Rmu_sc0004942.1_g000020

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004942.1
OG0000159
Physical Location & Seq
Forward (+)
78105 .. 78803
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004942.1_g000020.1.cds

Sequence Viewer

Length: 264 bp
atgcaatgctgcaggtgcacgggcactcaagcaggcagctgcggacgcaggggcgtgcaggcagggcaggcagcagggctgcaggcgcacgggcgcgcaggtaggcagacgagcgcaggggcgcgtagcgctgggcagacgcggctagcttcacatgctttccaagagatctacttggcatggggtgcccaacttgagctcaccaagctcaacaagaccttatctaccatcaaactagtgctcgaggatgcagagaagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

87

Amino Acids

9.17

Weight (kDa)

9.84

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3
Acc36I ACCTGC 2 cut(s) 3, 89
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 3 cut(s) 96, 124, 142
AciI CCGC 2 cut(s) 42, 142
AfeI AGCGCT 1 cut(s) 130
AhlI ACTAGT 1 cut(s) 235
AluBI AGCT 4 cut(s) 39, 149, 199, 208
AluI AGCT 4 cut(s) 39, 149, 199, 208
Alw21I GWGCWC 3 cut(s) 20, 201, 243
Alw44I GTGCAC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 130
ApaLI GTGCAC 1 cut(s) 16
ApeKI GCWGC 5 cut(s) 9, 36, 39, 71, 79
AspLEI GCGC 6 cut(s) 88, 96, 98, 116, 124, 131
AsuHPI GGTGA 1 cut(s) 193
AsuNHI GCTAGC 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 242
BaeGI GKGCMC 3 cut(s) 20, 26, 190
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 3 cut(s) 20, 201, 243
BbvI GCAGC 4 cut(s) 26, 48, 66, 83
BccI CCATC 1 cut(s) 236
BcuI ACTAGT 1 cut(s) 235
BfaI CTAG 2 cut(s) 146, 236
BfmI CTRYAG 2 cut(s) 10, 80
BfoI RGCGCY 1 cut(s) 132
BfuAI ACCTGC 2 cut(s) 3, 89
BglII AGATCT 1 cut(s) 168
BisI GCNGC 6 cut(s) 10, 37, 40, 72, 80, 143
BlsI GCNGC 6 cut(s) 11, 38, 41, 73, 81, 144
BmeT110I CYCGRG 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 187
BmsI GCATC 1 cut(s) 238
BmtI GCTAGC 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 12, 215
Bse3DI GCAATG 1 cut(s) 11
BseGI GGATG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 11
BsePI GCGCGC 1 cut(s) 94
BseSI GKGCMC 3 cut(s) 20, 26, 190
BseXI GCAGC 4 cut(s) 26, 48, 66, 83
BseYI CCCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 77
Bsh1236I CGCG 3 cut(s) 96, 124, 142
BshNI GGYRCC 1 cut(s) 185
BsiHKAI GWGCWC 3 cut(s) 20, 201, 243
BsiHKCI CYCGRG 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 5 cut(s) 20, 26, 190, 201, 243
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 2 cut(s) 42, 142
BspFNI CGCG 3 cut(s) 96, 124, 142
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 2 cut(s) 14, 84
BspMI ACCTGC 2 cut(s) 3, 89
BspOI GCTAGC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 11
BssHII GCGCGC 1 cut(s) 94
BssMI GATC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 185
BstC8I GCNNGC 7 cut(s) 34, 56, 60, 69, 84, 96, 147
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 3 cut(s) 96, 124, 142
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 6 cut(s) 88, 96, 98, 116, 124, 131
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 10, 80
BstSLI GKGCMC 3 cut(s) 20, 26, 190
BstUI CGCG 3 cut(s) 96, 124, 142
BstV1I GCAGC 4 cut(s) 26, 48, 66, 83
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BtsCI GGATG 1 cut(s) 253
BveI ACCTGC 2 cut(s) 3, 89
Cac8I GCNNGC 7 cut(s) 34, 56, 60, 69, 84, 96, 147
CfoI GCGC 6 cut(s) 88, 96, 98, 116, 124, 131
CseI GACGC 2 cut(s) 54, 148
CviAII CATG 2 cut(s) 155, 180
CviJI RGCY 6 cut(s) 39, 79, 145, 149, 199, 208
CviKI_1 RGCY 6 cut(s) 39, 79, 145, 149, 199, 208
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco47III AGCGCT 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 2 cut(s) 158, 183
FaiI YATR 2 cut(s) 156, 181
FatI CATG 2 cut(s) 154, 179
Fnu4HI GCNGC 6 cut(s) 10, 37, 40, 72, 80, 143
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 6 cut(s) 10, 37, 40, 72, 80, 143
FspBI CTAG 2 cut(s) 146, 236
GlaI GCGC 6 cut(s) 87, 95, 97, 115, 123, 130
GluI GCNGC 6 cut(s) 10, 37, 40, 72, 80, 143
GsaI CCCAGC 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 132
HgaI GACGC 2 cut(s) 54, 148
HhaI GCGC 6 cut(s) 88, 96, 98, 116, 124, 131
Hin1II CATG 2 cut(s) 158, 183
Hin6I GCGC 6 cut(s) 86, 94, 96, 114, 122, 129
HinP1I GCGC 6 cut(s) 86, 94, 96, 114, 122, 129
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 18
HpyCH4V TGCA 6 cut(s) 4, 12, 18, 58, 82, 251
Hsp92II CATG 2 cut(s) 158, 183
HspAI GCGC 6 cut(s) 86, 94, 96, 114, 122, 129
Kzo9I GATC 1 cut(s) 168
Lsp1109I GCAGC 4 cut(s) 26, 48, 66, 83
LweI GCATC 1 cut(s) 238
MaeI CTAG 2 cut(s) 146, 236
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 5 cut(s) 20, 26, 190, 201, 243
MnlI CCTC 1 cut(s) 238
MspA1I CMGCKG 1 cut(s) 39
MvnI CGCG 3 cut(s) 96, 124, 142
NdeII GATC 1 cut(s) 168
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 2 cut(s) 158, 183
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 242
PaqCI CACCTGC 1 cut(s) 3
PauI GCGCGC 1 cut(s) 94
PkrI GCNGC 6 cut(s) 11, 38, 41, 73, 81, 144
Psp124BI GAGCTC 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 242
PstI CTGCAG 2 cut(s) 14, 84
PsuI RGATCY 1 cut(s) 168
PteI GCGCGC 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 39
SacI GAGCTC 1 cut(s) 201
SatI GCNGC 6 cut(s) 10, 37, 40, 72, 80, 143
Sau3AI GATC 1 cut(s) 168
SduI GDGCHC 5 cut(s) 20, 26, 190, 201, 243
SetI ASST 7 cut(s) 17, 41, 103, 151, 201, 210, 221
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 2 cut(s) 10, 80
Sfr274I CTCGAG 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 3 cut(s) 27, 194, 242
SmoI CTYRAG 3 cut(s) 27, 194, 242
SpeI ACTAGT 1 cut(s) 235
SsiI CCGC 2 cut(s) 42, 142
SspMI CTAG 2 cut(s) 146, 236
SstI GAGCTC 1 cut(s) 201
TaqI TCGA 1 cut(s) 243
TauI GCSGC 1 cut(s) 145
TseI GCWGC 5 cut(s) 9, 36, 39, 71, 79
VneI GTGCAC 1 cut(s) 16
XceI RCATGY 1 cut(s) 158
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 2 cut(s) 146, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.