Rmu_sc0002009.1_g000024

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002009.1
OG0000159
Physical Location & Seq
Forward (+)
146902 .. 148173
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002009.1_g000024.1.cds

Sequence Viewer

Length: 1272 bp
atgttggttccattgtggacgacacaaggctacctcaagacatctaagaaaaatgaagattttgaacagttgggtttagactatataagggagttttgttctagatccttgtttcaagtcgagtgggatctcaaaacagccataacttttaaaatacatgatctagttcatgatttagcaatttcagtggcacaagtagagtactccacagtcaattgtcgtccctctagtgcttttgaaatggttcgacatgtgtcaatatcggaaaaagacttgcttggagaagaggcacaagttcccgatttcatgctcaagtcaaagaaattacgaaccattctagttcctaaaggtggtcagatgagtcaacgttttgtgaaaacatgcatcttaagattcaaatatatgcgggtgctagatctcagtgggtcgcctcttgaagagctaccaagttccattggtagtttgtttcatttgagatttctcaacttggcttgtaatagtaagataaaaaggcttcccaattccatccgtaagctgctgaatttggagtacttggaccttgaggattgcaacgcacttgaggaaatacccaaagacatagggaacctgatcaacctacgaagtttgatgataacaacacagcagacgtatttgccaaaaggaattagacacctcaccttacttcaacatttagaatttgatggatgtgtcaatcttaaatctttgggcaaagagatcgaattcctcaacaaccttcgcaaattgttgattagcggttgtaataatttggaatgcttgccaccaaatatgaaatacatgaccgctttagatactttcgctgtaagagattgtgagaagcttcaggtgatgagatcaggggaaggtcctcaacgtcttcgatcaatcggtattgagaaatcaaatatggaggctttgcccccttggctcattgaagattctgcagacactctacagtgcatagtacttaatggatgtgataatctcacggcacttccggagttgataaacttcacattcctcgagcaactatacattgaagaatgctccaaattgtcggctttgccgcaagggttgcattgccttactgagttgagagaattgaagattctaaagtgtcctgaattgagcaaaagctgcagaaggcaattaaaaggtgaggagtggtcaaagatggcacgtcaggcgaagattacactagactctgatgatgatgaagaagacgaagatgaaggtacaccaatgatggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

423

Amino Acids

48.38

Weight (kDa)

