FvH4_3g16170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000159
Physical Location & Seq
Forward (+)
10190994 .. 10191707
714 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16170.t1

Sequence Viewer

Length: 561 bp
ATGGCTTTGATATTGATGAAAGACCGTAGAGTAGACAGGACTGCTATCAACAAGGAATTATCAATGGCAGAGGACATTTTTAACAAAGCGTATTCAGCGCACCCGGTGCGCCGGGTGCGCGGCGCACCGGAAATTTTAACGGGAGTGCTTGGCACGCGCTGTATATGCAATTATGGTTGGTATTGGTCCTCTTTCCAGCTAATCCATTACAAACTTGAAGAGGAGAGACGATGGCATTGGTGTCGGGCCGCCGGCAGGAGACGACCTGAAGAGGAGTGGCGATCGATTGGACGGCGACGGAGAGAGAAGGAATTGGTGTCGGAGAGACAGAGGTGGTCGTGGTGGTCGGAGAATGAGGCGGCGAATTTACAGATGTGGTTTTTGGCGGTCGATGGAGGAAGGGAAAGAGAGCTGGATTTGGTTTTGAGTTTGGAAAGGTGGCAATCAATTCAGAGGGGAAGACTTCAATTCAAAGGAGAAGACTTCATCGAAAAGGAAAAAAAAATGAAAGGAAAAGAAGAGATAATGAGGCAATTTTATTATTATCATTATTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

22.91

Weight (kDa)

9.56

Isoelectric Point (pI)

