RLG00000021097

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000159
Physical Location & Seq
Reverse (-)
71935023 .. 71937055
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021097

Sequence Viewer

Length: 1104 bp
ATGGTGTACGATGTTAATGTGGTGAAAGAAAACTTCGAGATGAGAATGTGGATATGTGTCTCAGATCATTTTGATAACAAAAAATTGGTTCGTGATATTATTAGTGCTGCAACTAAGCAAAAATGCGAAGAAGTAAGTTTGGATCTTATGAAGACATGGTTGCAAGATAATTTGAGAGGTAAAAGGTTTTTATTAGTCCTGGATGATATTTGGGATACAGATTCAACCGGGGTGACAACTCAAAAATGGATTGAGTTAAAAACTTTGTTCAATGTTGGAACCATTGGGAGTAAAATCATCATTACAACACGCAATGAATTTGCTTCACATAAGTGTGGAGGGCTTCCCTTAGCATTAGCTACTCTAGCGAGTATGCTCTACTCAAAAACGGACCAACGCCATTGGTTACATTTGAAGAAATTACGGACCATTCTAAATCTAGATGGAGAAGGTGGGATCTCGAATCAATATTTCTTAAGGACATGCATTTCAAGATTCAAGTATATGCGTGCACTAAATGTGCATTTGTCAACCGCTGAGGAGCTACCAAGTTCCATTGGTAACTTGAGTCATTTGAGATACCTCAACCTTGATCGTAGTACAATGATTAAAAAGCTTCCCACTTCCATTTGTAAGCTATTCAATTTGCAGTTCTTAAACCTGGGAGGTTGTGAGGCACTTGAGGAGCTACCCAAAGACATAGGGAACTTGATCAATGTCAGATTCTTGACCTTAACTACACAGCAGAGTCTGACATCTTTAGGCGAAGAATTTGAATACCTCACTAGCCTTCGTCAACTGCGGATTGGTTATTGTGGAAACCTGGAGTCCTTGCCACCTAACATGAATAAATTGACTGCATTACATACTTTTGCGATATTAGATTGTGTAAAGCTTGAGCTAATGAGGTCGGGACGAGGCATCAGAGGTCTTCGGTCGTTATACATCAAAGCGTTGAGAGAACTGGAGATTGGCAGGTGTCCTAAGCTGACAAAAAGATGCAAAAGGGAAACAGGAGAAGACTGGTCCAAGATCAAACATGTCCCAAAGATTGATATTTACGACCCTGATGATGAAGATGAAGATGGTCTTATCGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

368

Amino Acids

42.08

Weight (kDa)

