
BsaWI WCCGGW 2 cut(s) 95, 539
BsaXI ACNNNNNCTCC 2 cut(s) 1716, 1746
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 144, 909, 1240, 1357
Bse118I RCCGGY 2 cut(s) 95, 539
Bse1I ACTGG 5 cut(s) 119, 733, 1187, 1426, 1496
Bse3DI GCAATG 2 cut(s) 231, 1291
Bse8I GATNNNNATC 1 cut(s) 1152
BseBI CCWGG 1 cut(s) 658
BseCI ATCGAT 1 cut(s) 1834
BseDI CCNNGG 2 cut(s) 621, 854
BseGI GGATG 2 cut(s) 139, 832
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 5 cut(s) 41, 144, 909, 1240, 1357
BseMI GCAATG 2 cut(s) 231, 1291
BseMII CTCAG 3 cut(s) 582, 1233, 1398
BseNI ACTGG 5 cut(s) 119, 733, 1187, 1426, 1496
BseRI GAGGAG 1 cut(s) 1758
BseXI GCAGC 2 cut(s) 725, 778
Bsh1236I CGCG 1 cut(s) 873
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 5 cut(s) 853, 1186, 1217, 1566, 1678
BshTI ACCGGT 2 cut(s) 95, 539
BshVI ATCGAT 1 cut(s) 1834
BsiEI CGRYCG 1 cut(s) 100
BsiSI CCGG 2 cut(s) 96, 540
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 5 cut(s) 41, 144, 909, 1240, 1357
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 5 cut(s) 853, 1186, 1217, 1566, 1678
Bsp119I TTCGAA 1 cut(s) 18
BspACI CCGC 2 cut(s) 618, 871
BspANI GGCC 5 cut(s) 853, 1186, 1217, 1566, 1678
BspCNI CTCAG 3 cut(s) 583, 1232, 1399
BspDI ATCGAT 1 cut(s) 1834
BspFNI CGCG 1 cut(s) 873
BspHI TCATGA 3 cut(s) 183, 1093, 1237
BspLI GGNNCC 2 cut(s) 79, 369
BspPI GGATC 9 cut(s) 247, 362, 375, 460, 1049, 1557, 1658, 1839, 1894
BspT104I TTCGAA 1 cut(s) 18
BsrDI GCAATG 2 cut(s) 231, 1291
BsrFI RCCGGY 2 cut(s) 95, 539
BsrI ACTGG 5 cut(s) 119, 733, 1187, 1426, 1496
BssAI RCCGGY 2 cut(s) 95, 539
BssECI CCNNGG 2 cut(s) 621, 854
Bst2UI CCWGG 1 cut(s) 658
Bst4CI ACNGT 4 cut(s) 350, 505, 1175, 1375
BstBAI YACGTR 1 cut(s) 1027
BstBI TTCGAA 1 cut(s) 18
BstC8I GCNNGC 4 cut(s) 139, 1335, 1384, 1432
BstDEI CTNAG 7 cut(s) 591, 1055, 1178, 1219, 1407, 1706, 1839
BstDSI CCRYGG 2 cut(s) 621, 854
BstENI CCTNNNNNAGG 1 cut(s) 1238
BstF5I GGATG 2 cut(s) 139, 832
BstFNI CGCG 1 cut(s) 873
BstHHI GCGC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 415
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 4 cut(s) 110, 311, 879, 1339
BstNI CCWGG 1 cut(s) 658
BstNSI RCATGY 1 cut(s) 820
BstPAI GACNNNNGTC 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 656
BstSFI CTRYAG 2 cut(s) 1171, 1450
BstUI CGCG 1 cut(s) 873
BstV1I GCAGC 2 cut(s) 725, 778
BstX2I RGATCY 4 cut(s) 252, 367, 1549, 1886
BstYI RGATCY 4 cut(s) 252, 367, 1549, 1886
Bsu15I ATCGAT 1 cut(s) 1834
BsuRI GGCC 5 cut(s) 853, 1186, 1217, 1566, 1678
BsuTUI ATCGAT 1 cut(s) 1834
BtgI CCRYGG 2 cut(s) 621, 854
BtsCI GGATG 2 cut(s) 139, 832
BtsIMutI CAGTG 4 cut(s) 126, 153, 726, 1194
Cac8I GCNNGC 4 cut(s) 139, 1335, 1384, 1432
CciI TCATGA 3 cut(s) 183, 1093, 1237
