Rh5DG065900

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000159
Physical Location & Seq
Reverse (-)
5610580 .. 5613021
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG065900.1

Sequence Viewer

Length: 591 bp
ATGTTCATTATTGAGGAATGTCCAGTTCTGAGGTCTTTGCCGCATAACATGAAATATTCAACTGCATTAGAGACTTTAATCATCTCTGACTGTGAGAAGCTTGATCTGTTGAGTCTTGAAGAATGCGTTCGAGGTCTAAGATCATTCTGGATCTTGAAATCAAAGTTGAAGAACTTTCCCCTTTGGCTTAAAGAGTGTGCAAGTACTCTACAAAACATATGTATTGCAAACTGTCAGAATCTCATTGCACTTCCGGAGTGGCTGCAAAGCTTCAAGTTGCTTGAAAAGCTAGTGATTGAAAACTGCCCCCAAGTGCCAGCTTTGCCAGAGGGGATGCATTGCCTCACAACATTGAGAGAATTGAAGATCAGTGGGTGTCCTCGATTGATGGAAAGATGCAACAGGCACGGAGAAATAAAGACAAAACAAGCTTCACTGATCCAAAAGTATTCAATGCCTTCAGGCTATCCAATTGTGGACATTACCATGACTTCGTATAATTCCCAGAACAATCAACATCGCCAAATCAAGATGGCGAAAGCCTTGATCAATCTGTTTAAACCTATTGAAGAATGGATAATGTACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

196

Amino Acids

22.72

Weight (kDa)

8.5

Isoelectric Point (pI)

