FvH4_2g17623

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000159
Physical Location & Seq
Reverse (-)
15156015 .. 15156563
549 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17623.t1

Sequence Viewer

Length: 471 bp
ATGGAGTTTGCCACTAGCATTGCTGAGAACGTCATGGGAAGGCTAGCTTCCTATGCTTCCCAAGAGGTCTCTTTGGCATGGGGTGCCCAACTTGAGCTCACAAAGCTCACGAAGACTTTATCCACCATCAATCTCGAAAATTCTACAGCGCACCCGGAAATTTTAACGGGAGTGCTTGGCACGCGCTGTATATGCAATTATGGTTGGAGACGACCTGAAGAGGAGTGGCGATCGATTGGACGGCGACGGAGAGAGAAGGAATTGGTGTCGGAGAGACGGAAGTGGCCGTGGTGGTCGGAGAATGAGGCGGCAAATTTACAGAGGTGGTTTTTGGCGGTCGATGGAGGAAGGGAAAGAGAGCTGGATTTGGTTTTGGGTTTGGGAAGGCGGCAATCAATTCAGAGGGGAAGACTTCAATTCAAAGGAGAAGACTTCATCGGAAAAAAAAATGAAAGGAAAAGAAGGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

157

Amino Acids

18.18

Weight (kDa)

10.0

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccII CGCG 1 cut(s) 184
AciI CCGC 3 cut(s) 308, 335, 388
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 3 cut(s) 139, 159, 313
AcuI CTGAAG 1 cut(s) 237
AgsI TTSAA 2 cut(s) 416, 421
AluBI AGCT 4 cut(s) 47, 97, 106, 361
AluI AGCT 4 cut(s) 47, 97, 106, 361
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 3 cut(s) 73, 202, 268
AoxI GGCC 1 cut(s) 284
ApoI RAATTY 3 cut(s) 139, 159, 313
AspLEI GCGC 2 cut(s) 151, 186
AsuC2I CCSGG 1 cut(s) 155
AsuNHI GCTAGC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 3 cut(s) 119, 415, 435
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 2 cut(s) 134, 335
BceAI ACGGC 2 cut(s) 257, 271
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 3 cut(s) 73, 202, 268
BfaI CTAG 2 cut(s) 15, 44
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 2 cut(s) 309, 389
BlsI GCNGC 2 cut(s) 310, 390
Bme1390I CCNGG 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 155
BmtI GCTAGC 1 cut(s) 47
BpiI GAAGAC 3 cut(s) 119, 415, 435
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 184
Bsh1285I CGRYCG 2 cut(s) 233, 339
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 83
BshVI ATCGAT 1 cut(s) 233
BsiEI CGRYCG 2 cut(s) 233, 339
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 155
BsmAI GTCTC 3 cut(s) 73, 202, 268
BsmBI CGTCTC 2 cut(s) 202, 268
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 88, 99
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 3 cut(s) 308, 335, 388
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 16
BspDI ATCGAT 1 cut(s) 233
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 85
BspOI GCTAGC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 45, 182
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 2 cut(s) 151, 186
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 3 cut(s) 73, 202, 268
BstMBI GATC 1 cut(s) 230
BstMCI CGRYCG 2 cut(s) 233, 339
BstMWI GCNNNNNNNGC 5 cut(s) 53, 83, 103, 181, 192
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 88
BstUI CGCG 1 cut(s) 184
BstV2I GAAGAC 3 cut(s) 119, 415, 435
Bsu15I ATCGAT 1 cut(s) 233
BsuRI GGCC 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 45, 182
CfoI GCGC 2 cut(s) 151, 186
ClaI ATCGAT 1 cut(s) 233
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 2 cut(s) 34, 78
CviJI RGCY 6 cut(s) 43, 47, 97, 106, 286, 361
CviKI_1 RGCY 6 cut(s) 43, 47, 97, 106, 286, 361
DdeI CTNAG 1 cut(s) 24
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 99
Esp3I CGTCTC 2 cut(s) 202, 268
FaeI CATG 2 cut(s) 37, 81
FaiI YATR 6 cut(s) 35, 54, 79, 191, 193, 201
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FatI CATG 2 cut(s) 33, 77
Fnu4HI GCNGC 2 cut(s) 309, 389
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 309, 389
FspBI CTAG 2 cut(s) 15, 44
GlaI GCGC 2 cut(s) 150, 185
GluI GCNGC 2 cut(s) 309, 389
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 155
HhaI GCGC 2 cut(s) 151, 186
Hin1II CATG 2 cut(s) 37, 81
Hin6I GCGC 2 cut(s) 149, 184
HinP1I GCGC 2 cut(s) 149, 184
HpaII CCGG 1 cut(s) 155
Hpy188I TCNGA 4 cut(s) 271, 298, 402, 440
Hpy188III TCNNGA 2 cut(s) 109, 134
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 5 cut(s) 33, 250, 342, 378, 456
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 83, 103, 181, 192
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 37, 81
HspAI GCGC 2 cut(s) 149, 184
Kzo9I GATC 1 cut(s) 230
LpnPI CCDG 3 cut(s) 168, 228, 347
MaeI CTAG 2 cut(s) 15, 44
MaeII ACGT 1 cut(s) 30
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 4 cut(s) 124, 230, 420, 440
MhlI GDGCHC 2 cut(s) 88, 99
MluCI AATT 7 cut(s) 139, 159, 196, 260, 313, 396, 416
MmeI TCCRAC 3 cut(s) 185, 249, 276
MnlI CCTC 6 cut(s) 58, 214, 298, 315, 338, 396
MseI TTAA 1 cut(s) 164
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 5 cut(s) 53, 83, 103, 181, 192
NciI CCSGG 1 cut(s) 155
NdeII GATC 1 cut(s) 230
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 2 cut(s) 37, 81
NlaIV GGNNCC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 310, 390
Ple19I CGATCG 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 85
PvuI CGATCG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 2 cut(s) 309, 389
Sau3AI GATC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 2 cut(s) 88, 99
SetI ASST 8 cut(s) 33, 49, 69, 99, 108, 217, 326, 363
SfcI CTRYAG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 7 cut(s) 139, 159, 196, 260, 313, 396, 416
SsiI CCGC 3 cut(s) 308, 335, 388
SspMI CTAG 2 cut(s) 15, 44
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 135, 233, 339
TasI AATT 7 cut(s) 139, 159, 196, 260, 313, 396, 416
TauI GCSGC 2 cut(s) 311, 391
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 424, 465
TspGWI ACGGA 2 cut(s) 262, 292
XapI RAATTY 3 cut(s) 139, 159, 313
XspI CTAG 2 cut(s) 15, 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.