86.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AccII CGCG 2 cut(s) 120, 157
AciI CCGC 4 cut(s) 120, 249, 359, 386
AcsI RAATTY 2 cut(s) 132, 364
AcuI CTGAAG 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 3 cut(s) 218, 467, 472
AluBI AGCT 2 cut(s) 199, 412
AluI AGCT 2 cut(s) 199, 412
Alw26I GTCTC 3 cut(s) 220, 253, 319
AoxI GGCC 1 cut(s) 246
ApoI RAATTY 2 cut(s) 132, 364
AspLEI GCGC 5 cut(s) 100, 111, 120, 125, 159
AspS9I GGNCC 2 cut(s) 186, 246
AsuC2I CCSGG 2 cut(s) 104, 113
AvaII GGWCC 1 cut(s) 186
BbsI GAAGAC 2 cut(s) 466, 486
BccI CCATC 2 cut(s) 225, 386
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcnI CCSGG 2 cut(s) 104, 113
BcoDI GTCTC 3 cut(s) 220, 253, 319
BisI GCNGC 3 cut(s) 121, 249, 360
BlsI GCNGC 3 cut(s) 122, 250, 361
Bme1390I CCNGG 2 cut(s) 104, 113
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 186, 246
BmrFI CCNGG 2 cut(s) 104, 113
BpiI GAAGAC 2 cut(s) 466, 486
BpuMI CCSGG 2 cut(s) 104, 113
Bsa29I ATCGAT 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse118I RCCGGY 1 cut(s) 251
BseCI ATCGAT 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 255
BseRI GAGGAG 2 cut(s) 236, 287
Bsh1236I CGCG 2 cut(s) 120, 157
Bsh1285I CGRYCG 2 cut(s) 284, 390
BshFI GGCC 1 cut(s) 248
BshVI ATCGAT 1 cut(s) 284
BsiEI CGRYCG 2 cut(s) 284, 390
BsiSI CCGG 4 cut(s) 104, 112, 128, 252
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 3 cut(s) 220, 253, 319
BsmBI CGTCTC 2 cut(s) 220, 253
BsnI GGCC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 4 cut(s) 120, 249, 359, 386
BspANI GGCC 1 cut(s) 248
BspDI ATCGAT 1 cut(s) 284
BspFNI CGCG 2 cut(s) 120, 157
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssMI GATC 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 3 cut(s) 213, 264, 513
BstAPI GCANNNNNTGC 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 155, 253
BstFNI CGCG 2 cut(s) 120, 157
BstHHI GCGC 5 cut(s) 100, 111, 120, 125, 159
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 3 cut(s) 220, 253, 319
BstMBI GATC 1 cut(s) 281
BstMCI CGRYCG 2 cut(s) 284, 390
BstMWI GCNNNNNNNGC 6 cut(s) 95, 106, 115, 117, 154, 165
BstSCI CCNGG 2 cut(s) 102, 111
BstUI CGCG 2 cut(s) 120, 157
BstV2I GAAGAC 2 cut(s) 466, 486
Bsu15I ATCGAT 1 cut(s) 284
BsuRI GGCC 1 cut(s) 248
BsuTUI ATCGAT 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 155, 253
CfoI GCGC 5 cut(s) 100, 111, 120, 125, 159
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 186, 246
ClaI ATCGAT 1 cut(s) 284
CviJI RGCY 4 cut(s) 5, 199, 248, 412
CviKI_1 RGCY 4 cut(s) 5, 199, 248, 412
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
DraIII CACNNNGTG 1 cut(s) 106
Eam1104I CTCTTC 3 cut(s) 213, 264, 513
EarI CTCTTC 3 cut(s) 213, 264, 513
Eco47I GGWCC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 288
Esp3I CGTCTC 2 cut(s) 220, 253
FaiI YATR 3 cut(s) 164, 166, 174
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 121, 249, 360
Fsp4HI GCNGC 3 cut(s) 121, 249, 360
GlaI GCGC 5 cut(s) 99, 110, 119, 124, 158
GluI GCNGC 3 cut(s) 121, 249, 360
HaeIII GGCC 1 cut(s) 248
HapII CCGG 4 cut(s) 104, 112, 128, 252
HhaI GCGC 5 cut(s) 100, 111, 120, 125, 159
Hin6I GCGC 5 cut(s) 98, 109, 118, 123, 157
HinP1I GCGC 5 cut(s) 98, 109, 118, 123, 157
HpaII CCGG 4 cut(s) 104, 112, 128, 252
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 322, 349, 453
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 301, 393
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 6 cut(s) 95, 106, 115, 117, 154, 165
HspAI GCGC 5 cut(s) 98, 109, 118, 123, 157
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 281
LpnPI CCDG 9 cut(s) 22, 117, 125, 141, 209, 241, 265, 279, 398
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 5 cut(s) 230, 281, 471, 491, 530
MluCI AATT 8 cut(s) 56, 132, 169, 311, 364, 447, 467, 533
MmeI TCCRAC 2 cut(s) 300, 327
MnlI CCTC 9 cut(s) 64, 199, 214, 265, 324, 349, 389, 447, 522
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 3 cut(s) 81, 137, 559
MspI CCGG 4 cut(s) 104, 112, 128, 252
MspR9I CCNGG 2 cut(s) 104, 113
MteI GCGCNGCGC 1 cut(s) 121
MvnI CGCG 2 cut(s) 120, 157
MwoI GCNNNNNNNGC 6 cut(s) 95, 106, 115, 117, 154, 165
NaeI GCCGGC 1 cut(s) 253
NciI CCSGG 2 cut(s) 104, 113
NdeII GATC 1 cut(s) 281
NgoMIV GCCGGC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 253
PkrI GCNGC 3 cut(s) 122, 250, 361
Ple19I CGATCG 1 cut(s) 284
PspPI GGNCC 2 cut(s) 186, 246
PvuI CGATCG 1 cut(s) 284
SaqAI TTAA 3 cut(s) 81, 137, 559
SatI GCNGC 3 cut(s) 121, 249, 360
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 2 cut(s) 186, 246
ScrFI CCNGG 2 cut(s) 104, 113
SetI ASST 5 cut(s) 201, 268, 335, 414, 440
SinI GGWCC 1 cut(s) 186
Sse9I AATT 8 cut(s) 56, 132, 169, 311, 364, 447, 467, 533
SsiI CCGC 4 cut(s) 120, 249, 359, 386
StyD4I CCNGG 2 cut(s) 102, 111
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 284, 390, 489
TasI AATT 8 cut(s) 56, 132, 169, 311, 364, 447, 467, 533
TauI GCSGC 3 cut(s) 123, 251, 362
Tru1I TTAA 3 cut(s) 81, 137, 559
Tru9I TTAA 3 cut(s) 81, 137, 559
TspDTI ATGAA 3 cut(s) 32, 475, 521
TspGWI ACGGA 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 2 cut(s) 132, 364
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.