Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000159

Physical Location & Seq

Genomic Coordinates Forward (+)

2017579 .. 2017911

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTATTTTCCGAAAGGAGTATTTACACGCCTCACCTTACTTCAATCTTTATTCATTGGGAATTGTGCGAATCTGAAATCTCTGAGCGAAGATTTTGAATACCTCACTAACCTTCGTCAACTGTGGATTGGTGAGTGTGGAAATGTGGAGTCCTTGCCACCTAACATGAAGAACTTGACTGCATTACATACTTTGGTGATCCTTGATTGTAAGAAGCTTGAGTTAATGAGGTCGGGAGAAGGCATCAAAGGTCTTCGATCATTATTTATCAAAGGTAGTTCAGATTTGGAGGCTTTGCCCAATTGGCTTCGAGAGTCTACAGACACTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

110

Amino Acids

12.42

Weight (kDa)

6.56

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	4 - 106	3.4e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000159)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica	MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica	Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis	pycom06g09270
rosa_chinensis	RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata	RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora	Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii	Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa	Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha	Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana	Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	44, 98
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AlwI	GGATC	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	25, 143, 208
BbsI	GAAGAC	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	318
BglI	GCCNNNNNGGC	1 cut(s)	304
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	198, 257
BspCNI	CTCAG	1 cut(s)	75
BspPI	GGATC	1 cut(s)	193
BssMI	GATC	2 cut(s)	198, 257
Bst4CI	ACNGT	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	201, 260
BstMBI	GATC	2 cut(s)	198, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	245
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	3 cut(s)	217, 293, 307
CviKI_1	RGCY	3 cut(s)	217, 293, 307
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	2 cut(s)	200, 259
DpnII	GATC	2 cut(s)	198, 257
FaeI	CATG	1 cut(s)	169
FaiI	YATR	3 cut(s)	167, 189, 331
FatI	CATG	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	3 cut(s)	70, 149, 314
HphI	GGTGA	3 cut(s)	25, 143, 208
Hpy166II	GTNNAC	2 cut(s)	119, 318
Hpy188I	TCNGA	4 cut(s)	12, 75, 84, 283
Hpy188III	TCNNGA	2 cut(s)	234, 311
Hpy8I	GTNNAC	2 cut(s)	119, 318
HpyAV	CCTTC	2 cut(s)	122, 233
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	198, 257
LweI	GCATC	1 cut(s)	252
MalI	GATC	2 cut(s)	200, 259
MboI	GATC	2 cut(s)	198, 257
MboII	GAAGA	3 cut(s)	101, 181, 245
MfeI	CAATTG	1 cut(s)	301
MluCI	AATT	2 cut(s)	61, 301
MlyI	GAGTC	2 cut(s)	158, 323
MnlI	CCTC	4 cut(s)	41, 113, 222, 283
MseI	TTAA	1 cut(s)	224
MunI	CAATTG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	304
NdeII	GATC	2 cut(s)	198, 257
NlaIII	CATG	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	70
PleI	GAGTC	2 cut(s)	157, 322
PpsI	GAGTC	2 cut(s)	157, 322
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	198, 257
SchI	GAGTC	2 cut(s)	158, 323
SetI	ASST	8 cut(s)	38, 105, 114, 163, 219, 233, 253, 277
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	318
SgeI	CNNG	8 cut(s)	39, 166, 178, 187, 215, 230, 246, 323
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	61, 301
TaaI	ACNGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	256, 310
TasI	AATT	2 cut(s)	61, 301
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	43, 182
XmiI	GTMKAC	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.