Rh7BG020700

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000159
Physical Location & Seq
Reverse (-)
1503914 .. 1506523
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG020700.1

Sequence Viewer

Length: 726 bp
ATGGGGGAGTTTGTCACTAGCATTGCACAGAACGCCGTGACTGGACTAGCTTATTTTACTTATAAAGAAGTTTGCTTGGCATGGGGTGTCACAGATGAGCTAGCCAAGCTCAAGGTGACCATCGCAGATGTCCAAAAAGTGGTCCTCGATGCAGAGAAAAAGCAGAGGAAGAATCCCCGTCTGACCGAGTGGTTAGGCAAGCTCAAAGAAGTATGCTACGACGTCGATGATGTGCTTGATGAATTTGCATTCAAAGAGCTACAAATGCAAGTGCTGAACAATCGCGGCAATATTGTAAAAGTAAAGGCCTTAGTCATCTCTGATTGTGAGAAGCTTGATTTGATGAGTTTGGGAGAAGGCATTCGAGGTCTTCGATCATTTTTCATCTCCAAAATGTCAAATTTAGAGGCTTTGCCCCATTGGCTTCAAGACTCCAAAGCCAGTCTACAGAGCATACACATCGAAAATTGCGTGCATCTCAAGGCACTTCCAGAGTGGCTGCAAAGCTTGATGCTGCTGCGACAACTAGTCATCGAAGGTTGCCCTCAATTGTTGGCCTTGCCGGAGGGGATGCATCAACTCGTTGCCTTGAAAGAATTGAAGATCAATGACTGTTCTATATTGGCTGAAAGTTGCAGAAGGAAAGAAGGTCAGGACTGGTCCAAGATCACTCGTGTTGCTAAGATTACAATTGATGGAGAGATCGTTGCATCAAGTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

241

Amino Acids

27.13

Weight (kDa)