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 2 cut(s) 95, 539
Cfr13I GGNCC 2 cut(s) 77, 851
ClaI ATCGAT 1 cut(s) 1834
Csp6I GTAC 3 cut(s) 1024, 1231, 1851
CspAI ACCGGT 2 cut(s) 95, 539
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviQI GTAC 3 cut(s) 1024, 1231, 1851
DdeI CTNAG 7 cut(s) 591, 1055, 1178, 1219, 1407, 1706, 1839
EaeI YGGCCR 1 cut(s) 1184
Eco147I AGGCCT 1 cut(s) 1678
Eco32I GATATC 1 cut(s) 1273
Eco47I GGWCC 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 1238
EcoRII CCWGG 1 cut(s) 656
EcoRV GATATC 1 cut(s) 1273
EcoT22I ATGCAT 2 cut(s) 31, 469
FalI AAGNNNNNCTT 2 cut(s) 1515, 1547
FaqI GGGAC 1 cut(s) 63
FbaI TGATCA 2 cut(s) 379, 1695
FblI GTMKAC 3 cut(s) 942, 1051, 1347
Fnu4HI GCNGC 3 cut(s) 618, 714, 792
FokI GGATG 2 cut(s) 146, 839
Fsp4HI GCNGC 3 cut(s) 618, 714, 792
FspBI CTAG 6 cut(s) 87, 287, 722, 755, 996, 1400
GlaI GCGC 1 cut(s) 125
GluI GCNGC 3 cut(s) 618, 714, 792
HaeIII GGCC 5 cut(s) 853, 1186, 1217, 1566, 1678
HapII CCGG 2 cut(s) 96, 540
HhaI GCGC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 2 cut(s) 1052, 1585
HindII GTYRAC 2 cut(s) 1052, 1585
HindIII AAGCTT 2 cut(s) 673, 1316
HinfI GANTC 9 cut(s) 64, 245, 738, 962, 1141, 1148, 1298, 1439, 1788
HpaII CCGG 2 cut(s) 96, 540
HphI GGTGA 8 cut(s) 35, 154, 224, 389, 427, 529, 638, 1115
Hpy166II GTNNAC 7 cut(s) 752, 864, 943, 1052, 1348, 1364, 1585
Hpy188I TCNGA 2 cut(s) 737, 1444
Hpy188III TCNNGA 9 cut(s) 42, 184, 318, 742, 985, 996, 1094, 1145, 1238
Hpy8I GTNNAC 7 cut(s) 752, 864, 943, 1052, 1348, 1364, 1585
HpyAV CCTTC 6 cut(s) 14, 544, 899, 1244, 1609, 1689
HpyCH4III ACNGT 4 cut(s) 350, 505, 1175, 1375
HpyCH4IV ACGT 1 cut(s) 1026
HpyCH4V TGCA 8 cut(s) 29, 236, 284, 467, 887, 1264, 1337, 1925
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 311, 879, 1339
HpyF3I CTNAG 7 cut(s) 591, 1055, 1178, 1219, 1407, 1706, 1839
HpySE526I ACGT 1 cut(s) 1026
HspAI GCGC 1 cut(s) 124
Ksp22I TGATCA 2 cut(s) 379, 1695
LmnI GCTCC 2 cut(s) 1723, 1771
Lsp1109I GCAGC 2 cut(s) 725, 778
LweI GCATC 3 cut(s) 16, 124, 301
MaeI CTAG 6 cut(s) 87, 287, 722, 755, 996, 1400
MaeII ACGT 1 cut(s) 1026
MaeIII GTNAC 4 cut(s) 246, 415, 424, 1414
MboII GAAGA 4 cut(s) 220, 1103, 1500, 1881
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 4 cut(s) 252, 367, 1549, 1886
MlsI TGGCCA 1 cut(s) 1186
MluNI TGGCCA 1 cut(s) 1186
MlyI GAGTC 3 cut(s) 254, 732, 1150
MmeI TCCRAC 3 cut(s) 76, 990, 1275
Mox20I TGGCCA 1 cut(s) 1186
Mph1103I ATGCAT 2 cut(s) 31, 469
MscI TGGCCA 1 cut(s) 1186
MseI TTAA 7 cut(s) 11, 194, 512, 651, 684, 956, 1827
MslI CAYNNNNRTG 1 cut(s) 821
Msp20I TGGCCA 1 cut(s) 1186
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 2 cut(s) 96, 540
MspR9I CCNGG 1 cut(s) 658