8.43

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 107 2.7e-15 NB-ARC domain
LRR_14 PF23598 163 - 347 1.3e-17 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 966
Acc36I ACCTGC 1 cut(s) 966
AciI CCGC 2 cut(s) 534, 802
AclWI GGATC 2 cut(s) 150, 464
AcsI RAATTY 2 cut(s) 317, 770
AfaI GTAC 2 cut(s) 8, 601
AflII CTTAAG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 1039
AgsI TTSAA 7 cut(s) 225, 271, 415, 492, 499, 643, 776
AjnI CCWGG 3 cut(s) 198, 660, 822
AjuI GAANNNNNNNTTGG 2 cut(s) 954, 986
AleI CACNNNNGTG 1 cut(s) 331
AluBI AGCT 8 cut(s) 359, 544, 616, 637, 688, 895, 901, 988
AluI AGCT 8 cut(s) 359, 544, 616, 637, 688, 895, 901, 988
Alw21I GWGCWC 1 cut(s) 514
Alw26I GTCTC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 510
AlwI GGATC 2 cut(s) 150, 464
AlwNI CAGNNNCTG 1 cut(s) 751
ApaLI GTGCAC 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 317, 770
AspS9I GGNCC 3 cut(s) 391, 426, 1026
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 34, 244
AvaII GGWCC 3 cut(s) 391, 426, 1026
BaeGI GKGCMC 1 cut(s) 514
BbsI GAAGAC 3 cut(s) 158, 923, 1026
Bbv12I GWGCWC 1 cut(s) 514
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 437, 1079
BciT130I CCWGG 3 cut(s) 200, 662, 824
BciVI GTATCC 1 cut(s) 208
BclI TGATCA 1 cut(s) 711
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 3 cut(s) 365, 440, 786
BfrI CTTAAG 1 cut(s) 475
BfuAI ACCTGC 1 cut(s) 966
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 4 cut(s) 200, 229, 662, 824
Bme18I GGWCC 3 cut(s) 391, 426, 1026
BmgT120I GGNCC 3 cut(s) 391, 426, 1026
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 4 cut(s) 200, 229, 662, 824
BmsI GCATC 2 cut(s) 930, 989
BpiI GAAGAC 3 cut(s) 158, 923, 1026
BpmI CTGGAG 2 cut(s) 845, 986
Bpu10I CCTNAGC 3 cut(s) 349, 537, 984
BpuEI CTTGAG 3 cut(s) 586, 701, 917
BpuMI CCSGG 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 1095
BsaJI CCNNGG 2 cut(s) 228, 661
Bse1I ACTGG 2 cut(s) 969, 1028
Bse3DI GCAATG 1 cut(s) 319
BseBI CCWGG 3 cut(s) 200, 662, 824
BseCI ATCGAT 1 cut(s) 1095
BseDI CCNNGG 2 cut(s) 228, 661
BseGI GGATG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 2 cut(s) 75, 528
BseNI ACTGG 2 cut(s) 969, 1028
BseRI GAGGAG 2 cut(s) 554, 698
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 938
BshVI ATCGAT 1 cut(s) 1095
BsiEI CGRYCG 1 cut(s) 938
BsiHKAI GWGCWC 1 cut(s) 514
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 927, 1028
BsmAI GTCTC 1 cut(s) 64
BsmFI GGGAC 2 cut(s) 927, 1028
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 6 cut(s) 64, 142, 456, 592, 711, 1032
BspACI CCGC 2 cut(s) 534, 802
BspCNI CTCAG 2 cut(s) 74, 529
BspDI ATCGAT 1 cut(s) 1095
BspLI GGNNCC 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 966
BspPI GGATC 2 cut(s) 150, 464
BspTI CTTAAG 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 319
BsrI ACTGG 2 cut(s) 969, 1028
BssECI CCNNGG 2 cut(s) 228, 661
BssMI GATC 6 cut(s) 64, 142, 456, 592, 711, 1032
Bst2UI CCWGG 3 cut(s) 200, 662, 824
BstAFI CTTAAG 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 5 cut(s) 61, 114, 349, 537, 984
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 6 cut(s) 67, 145, 459, 595, 714, 1035
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 6 cut(s) 64, 142, 456, 592, 711, 1032
BstMCI CGRYCG 1 cut(s) 938
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 3 cut(s) 200, 662, 824
BstNSI RCATGY 2 cut(s) 486, 1043
BstSCI CCNGG 4 cut(s) 198, 227, 660, 822
BstSLI GKGCMC 1 cut(s) 514
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 3 cut(s) 158, 923, 1026
BstX2I RGATCY 2 cut(s) 142, 456
BstYI RGATCY 2 cut(s) 142, 456
Bsu15I ATCGAT 1 cut(s) 1095
BsuI GTATCC 1 cut(s) 208
BsuTUI ATCGAT 1 cut(s) 1095
BtsCI GGATG 1 cut(s) 208
BveI ACCTGC 1 cut(s) 966
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 751
Cfr13I GGNCC 3 cut(s) 391, 426, 1026
ClaI ATCGAT 1 cut(s) 1095
Csp6I GTAC 2 cut(s) 7, 600
CviAII CATG 4 cut(s) 156, 483, 844, 1040
CviQI GTAC 2 cut(s) 7, 600
DdeI CTNAG 5 cut(s) 61, 114, 349, 537, 984
DpnI GATC 6 cut(s) 66, 144, 458, 594, 713, 1034
DpnII GATC 6 cut(s) 64, 142, 456, 592, 711, 1032