65.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 158, 433
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 205, 584
AflIII ACRYGT 1 cut(s) 585
AluBI AGCT 5 cut(s) 100, 270, 289, 320, 431
AluI AGCT 5 cut(s) 100, 270, 289, 320, 431
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 158, 433
Aor13HI TCCGGA 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 249
BccI CCATC 2 cut(s) 382, 526
BclI TGATCA 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 290
BisI GCNGC 2 cut(s) 41, 263
BlsI GCNGC 2 cut(s) 42, 264
BmcAI AGTACT 1 cut(s) 205
BmsI GCATC 2 cut(s) 324, 386
BsaWI WCCGGW 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 2 cut(s) 243, 337
BseAI TCCGGA 1 cut(s) 253
BseGI GGATG 1 cut(s) 339
BseMI GCAATG 2 cut(s) 243, 337
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 128
Bsp13I TCCGGA 1 cut(s) 253
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 6 cut(s) 103, 140, 150, 366, 438, 546
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 21
BspEI TCCGGA 1 cut(s) 253
BspPI GGATC 2 cut(s) 158, 433
BsrDI GCAATG 2 cut(s) 243, 337
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 1 cut(s) 23
BssMI GATC 6 cut(s) 103, 140, 150, 366, 438, 546
Bst4CI ACNGT 2 cut(s) 92, 233
BstAUI TGTACA 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 29, 137
BstF5I GGATG 1 cut(s) 339
BstKTI GATC 6 cut(s) 106, 143, 153, 369, 441, 549
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 6 cut(s) 103, 140, 150, 366, 438, 546
BstMWI GCNNNNNNNGC 2 cut(s) 286, 322
BstNSI RCATGY 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 503
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 376, 434
Cac8I GCNNGC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 204, 583
CviAII CATG 3 cut(s) 49, 487, 586
CviJI RGCY 9 cut(s) 100, 187, 262, 270, 289, 320, 431, 465, 542
CviKI_1 RGCY 9 cut(s) 100, 187, 262, 270, 289, 320, 431, 465, 542
CviQI GTAC 2 cut(s) 204, 583
DdeI CTNAG 2 cut(s) 29, 137
DpnI GATC 6 cut(s) 105, 142, 152, 368, 440, 548
DpnII GATC 6 cut(s) 103, 140, 150, 366, 438, 546
DraI TTTAAA 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 339
FaeI CATG 3 cut(s) 52, 490, 589
FaiI YATR 7 cut(s) 45, 50, 218, 220, 488, 498, 587
FatI CATG 3 cut(s) 48, 486, 585
FauNDI CATATG 1 cut(s) 218
FbaI TGATCA 1 cut(s) 546
Fnu4HI GCNGC 2 cut(s) 41, 263
FokI GGATG 1 cut(s) 346
Fsp4HI GCNGC 2 cut(s) 41, 263
FspBI CTAG 1 cut(s) 290
GluI GCNGC 2 cut(s) 41, 263
HapII CCGG 1 cut(s) 254
Hin1II CATG 3 cut(s) 52, 490, 589
HindIII AAGCTT 3 cut(s) 98, 268, 429
HinfI GANTC 2 cut(s) 112, 238
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 3 cut(s) 30, 88, 237
Hpy188III TCNNGA 5 cut(s) 116, 148, 154, 254, 529
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 2 cut(s) 92, 233
HpyCH4V TGCA 7 cut(s) 65, 200, 227, 248, 265, 337, 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 322
HpyF3I CTNAG 2 cut(s) 29, 137
Hsp92II CATG 3 cut(s) 52, 490, 589
Kpn2I TCCGGA 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 6 cut(s) 103, 140, 150, 366, 438, 546
LpnPI CCDG 8 cut(s) 36, 133, 267, 330, 339, 388, 447, 518
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 2 cut(s) 324, 386
MaeI CTAG 1 cut(s) 290
MalI GATC 6 cut(s) 105, 142, 152, 368, 440, 548
MboI GATC 6 cut(s) 103, 140, 150, 366, 438, 546
MboII GAAGA 4 cut(s) 131, 181, 376, 581
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 150
MluCI AATT 3 cut(s) 359, 471, 499
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 6 cut(s) 7, 24, 125, 322, 353, 390
Mph1103I ATGCAT 1 cut(s) 339
MroI TCCGGA 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 3 cut(s) 77, 189, 558
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 1 cut(s) 254
MssI GTTTAAAC 1 cut(s) 559
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 286, 322
NdeI CATATG 1 cut(s) 218
NdeII GATC 6 cut(s) 103, 140, 150, 366, 438, 546
NlaIII CATG 3 cut(s) 52, 490, 589
NsiI ATGCAT 1 cut(s) 339
NspI RCATGY 1 cut(s) 589
PciI ACATGT 1 cut(s) 585
PctI GAATGC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 2 cut(s) 42, 264
PleI GAGTC 1 cut(s) 120
PmeI GTTTAAAC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 120
PscI ACATGT 1 cut(s) 585
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 2 cut(s) 205, 584
RsaNI GTAC 2 cut(s) 204, 583
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 3 cut(s) 77, 189, 558
SatI GCNGC 2 cut(s) 41, 263
Sau3AI GATC 6 cut(s) 103, 140, 150, 366, 438, 546
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 1 cut(s) 121
SetI ASST 8 cut(s) 35, 102, 136, 272, 291, 322, 433, 565
SfaNI GCATC 2 cut(s) 324, 386
SmiMI CAYNNNNRTG 1 cut(s) 485
Sse9I AATT 3 cut(s) 359, 471, 499
SsiI CCGC 1 cut(s) 41
SspI AATATT 1 cut(s) 56
SspMI CTAG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 92, 233
TaqI TCGA 2 cut(s) 130, 382
TasI AATT 3 cut(s) 359, 471, 499
TatI WGTACW 2 cut(s) 203, 582
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 3 cut(s) 77, 189, 558
Tru9I TTAA 3 cut(s) 77, 189, 558
TscAI CASTG 2 cut(s) 376, 441
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 2 cut(s) 376, 441
XceI RCATGY 1 cut(s) 589
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 1 cut(s) 290
ZrmI AGTACT 1 cut(s) 205
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.