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 658
MvnI CGCG 1 cut(s) 873
MwoI GCNNNNNNNGC 4 cut(s) 110, 311, 879, 1339
NlaIV GGNNCC 2 cut(s) 79, 369
NmuCI GTSAC 3 cut(s) 246, 415, 424
NsiI ATGCAT 2 cut(s) 31, 469
NspI RCATGY 1 cut(s) 820
NspV TTCGAA 1 cut(s) 18
PagI TCATGA 3 cut(s) 183, 1093, 1237
PceI AGGCCT 1 cut(s) 1678
PciI ACATGT 1 cut(s) 816
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 6 cut(s) 64, 962, 1148, 1298, 1439, 1788
PflFI GACNNNGTC 1 cut(s) 756
PflMI CCANNNNNTGG 1 cut(s) 1357
PinAI ACCGGT 2 cut(s) 95, 539
PkrI GCNGC 3 cut(s) 619, 715, 793
PleI GAGTC 3 cut(s) 253, 732, 1149
PpsI GAGTC 3 cut(s) 253, 732, 1149
Ppu21I YACGTR 1 cut(s) 1027
PscI ACATGT 1 cut(s) 816
PshAI GACNNNNGTC 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 684
PsiI TTATAA 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 656
PspGI CCWGG 1 cut(s) 656
PspN4I GGNNCC 2 cut(s) 79, 369
PspPI GGNCC 2 cut(s) 77, 851
PsuI RGATCY 4 cut(s) 252, 367, 1549, 1886
PsyI GACNNNGTC 1 cut(s) 756
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 3 cut(s) 1025, 1232, 1852
RsaNI GTAC 3 cut(s) 1024, 1231, 1851
RseI CAYNNNNRTG 1 cut(s) 821
SalI GTCGAC 1 cut(s) 1050
SaqAI TTAA 7 cut(s) 11, 194, 512, 651, 684, 956, 1827
SatI GCNGC 3 cut(s) 618, 714, 792
Sau96I GGNCC 2 cut(s) 77, 851
SchI GAGTC 3 cut(s) 254, 732, 1150
ScrFI CCNGG 1 cut(s) 658
SfaNI GCATC 3 cut(s) 16, 124, 301
SfcI CTRYAG 2 cut(s) 1171, 1450
SfuI TTCGAA 1 cut(s) 18
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 821
SpeI ACTAGT 2 cut(s) 86, 286
SseBI AGGCCT 1 cut(s) 1678
SsiI CCGC 2 cut(s) 618, 871
SspMI CTAG 6 cut(s) 87, 287, 722, 755, 996, 1400
StuI AGGCCT 1 cut(s) 1678
StyD4I CCNGG 1 cut(s) 656
TaaI ACNGT 4 cut(s) 350, 505, 1175, 1375
TaiI ACGT 1 cut(s) 1029
TaqI TCGA 8 cut(s) 18, 100, 266, 485, 636, 1051, 1623, 1834
TatI WGTACW 1 cut(s) 1850
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 6 cut(s) 64, 962, 1148, 1298, 1439, 1788
Tru1I TTAA 7 cut(s) 11, 194, 512, 651, 684, 956, 1827
Tru9I TTAA 7 cut(s) 11, 194, 512, 651, 684, 956, 1827
TscAI CASTG 4 cut(s) 126, 160, 733, 1194
TseFI GTSAC 3 cut(s) 246, 415, 424
TseI GCWGC 2 cut(s) 713, 791
Tsp45I GTSAC 3 cut(s) 246, 415, 424
TspGWI ACGGA 1 cut(s) 871
TspRI CASTG 4 cut(s) 126, 160, 733, 1194
Tth111I GACNNNGTC 1 cut(s) 756
Van91I CCANNNNNTGG 1 cut(s) 1357
VpaK11BI GGWCC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 684
XagI CCTNNNNNAGG 1 cut(s) 1238
XapI RAATTY 6 cut(s) 14, 326, 833, 1066, 1303, 1604
XbaI TCTAGA 1 cut(s) 995
XceI RCATGY 1 cut(s) 820
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmiI GTMKAC 3 cut(s) 942, 1051, 1347
XspI CTAG 6 cut(s) 87, 287, 722, 755, 996, 1400
Zsp2I ATGCAT 2 cut(s) 31, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.