5.52

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1015
AciI CCGC 4 cut(s) 406, 774, 822, 1085
AclI AACGTT 1 cut(s) 367
AclWI GGATC 2 cut(s) 99, 135
AcsI RAATTY 3 cut(s) 541, 695, 740
AcuI CTGAAG 1 cut(s) 845
AfaI GTAC 4 cut(s) 203, 551, 984, 1255
AfiI CCNNNNNNNGG 1 cut(s) 350
AflII CTTAAG 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 9 cut(s) 65, 116, 239, 397, 437, 686, 953, 1058, 1123
AjiI CACGTC 1 cut(s) 1199
AluBI AGCT 4 cut(s) 442, 535, 859, 1155
AluI AGCT 4 cut(s) 442, 535, 859, 1155
AlwI GGATC 2 cut(s) 99, 135
Ama87I CYCGRG 1 cut(s) 1040
Aor13HI TCCGGA 1 cut(s) 1015
ApeKI GCWGC 2 cut(s) 535, 1155
ApoI RAATTY 3 cut(s) 541, 695, 740
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 556, 884
AsuHPI GGTGA 3 cut(s) 667, 877, 1187
AvaI CYCGRG 1 cut(s) 1040
AvaII GGWCC 2 cut(s) 556, 884
BbsI GAAGAC 2 cut(s) 887, 1245
BbvI GCAGC 2 cut(s) 522, 1142
BccI CCATC 4 cut(s) 533, 695, 1186, 1258
BceAI ACGGC 1 cut(s) 1023
BcgI CGANNNNNNTGC 2 cut(s) 718, 752
BclI TGATCA 1 cut(s) 609
BfaI CTAG 6 cut(s) 102, 164, 228, 338, 413, 1217
BfmI CTRYAG 3 cut(s) 960, 971, 1156
BfrI CTTAAG 1 cut(s) 388
BglI GCCNNNNNGGC 1 cut(s) 943
BglII AGATCT 1 cut(s) 415
BisI GCNGC 3 cut(s) 536, 1085, 1156
BlsI GCNGC 3 cut(s) 537, 1086, 1157
BmcAI AGTACT 3 cut(s) 203, 551, 984
Bme18I GGWCC 2 cut(s) 556, 884
BmeT110I CYCGRG 1 cut(s) 1040
BmgBI CACGTC 1 cut(s) 1199
BmgT120I GGNCC 2 cut(s) 556, 884
BmiI GGNNCC 2 cut(s) 9, 605
BmsI GCATC 1 cut(s) 393
BoxI GACNNNNGTC 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 887, 1245
BpuEI CTTGAG 4 cut(s) 20, 296, 581, 599
BsaJI CCNNGG 1 cut(s) 941
BsaWI WCCGGW 1 cut(s) 1015
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 1096
BseAI TCCGGA 1 cut(s) 1015
BseDI CCNNGG 1 cut(s) 941
BseGI GGATG 3 cut(s) 525, 710, 998
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 1096
BseMII CTCAG 2 cut(s) 433, 1098
BseRI GAGGAG 1 cut(s) 1193
BseXI GCAGC 2 cut(s) 522, 1142
BsiHKCI CYCGRG 1 cut(s) 1040
BsiSI CCGG 1 cut(s) 1016
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 207
BsmI GAATGC 2 cut(s) 797, 1067
BsoBI CYCGRG 1 cut(s) 1040
Bsp13I TCCGGA 1 cut(s) 1015
Bsp143I GATC 8 cut(s) 104, 127, 160, 415, 609, 735, 872, 899
BspACI CCGC 4 cut(s) 406, 774, 822, 1085
BspCNI CTCAG 2 cut(s) 432, 1099
BspEI TCCGGA 1 cut(s) 1015
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 9, 605
BspMAI CTGCAG 2 cut(s) 964, 1160
BspPI GGATC 2 cut(s) 99, 135
BspQI GCTCTTC 1 cut(s) 432
BspTI CTTAAG 1 cut(s) 388
BsrDI GCAATG 1 cut(s) 1096
BssECI CCNNGG 1 cut(s) 941
BssMI GATC 8 cut(s) 104, 127, 160, 415, 609, 735, 872, 899
BssT1I CCWWGG 1 cut(s) 941
Bst4CI ACNGT 3 cut(s) 69, 211, 975
Bst6I CTCTTC 2 cut(s) 279, 432
BstAFI CTTAAG 1 cut(s) 388
BstAPI GCANNNNNTGC 2 cut(s) 1093, 1155
BstC8I GCNNGC 1 cut(s) 797
BstDEI CTNAG 3 cut(s) 45, 419, 1107
BstF5I GGATG 3 cut(s) 525, 710, 998
BstKTI GATC 8 cut(s) 107, 130, 163, 418, 612, 738, 875, 902
BstMBI GATC 8 cut(s) 104, 127, 160, 415, 609, 735, 872, 899