5.7

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 91 8.3e-20 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
AatII GACGTC 1 cut(s) 225
AccB7I CCANNNNNTGG 1 cut(s) 139
AccI GTMKAC 1 cut(s) 445
AccII CGCG 1 cut(s) 285
AciI CCGC 1 cut(s) 285
AcsI RAATTY 2 cut(s) 242, 400
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 4 cut(s) 253, 428, 592, 601
AhdI GACNNNNNGTC 1 cut(s) 527
AhlI ACTAGT 1 cut(s) 526
AluBI AGCT 7 cut(s) 50, 100, 109, 202, 259, 334, 507
AluI AGCT 7 cut(s) 50, 100, 109, 202, 259, 334, 507
AoxI GGCC 2 cut(s) 306, 555
ApeKI GCWGC 3 cut(s) 499, 514, 517
ApoI RAATTY 2 cut(s) 242, 400
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 142, 660
AsuHPI GGTGA 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 100
AvaII GGWCC 2 cut(s) 142, 660
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 362
BbvI GCAGC 3 cut(s) 486, 501, 504
BccI CCATC 2 cut(s) 128, 689
BceAI ACGGC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BcuI ACTAGT 1 cut(s) 526
BfaI CTAG 4 cut(s) 18, 47, 101, 527
BfmI CTRYAG 1 cut(s) 446
BglI GCCNNNNNGGC 1 cut(s) 421
BisI GCNGC 4 cut(s) 286, 500, 515, 518
BlsI GCNGC 4 cut(s) 287, 501, 516, 519
Bme18I GGWCC 2 cut(s) 142, 660
BmeRI GACNNNNNGTC 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 142, 660
BmsI GCATC 6 cut(s) 139, 484, 501, 561, 583, 719
BmtI GCTAGC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 362
BpuEI CTTGAG 2 cut(s) 95, 464
BsaHI GRCGYC 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 3 cut(s) 46, 441, 662
Bse3DI GCAATG 1 cut(s) 21
BseGI GGATG 1 cut(s) 576
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 3 cut(s) 46, 441, 662
BseXI GCAGC 3 cut(s) 486, 501, 504
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 308, 557
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 139
BsmI GAATGC 2 cut(s) 248, 360
BsnI GGCC 2 cut(s) 308, 557
Bsp143I GATC 4 cut(s) 374, 603, 666, 702
BspACI CCGC 1 cut(s) 285
BspANI GGCC 2 cut(s) 308, 557
BspFNI CGCG 1 cut(s) 285
BspOI GCTAGC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 3 cut(s) 46, 441, 662
BssMI GATC 4 cut(s) 374, 603, 666, 702
BssNI GRCGYC 1 cut(s) 222
BssSI CACGAG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 672
Bst4CI ACNGT 1 cut(s) 614
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 102, 200, 473
BstDEI CTNAG 2 cut(s) 310, 681
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 1 cut(s) 576
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 4 cut(s) 377, 606, 669, 705
BstMBI GATC 4 cut(s) 374, 603, 666, 702
BstMWI GCNNNNNNNGC 4 cut(s) 32, 106, 265, 421
BstPI GGTNACC 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 446
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 486, 501, 504
BstV2I GAAGAC 1 cut(s) 362
BsuRI GGCC 2 cut(s) 308, 557
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 576
Cac8I GCNNGC 3 cut(s) 102, 200, 473
Cfr13I GGNCC 2 cut(s) 142, 660
CviAII CATG 1 cut(s) 81
DdeI CTNAG 2 cut(s) 310, 681
DpnI GATC 4 cut(s) 376, 605, 668, 704
DpnII GATC 4 cut(s) 374, 603, 666, 702
DriI GACNNNNNGTC 1 cut(s) 527
Eam1105I GACNNNNNGTC 1 cut(s) 527
Eco147I AGGCCT 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 142, 660
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 576
FaeI CATG 1 cut(s) 84
FaiI YATR 5 cut(s) 63, 82, 214, 455, 620
FatI CATG 1 cut(s) 80
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 4 cut(s) 286, 500, 515, 518
FokI GGATG 1 cut(s) 583
Fsp4HI GCNGC 4 cut(s) 286, 500, 515, 518
FspBI CTAG 4 cut(s) 18, 47, 101, 527
GluI GCNGC 4 cut(s) 286, 500, 515, 518
HaeIII GGCC 2 cut(s) 308, 557
HapII CCGG 1 cut(s) 563
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 84
HindIII AAGCTT 2 cut(s) 332, 505
HinfI GANTC 2 cut(s) 172, 431
HpaII CCGG 1 cut(s) 563
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 2 cut(s) 183, 322
Hpy188III TCNNGA 3 cut(s) 428, 491, 653
Hpy8I GTNNAC 1 cut(s) 446
Hpy99I CGWCG 2 cut(s) 224, 227
HpyAV CCTTC 4 cut(s) 350, 530, 633, 641
HpyCH4III ACNGT 1 cut(s) 614
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 9 cut(s) 26, 152, 248, 268, 475, 502, 574, 636, 710
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 106, 265, 421
HpyF3I CTNAG 2 cut(s) 310, 681
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 1 cut(s) 84
Kzo9I GATC 4 cut(s) 374, 603, 666, 702
LpnPI CCDG 6 cut(s) 27, 454, 504, 576, 638, 643
Lsp1109I GCAGC 3 cut(s) 486, 501, 504
LweI GCATC 6 cut(s) 139, 484, 501, 561, 583, 719
MaeI CTAG 4 cut(s) 18, 47, 101, 527
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 4 cut(s) 13, 37, 88, 115
MalI GATC 4 cut(s) 376, 605, 668, 704
MboI GATC 4 cut(s) 374, 603, 666, 702
MboII GAAGA 3 cut(s) 181, 362, 613
MfeI CAATTG 2 cut(s) 548, 690
MluCI AATT 6 cut(s) 242, 400, 466, 548, 596, 690
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 6 cut(s) 155, 159, 359, 400, 555, 559
Mph1103I ATGCAT 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 360
MspI CCGG 1 cut(s) 563
MunI CAATTG 2 cut(s) 548, 690
Mva1269I GAATGC 2 cut(s) 248, 360
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 4 cut(s) 32, 106, 265, 421
NdeII GATC 4 cut(s) 374, 603, 666, 702
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 1 cut(s) 84
NmuCI GTSAC 4 cut(s) 13, 37, 88, 115
NsiI ATGCAT 1 cut(s) 576
PceI AGGCCT 1 cut(s) 308
PcsI WCGNNNNNNNCGW 2 cut(s) 370, 468
PctI GAATGC 2 cut(s) 248, 360
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 172
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 4 cut(s) 287, 501, 516, 519
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PsiI TTATAA 1 cut(s) 63
PspEI GGTNACC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 142, 660
SatI GCNGC 4 cut(s) 286, 500, 515, 518
Sau3AI GATC 4 cut(s) 374, 603, 666, 702
Sau96I GGNCC 2 cut(s) 142, 660
SchI GAGTC 1 cut(s) 425
SfaNI GCATC 6 cut(s) 139, 484, 501, 561, 583, 719
SfcI CTRYAG 1 cut(s) 446
SinI GGWCC 2 cut(s) 142, 660
SmlI CTYRAG 2 cut(s) 110, 479
SmoI CTYRAG 2 cut(s) 110, 479
SpeI ACTAGT 1 cut(s) 526
Sse9I AATT 6 cut(s) 242, 400, 466, 548, 596, 690
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 1 cut(s) 285
SspI AATATT 1 cut(s) 292
SspMI CTAG 4 cut(s) 18, 47, 101, 527
StuI AGGCCT 1 cut(s) 308
TaaI ACNGT 1 cut(s) 614
TaiI ACGT 1 cut(s) 225
TaqI TCGA 6 cut(s) 147, 225, 364, 373, 462, 534
TaqII GACCGA 1 cut(s) 200
TasI AATT 6 cut(s) 242, 400, 466, 548, 596, 690
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 1 cut(s) 172
TseFI GTSAC 4 cut(s) 13, 37, 88, 115
TseI GCWGC 3 cut(s) 499, 514, 517
Tsp45I GTSAC 4 cut(s) 13, 37, 88, 115
TspDTI ATGAA 2 cut(s) 255, 373
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 142, 660
XapI RAATTY 2 cut(s) 242, 400
XmiI GTMKAC 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 4 cut(s) 18, 47, 101, 527
ZraI GACGTC 1 cut(s) 223
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.