Rmu_sc0002009.1_g000005

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002009.1
OG0000159
Physical Location & Seq
Reverse (-)
17203 .. 20921
3719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002009.1_g000005.1.cds

Sequence Viewer

Length: 762 bp
atgctttctgctttttgcttttgcttgctgaaaaaggtgcttgacataattagcaagggaggtgtgaagggggtagcccacatcacaggaggtggtctcaccgacaatatacctagagctggaagagttgaagatgctgaaatgagacaaacttttaatatgggtattgggatggctcttgttgtgagtaaggaggcatcccacagaatacttgaagatggaaatagagcttactgcattggtgaggttataactggtgaaagaatctctttggcatggggtgcccaacttgagctcaccaagctcaataagactttatgtagcatcaagctagtgcttcaggatgcagagaagaagcaagtgaagaatcccctaatcactcgttggttgagagatctcaaagatgtttgccatgatgttgatgatgtccttgacgaactagagttccaaaagttgtggaagaaagttctggtcaacaaccgtgggagagtcaaaggacagggtgatatcaaaacagccataatttttaaaatacatgatctcattcttgatttaacaatttcagtggcacaagtagggtactccacaatcaattttcgtccctctagtgattttgaaatggttcgacatgtgtcaatatctaaaaagaacttgctgggaaaagaggcacaagtttctgatttcatgctcaaatcaaagaaattgcgaactattataattcctgaagattgccagatgaatcaacgttttgtgaagacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

253

Amino Acids

28.41

Weight (kDa)

9.26

Isoelectric Point (pI)

21.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 251, 716
AccB1I GGYRCC 1 cut(s) 281
AclI AACGTT 1 cut(s) 745
AcuI CTGAAG 2 cut(s) 323, 744
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 1 cut(s) 119
AflIII ACRYGT 1 cut(s) 628
AgsI TTSAA 3 cut(s) 131, 215, 617
AloI GAACNNNNNNTCC 2 cut(s) 429, 461
AluBI AGCT 5 cut(s) 119, 230, 295, 304, 331
AluI AGCT 5 cut(s) 119, 230, 295, 304, 331
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 101, 139
Asp700I GAANNNNTTC 1 cut(s) 621
AsuHPI GGTGA 5 cut(s) 91, 254, 269, 289, 515
BaeGI GKGCMC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 297
BccI CCATC 2 cut(s) 166, 212
BcoDI GTCTC 2 cut(s) 101, 139
BfaI CTAG 4 cut(s) 114, 332, 440, 606
BglII AGATCT 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 4 cut(s) 124, 206, 333, 334
BoxI GACNNNNGTC 1 cut(s) 631
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BpuEI CTTGAG 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 481
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 3 cut(s) 177, 197, 349
BseLI CCNNNNNNNGG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 286
BseYI CCCAGC 1 cut(s) 655
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 297
BslFI GGGAC 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 101, 139
BsmFI GGGAC 1 cut(s) 585
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 286, 297
Bsp143I GATC 2 cut(s) 394, 538
BspLI GGNNCC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 394, 538
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 26
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 3 cut(s) 177, 197, 349
BstKTI GATC 2 cut(s) 397, 541
BstMAI GTCTC 2 cut(s) 101, 139
BstMBI GATC 2 cut(s) 394, 538
BstMWI GCNNNNNNNGC 2 cut(s) 281, 301
BstNSI RCATGY 1 cut(s) 632
BstPAI GACNNNNGTC 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 3 cut(s) 177, 197, 349
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 580
CspCI CAANNNNNGTGG 6 cut(s) 437, 463, 472, 498, 546, 581
CviAII CATG 6 cut(s) 276, 413, 536, 629, 685, 759
CviJI RGCY 8 cut(s) 77, 119, 176, 230, 295, 304, 331, 518
CviKI_1 RGCY 8 cut(s) 77, 119, 176, 230, 295, 304, 331, 518
CviQI GTAC 1 cut(s) 580
DpnI GATC 2 cut(s) 396, 540
DpnII GATC 2 cut(s) 394, 538
DraI TTTAAA 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 101
Eco32I GATATC 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 323, 744
EcoICRI GAGCTC 1 cut(s) 295
EcoRV GATATC 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 297
FaeI CATG 6 cut(s) 279, 416, 539, 632, 688, 762
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FaqI GGGAC 1 cut(s) 585
FatI CATG 6 cut(s) 275, 412, 535, 628, 684, 758
FokI GGATG 3 cut(s) 184, 184, 356
FriOI GRGCYC 1 cut(s) 297
FspBI CTAG 4 cut(s) 114, 332, 440, 606
GsaI CCCAGC 1 cut(s) 659
Hin1II CATG 6 cut(s) 279, 416, 539, 632, 688, 762
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 4 cut(s) 264, 367, 489, 739
HphI GGTGA 5 cut(s) 91, 254, 269, 289, 515
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 1 cut(s) 679
Hpy188III TCNNGA 3 cut(s) 341, 548, 722
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 2 cut(s) 237, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 301
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 6 cut(s) 279, 416, 539, 632, 688, 762
Kzo9I GATC 2 cut(s) 394, 538
LpnPI CCDG 9 cut(s) 72, 105, 240, 326, 455, 485, 641, 735, 746
LweI GCATC 4 cut(s) 124, 206, 333, 334
MaeI CTAG 4 cut(s) 114, 332, 440, 606
MaeII ACGT 1 cut(s) 745
MalI GATC 2 cut(s) 396, 540
MboI GATC 2 cut(s) 394, 538
MboII GAAGA 7 cut(s) 135, 143, 227, 364, 376, 472, 737
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 286, 297
MluCI AATT 6 cut(s) 48, 522, 558, 592, 701, 717
MlyI GAGTC 1 cut(s) 498
MnlI CCTC 6 cut(s) 53, 83, 187, 238, 613, 658
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 3 cut(s) 156, 528, 554
MwoI GCNNNNNNNGC 2 cut(s) 281, 301
NdeII GATC 2 cut(s) 394, 538
NlaIII CATG 6 cut(s) 279, 416, 539, 632, 688, 762
NlaIV GGNNCC 1 cut(s) 283
NspI RCATGY 1 cut(s) 632
PciI ACATGT 1 cut(s) 628
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 3 cut(s) 264, 367, 739
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
PscI ACATGT 1 cut(s) 628
PshAI GACNNNNGTC 1 cut(s) 631
PsiI TTATAA 2 cut(s) 251, 716
Psp124BI GAGCTC 1 cut(s) 297
Psp1406I AACGTT 1 cut(s) 745
PspFI CCCAGC 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 283
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 3 cut(s) 156, 528, 554
Sau3AI GATC 2 cut(s) 394, 538
SchI GAGTC 1 cut(s) 498
SduI GDGCHC 2 cut(s) 286, 297
SfaNI GCATC 4 cut(s) 124, 206, 333, 334
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 6 cut(s) 48, 522, 558, 592, 701, 717
SspMI CTAG 4 cut(s) 114, 332, 440, 606
SstI GAGCTC 1 cut(s) 297
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 1 cut(s) 748
TaqI TCGA 1 cut(s) 625
TasI AATT 6 cut(s) 48, 522, 558, 592, 701, 717
TfiI GAWTC 3 cut(s) 264, 367, 739
Tru1I TTAA 3 cut(s) 156, 528, 554
Tru9I TTAA 3 cut(s) 156, 528, 554
TscAI CASTG 1 cut(s) 570
TspDTI ATGAA 2 cut(s) 673, 752
TspRI CASTG 1 cut(s) 570
XceI RCATGY 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 4 cut(s) 114, 332, 440, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.