BstMWI GCNNNNNNNGC 4 cut(s) 943, 1093, 1155, 1202
BstNSI RCATGY 2 cut(s) 254, 384
BstPAI GACNNNNGTC 1 cut(s) 253
BstSFI CTRYAG 3 cut(s) 960, 971, 1156
BstV1I GCAGC 2 cut(s) 522, 1142
BstV2I GAAGAC 2 cut(s) 887, 1245
BstX2I RGATCY 3 cut(s) 104, 127, 415
BstYI RGATCY 3 cut(s) 104, 127, 415
BtrI CACGTC 1 cut(s) 1199
BtsCI GGATG 3 cut(s) 525, 710, 998
BtsIMutI CAGTG 3 cut(s) 192, 427, 980
Cac8I GCNNGC 1 cut(s) 797
CciI TCATGA 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 556, 884
Csp6I GTAC 4 cut(s) 202, 550, 983, 1254
CspCI CAANNNNNGTGG 4 cut(s) 104, 139, 168, 203
CviAII CATG 6 cut(s) 158, 170, 251, 307, 381, 817
CviQI GTAC 4 cut(s) 202, 550, 983, 1254
DdeI CTNAG 3 cut(s) 45, 419, 1107
DpnI GATC 8 cut(s) 106, 129, 162, 417, 611, 737, 874, 901
DpnII GATC 8 cut(s) 104, 127, 160, 415, 609, 735, 872, 899
DraI TTTAAA 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 279, 432
EarI CTCTTC 2 cut(s) 279, 432
Eco130I CCWWGG 1 cut(s) 941
Eco47I GGWCC 2 cut(s) 556, 884
Eco57I CTGAAG 1 cut(s) 845
Eco88I CYCGRG 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 884
EcoRI GAATTC 1 cut(s) 740
EcoT14I CCWWGG 1 cut(s) 941
EcoT22I ATGCAT 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 6 cut(s) 161, 173, 254, 310, 384, 820
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 1 cut(s) 207
FatI CATG 6 cut(s) 157, 169, 250, 306, 380, 816
FauI CCCGC 1 cut(s) 399
FbaI TGATCA 1 cut(s) 609
Fnu4HI GCNGC 3 cut(s) 536, 1085, 1156
FokI GGATG 3 cut(s) 512, 717, 1005
Fsp4HI GCNGC 3 cut(s) 536, 1085, 1156
FspBI CTAG 6 cut(s) 102, 164, 228, 338, 413, 1217
GluI GCNGC 3 cut(s) 536, 1085, 1156
HapII CCGG 1 cut(s) 1016
Hin1II CATG 6 cut(s) 161, 173, 254, 310, 384, 820
HincII GTYRAC 1 cut(s) 365
HindII GTYRAC 1 cut(s) 365
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 5 cut(s) 361, 393, 956, 1126, 1220
HpaII CCGG 1 cut(s) 1016
HphI GGTGA 3 cut(s) 667, 877, 1187
Hpy166II GTNNAC 3 cut(s) 18, 365, 1256
Hpy188I TCNGA 3 cut(s) 265, 357, 1225
Hpy188III TCNNGA 7 cut(s) 37, 102, 170, 299, 434, 1016, 1139
Hpy8I GTNNAC 3 cut(s) 18, 365, 1256
HpyAV CCTTC 4 cut(s) 764, 875, 1155, 1244
HpyCH4III ACNGT 3 cut(s) 69, 211, 975
HpyCH4IV ACGT 4 cut(s) 367, 647, 892, 1198
HpyCH4V TGCA 6 cut(s) 384, 570, 962, 978, 1096, 1158
HpyF10VI GCNNNNNNNGC 4 cut(s) 943, 1093, 1155, 1202
HpyF3I CTNAG 3 cut(s) 45, 419, 1107
HpySE526I ACGT 4 cut(s) 367, 647, 892, 1198
Hsp92II CATG 6 cut(s) 161, 173, 254, 310, 384, 820
Kpn2I TCCGGA 1 cut(s) 1015
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 8 cut(s) 104, 127, 160, 415, 609, 735, 872, 899
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 1 cut(s) 1070
LpnPI CCDG 6 cut(s) 620, 848, 861, 1029, 1152, 1187
Lsp1109I GCAGC 2 cut(s) 522, 1142
LweI GCATC 1 cut(s) 393
MaeI CTAG 6 cut(s) 102, 164, 228, 338, 413, 1217
MaeII ACGT 4 cut(s) 367, 647, 892, 1198
MalI GATC 8 cut(s) 106, 129, 162, 417, 611, 737, 874, 901