Eco47I GGWCC 3 cut(s) 391, 426, 1026
EcoRII CCWGG 3 cut(s) 198, 660, 822
EcoT22I ATGCAT 1 cut(s) 488
FaeI CATG 4 cut(s) 159, 486, 847, 1043
FalI AAGNNNNNCTT 1 cut(s) 1074
FaqI GGGAC 2 cut(s) 927, 1028
FatI CATG 4 cut(s) 155, 482, 843, 1039
FbaI TGATCA 1 cut(s) 711
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 3 cut(s) 365, 440, 786
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 2 cut(s) 845, 986
HapII CCGG 1 cut(s) 228
Hin1II CATG 4 cut(s) 159, 486, 847, 1043
HincII GTYRAC 2 cut(s) 531, 797
HindII GTYRAC 2 cut(s) 531, 797
HindIII AAGCTT 2 cut(s) 614, 893
HinfI GANTC 7 cut(s) 221, 463, 495, 568, 723, 748, 827
HpaII CCGG 1 cut(s) 228
HphI GGTGA 2 cut(s) 34, 244
Hpy166II GTNNAC 4 cut(s) 7, 512, 531, 797
Hpy188I TCNGA 4 cut(s) 64, 722, 753, 926
Hpy188III TCNNGA 7 cut(s) 37, 92, 440, 460, 492, 727, 912
Hpy8I GTNNAC 4 cut(s) 7, 512, 531, 797
HpyAV CCTTC 2 cut(s) 443, 800
HpyCH4V TGCA 8 cut(s) 110, 163, 486, 512, 523, 649, 860, 1002
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 5 cut(s) 61, 114, 349, 537, 984
Hsp92II CATG 4 cut(s) 159, 486, 847, 1043
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 6 cut(s) 64, 142, 456, 592, 711, 1032
LmnI GCTCC 2 cut(s) 541, 685
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 930, 989
MaeI CTAG 3 cut(s) 365, 440, 786
MaeIII GTNAC 3 cut(s) 232, 405, 560
MalI GATC 6 cut(s) 66, 144, 458, 594, 713, 1034
MboI GATC 6 cut(s) 64, 142, 456, 592, 711, 1032
MboII GAAGA 8 cut(s) 140, 163, 427, 779, 923, 1031, 1088, 1094
MflI RGATCY 2 cut(s) 142, 456
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 7 cut(s) 83, 169, 317, 419, 643, 770, 851
MlyI GAGTC 3 cut(s) 577, 757, 836
MmeI TCCRAC 1 cut(s) 256
Mph1103I ATGCAT 1 cut(s) 488
MseI TTAA 6 cut(s) 15, 257, 476, 609, 656, 734
MslI CAYNNNNRTG 2 cut(s) 331, 333
MspA1I CMGCKG 1 cut(s) 536
MspCI CTTAAG 1 cut(s) 475
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 4 cut(s) 200, 229, 662, 824
MvaI CCWGG 3 cut(s) 200, 662, 824
MwoI GCNNNNNNNGC 1 cut(s) 365
NciI CCSGG 1 cut(s) 229
NdeII GATC 6 cut(s) 64, 142, 456, 592, 711, 1032
NlaIII CATG 4 cut(s) 159, 486, 847, 1043
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 488
NspI RCATGY 2 cut(s) 486, 1043
OliI CACNNNNGTG 1 cut(s) 331
PaqCI CACCTGC 1 cut(s) 966
PciI ACATGT 1 cut(s) 1039
PfeI GAWTC 4 cut(s) 221, 463, 495, 723
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 3 cut(s) 576, 756, 835
PpsI GAGTC 3 cut(s) 576, 756, 835
PscI ACATGT 1 cut(s) 1039
Psp6I CCWGG 3 cut(s) 198, 660, 822
PspGI CCWGG 3 cut(s) 198, 660, 822
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 3 cut(s) 391, 426, 1026
PstNI CAGNNNCTG 1 cut(s) 751
PsuI RGATCY 2 cut(s) 142, 456
RsaI GTAC 2 cut(s) 8, 601
RsaNI GTAC 2 cut(s) 7, 600
RseI CAYNNNNRTG 2 cut(s) 331, 333
SaqAI TTAA 6 cut(s) 15, 257, 476, 609, 656, 734
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 6 cut(s) 64, 142, 456, 592, 711, 1032
Sau96I GGNCC 3 cut(s) 391, 426, 1026
SchI GAGTC 3 cut(s) 577, 757, 836
ScrFI CCNGG 4 cut(s) 200, 229, 662, 824
SduI GDGCHC 1 cut(s) 514
SfaNI GCATC 2 cut(s) 930, 989
SinI GGWCC 3 cut(s) 391, 426, 1026
SmiMI CAYNNNNRTG 2 cut(s) 331, 333
SmlI CTYRAG 4 cut(s) 475, 565, 680, 896
SmoI CTYRAG 4 cut(s) 475, 565, 680, 896
Sse9I AATT 7 cut(s) 83, 169, 317, 419, 643, 770, 851
SsiI CCGC 2 cut(s) 534, 802
SspI AATATT 1 cut(s) 470
SspMI CTAG 3 cut(s) 365, 440, 786
StyD4I CCNGG 4 cut(s) 198, 227, 660, 822
TaqI TCGA 3 cut(s) 36, 461, 1095
TaqII GACCGA 1 cut(s) 924
TasI AATT 7 cut(s) 83, 169, 317, 419, 643, 770, 851
TatI WGTACW 1 cut(s) 599
TfiI GAWTC 4 cut(s) 221, 463, 495, 723
Tru1I TTAA 6 cut(s) 15, 257, 476, 609, 656, 734
Tru9I TTAA 6 cut(s) 15, 257, 476, 609, 656, 734
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 5 cut(s) 164, 330, 860, 1089, 1095
TspGWI ACGGA 2 cut(s) 404, 439
Vha464I CTTAAG 1 cut(s) 475
VneI GTGCAC 1 cut(s) 510
VpaK11BI GGWCC 3 cut(s) 391, 426, 1026
XapI RAATTY 2 cut(s) 317, 770
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 2 cut(s) 486, 1043
XspI CTAG 3 cut(s) 365, 440, 786
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.