Rmu_sc0004942.1_g000015

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004942.1
OG0000159
Physical Location & Seq
Forward (+)
55854 .. 56351
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004942.1_g000015.1.cds

Sequence Viewer

Length: 498 bp
atgaagcacatgaccgctttacatagtttgggtgtccatgattgcccgatggttcaggtgatgatgagatcaggggaaggtcctcaaggtcttcgatcattgattatcgggaattcaagtttggaggctttgcctccttggctcactgaagattctgcagacactctacagagcatagcacttagtggatgtcataatctcacggcacttccggagttgctgaacttcagattcctcgagcaactacacattctacaatgctccaaattgtcggctttgccgcaggggttgcattgccttactgagttgagagaactgaacattggatggtgtcctgaattgagcaaaagctgcaaaaggcaattaaaaggtgaggagtggtcaaagatggcacgtcaggtgaagattacactcgacgactctgatgatggagaagatgaagccaacaatcgcttggccgacggtaggatcgcgtaccacacgcgacaacgccgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

165

Amino Acids

18.51

Weight (kDa)

6.15

Isoelectric Point (pI)

62.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 473, 484
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 2 cut(s) 15, 281
AclWI GGATC 1 cut(s) 476
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 168, 211
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 465
AgsI TTSAA 1 cut(s) 117
AjiI CACGTC 1 cut(s) 395
AjuI GAANNNNNNNTTGG 4 cut(s) 104, 136, 306, 338
AluBI AGCT 1 cut(s) 351
AluI AGCT 1 cut(s) 351
AlwI GGATC 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 1 cut(s) 351
ApoI RAATTY 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 70, 383, 412
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 338
BccI CCATC 4 cut(s) 43, 321, 382, 422
BceAI ACGGC 2 cut(s) 219, 477
BfmI CTRYAG 2 cut(s) 156, 167
BglI GCCNNNNNGGC 1 cut(s) 139
BisI GCNGC 2 cut(s) 281, 352
BlsI GCNGC 2 cut(s) 282, 353
Bme18I GGWCC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 292
BseAI TCCGGA 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 194, 332
BseLI CCNNNNNNNGG 1 cut(s) 465
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 1 cut(s) 338
Bsh1236I CGCG 2 cut(s) 473, 484
BshFI GGCC 1 cut(s) 458
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 465
BsnI GGCC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 236
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 68, 95, 468
BspACI CCGC 2 cut(s) 15, 281
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 211
BspFNI CGCG 2 cut(s) 473, 484
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 3 cut(s) 68, 95, 468
BssT1I CCWWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 464
BstAPI GCANNNNNTGC 2 cut(s) 289, 351
BstDEI CTNAG 2 cut(s) 182, 303
BstF5I GGATG 2 cut(s) 194, 332
BstFNI CGCG 2 cut(s) 473, 484
BstKTI GATC 3 cut(s) 71, 98, 471
BstMBI GATC 3 cut(s) 68, 95, 468
BstMWI GCNNNNNNNGC 3 cut(s) 139, 289, 351
BstSFI CTRYAG 2 cut(s) 156, 167
BstUI CGCG 2 cut(s) 473, 484
BstV1I GCAGC 1 cut(s) 338
BstV2I GAAGAC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 458
BtrI CACGTC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 194, 332
BtsIMutI CAGTG 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 475
CviAII CATG 2 cut(s) 10, 38
CviJI RGCY 6 cut(s) 128, 142, 275, 351, 443, 458
CviKI_1 RGCY 6 cut(s) 128, 142, 275, 351, 443, 458
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 2 cut(s) 182, 303
DpnI GATC 3 cut(s) 70, 97, 470
DpnII GATC 3 cut(s) 68, 95, 468
DraIII CACNNNGTG 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 168, 211
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 2 cut(s) 13, 41
FaiI YATR 5 cut(s) 11, 24, 39, 176, 195
FatI CATG 2 cut(s) 9, 37
Fnu4HI GCNGC 2 cut(s) 281, 352
FokI GGATG 2 cut(s) 201, 339
Fsp4HI GCNGC 2 cut(s) 281, 352
GluI GCNGC 2 cut(s) 281, 352
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 212
Hin1II CATG 2 cut(s) 13, 41
HinfI GANTC 3 cut(s) 152, 231, 419
HpaII CCGG 1 cut(s) 212
HphI GGTGA 3 cut(s) 70, 383, 412
Hpy188I TCNGA 2 cut(s) 230, 424
Hpy188III TCNNGA 3 cut(s) 109, 212, 335
Hpy99I CGWCG 2 cut(s) 419, 464
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 3 cut(s) 158, 292, 354
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 289, 351
HpyF3I CTNAG 2 cut(s) 182, 303
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 2 cut(s) 13, 41
Kpn2I TCCGGA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 68, 95, 468
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 6 cut(s) 41, 57, 225, 269, 348, 383
Lsp1109I GCAGC 1 cut(s) 338
MaeII ACGT 1 cut(s) 394
MalI GATC 3 cut(s) 70, 97, 470
MboI GATC 3 cut(s) 68, 95, 468
MboII GAAGA 4 cut(s) 83, 161, 415, 446
MluCI AATT 4 cut(s) 112, 266, 338, 362
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 5 cut(s) 93, 118, 144, 245, 367
MroI TCCGGA 1 cut(s) 211
MseI TTAA 1 cut(s) 365
MspI CCGG 1 cut(s) 212
MvnI CGCG 2 cut(s) 473, 484
MwoI GCNNNNNNNGC 3 cut(s) 139, 289, 351
NdeII GATC 3 cut(s) 68, 95, 468
NlaIII CATG 2 cut(s) 13, 41
PaeR7I CTCGAG 1 cut(s) 236
PfeI GAWTC 2 cut(s) 152, 231
PkrI GCNGC 2 cut(s) 282, 353
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PpuMI RGGWCCY 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 80
PspPI GGNCC 1 cut(s) 80
PspPPI RGGWCCY 1 cut(s) 80
PspXI VCTCGAGB 1 cut(s) 236
PstI CTGCAG 1 cut(s) 160
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 2 cut(s) 281, 352
Sau3AI GATC 3 cut(s) 68, 95, 468
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 413
SetI ASST 7 cut(s) 60, 82, 91, 353, 373, 397, 402
SfcI CTRYAG 2 cut(s) 156, 167
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 80
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 84, 236
SmoI CTYRAG 2 cut(s) 84, 236
Sse9I AATT 4 cut(s) 112, 266, 338, 362
SsiI CCGC 2 cut(s) 15, 281
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 397
TaqI TCGA 3 cut(s) 94, 237, 414
TasI AATT 4 cut(s) 112, 266, 338, 362
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 2 cut(s) 152, 231
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 351
TspDTI ATGAA 2 cut(s) 17, 453
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XhoI CTCGAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.