MboI GATC 8 cut(s) 104, 127, 160, 415, 609, 735, 872, 899
MfeI CAATTG 1 cut(s) 214
MflI RGATCY 3 cut(s) 104, 127, 415
MlyI GAGTC 2 cut(s) 370, 1214
Mph1103I ATGCAT 1 cut(s) 386
MroI TCCGGA 1 cut(s) 1015
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 5 cut(s) 150, 389, 717, 987, 1169
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 1 cut(s) 1016
MunI CAATTG 1 cut(s) 214
Mva1269I GAATGC 2 cut(s) 797, 1067
MwoI GCNNNNNNNGC 4 cut(s) 943, 1093, 1155, 1202
NdeII GATC 8 cut(s) 104, 127, 160, 415, 609, 735, 872, 899
NlaIII CATG 6 cut(s) 161, 173, 254, 310, 384, 820
NlaIV GGNNCC 2 cut(s) 9, 605
NsiI ATGCAT 1 cut(s) 386
NspI RCATGY 2 cut(s) 254, 384
PaeR7I CTCGAG 1 cut(s) 1040
PagI TCATGA 1 cut(s) 169
PciI ACATGT 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 432
PctI GAATGC 2 cut(s) 797, 1067
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 3 cut(s) 393, 956, 1126
PkrI GCNGC 3 cut(s) 537, 1086, 1157
PleI GAGTC 2 cut(s) 369, 1214
PpsI GAGTC 2 cut(s) 369, 1214
PpuMI RGGWCCY 1 cut(s) 884
PscI ACATGT 1 cut(s) 250
PshAI GACNNNNGTC 1 cut(s) 253
Psp1406I AACGTT 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 884
PspN4I GGNNCC 2 cut(s) 9, 605
PspPI GGNCC 2 cut(s) 556, 884
PspPPI RGGWCCY 1 cut(s) 884
PspXI VCTCGAGB 1 cut(s) 1040
PstI CTGCAG 2 cut(s) 964, 1160
PsuI RGATCY 3 cut(s) 104, 127, 415
RsaI GTAC 4 cut(s) 203, 551, 984, 1255
RsaNI GTAC 4 cut(s) 202, 550, 983, 1254
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 5 cut(s) 150, 389, 717, 987, 1169
SatI GCNGC 3 cut(s) 536, 1085, 1156
Sau3AI GATC 8 cut(s) 104, 127, 160, 415, 609, 735, 872, 899
Sau96I GGNCC 2 cut(s) 556, 884
ScaI AGTACT 3 cut(s) 203, 551, 984
SchI GAGTC 2 cut(s) 370, 1214
SfaNI GCATC 1 cut(s) 393
SfcI CTRYAG 3 cut(s) 960, 971, 1156
Sfr274I CTCGAG 1 cut(s) 1040
SinI GGWCC 2 cut(s) 556, 884
SlaI CTCGAG 1 cut(s) 1040
SmlI CTYRAG 6 cut(s) 35, 311, 388, 560, 578, 1040
SmoI CTYRAG 6 cut(s) 35, 311, 388, 560, 578, 1040
SsiI CCGC 4 cut(s) 406, 774, 822, 1085
SspMI CTAG 6 cut(s) 102, 164, 228, 338, 413, 1217
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 3 cut(s) 69, 211, 975
TaiI ACGT 4 cut(s) 370, 650, 895, 1201
TaqI TCGA 5 cut(s) 120, 247, 738, 898, 1041
TatI WGTACW 3 cut(s) 201, 549, 982
TauI GCSGC 1 cut(s) 1087
TfiI GAWTC 3 cut(s) 393, 956, 1126
Tru1I TTAA 5 cut(s) 150, 389, 717, 987, 1169
Tru9I TTAA 5 cut(s) 150, 389, 717, 987, 1169
TscAI CASTG 3 cut(s) 192, 427, 980
TseI GCWGC 2 cut(s) 535, 1155
TspDTI ATGAA 7 cut(s) 69, 158, 295, 458, 824, 1248, 1263
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 3 cut(s) 192, 427, 980
Vha464I CTTAAG 1 cut(s) 388
VpaK11BI GGWCC 2 cut(s) 556, 884
XapI RAATTY 3 cut(s) 541, 695, 740
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 2 cut(s) 254, 384
XhoI CTCGAG 1 cut(s) 1040
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 6 cut(s) 102, 164, 228, 338, 413, 1217
ZrmI AGTACT 3 cut(s) 203, 551, 984
Zsp2I ATGCAT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.