Belongs to the disease resistance NB-LRR family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 9 - 94 | 3e-20 | Rx N-terminal domain |
| NB-ARC | PF00931 | 195 - 356 | 1.5e-30 | NB-ARC domain |
| WHD_DRP | PF23559 | 439 - 509 | 2.8e-20 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 577 - 776 | 7.2e-26 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 593 - 737 | 1.3e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_R13L1-DRL21 | PF25019 | 744 - 804 | 3.4e-06 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1258 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccII | CGCG | 1 cut(s) | 322 |
| AccIII | TCCGGA | 1 cut(s) | 2362 |
| AciI | CCGC | 6 cut(s) | 259, 1145, 1567, 1753, 2169, 2432 |
| AclI | AACGTT | 1 cut(s) | 1714 |
| AclWI | GGATC | 3 cut(s) | 801, 1482, 2077 |
| AcoI | YGGCCR | 1 cut(s) | 1699 |
| AcsI | RAATTY | 5 cut(s) | 682, 837, 1334, 1888, 2034 |
| AcuI | CTGAAG | 3 cut(s) | 125, 1713, 2192 |
| AcyI | GRCGYC | 1 cut(s) | 2017 |
| AfaI | GTAC | 3 cut(s) | 306, 1550, 2599 |
| AfeI | AGCGCT | 1 cut(s) | 1082 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 78, 615, 1013, 1697, 2120 |
| AflIII | ACRYGT | 2 cut(s) | 1218, 1597 |
| AhlI | ACTAGT | 2 cut(s) | 133, 385 |
| AjiI | CACGTC | 1 cut(s) | 2546 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 773, 805 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 231, 263 |
| Alw21I | GWGCWC | 3 cut(s) | 99, 460, 474 |
| Alw26I | GTCTC | 4 cut(s) | 73, 683, 715, 1738 |
| Alw44I | GTGCAC | 2 cut(s) | 456, 470 |
| AlwI | GGATC | 3 cut(s) | 801, 1482, 2077 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 256 |
| Ama87I | CYCGRG | 2 cut(s) | 1735, 2387 |
| Aor13HI | TCCGGA | 1 cut(s) | 2362 |
| Aor51HI | AGCGCT | 1 cut(s) | 1082 |
| AoxI | GGCC | 1 cut(s) | 1699 |
| ApaLI | GTGCAC | 2 cut(s) | 456, 470 |
| ApeKI | GCWGC | 5 cut(s) | 256, 758, 1078, 1882, 2502 |
| ApoI | RAATTY | 5 cut(s) | 682, 837, 1334, 1888, 2034 |
| AseI | ATTAAT | 2 cut(s) | 737, 753 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1590 |
| AspLEI | GCGC | 1 cut(s) | 1083 |
| AspS9I | GGNCC | 2 cut(s) | 767, 2234 |
| AsuHPI | GGTGA | 3 cut(s) | 91, 2014, 2534 |
| AsuNHI | GCTAGC | 2 cut(s) | 43, 439 |
| AvaI | CYCGRG | 2 cut(s) | 1735, 2387 |
| AvaII | GGWCC | 2 cut(s) | 767, 2234 |
| BaeGI | GKGCMC | 3 cut(s) | 88, 460, 474 |
| BalI | TGGCCA | 1 cut(s) | 1701 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 1 cut(s) | 99 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 31, 63 |
| BbsI | GAAGAC | 3 cut(s) | 1730, 2237, 2589 |
| Bbv12I | GWGCWC | 3 cut(s) | 99, 460, 474 |
| BbvI | GCAGC | 5 cut(s) | 243, 745, 1090, 1869, 2489 |
| BccI | CCATC | 5 cut(s) | 134, 1411, 1691, 1808, 2602 |
| BceAI | ACGGC | 1 cut(s) | 2370 |
| BciVI | GTATCC | 2 cut(s) | 859, 1370 |
| BclI | TGATCA | 1 cut(s) | 1956 |
| BcoDI | GTCTC | 4 cut(s) | 73, 683, 715, 1738 |
| BcuI | ACTAGT | 2 cut(s) | 133, 385 |
| BfmI | CTRYAG | 3 cut(s) | 1155, 2307, 2318 |
| BfoI | RGCGCY | 1 cut(s) | 1084 |
| BfuAI | ACCTGC | 1 cut(s) | 1258 |
| BfuI | GTATCC | 2 cut(s) | 859, 1370 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2293 |
| BglII | AGATCT | 3 cut(s) | 196, 1451, 1762 |
| BisI | GCNGC | 6 cut(s) | 257, 759, 1079, 1883, 2432, 2503 |
| BlpI | GCTNAGC | 1 cut(s) | 435 |
| BlsI | GCNGC | 6 cut(s) | 258, 760, 1080, 1884, 2433, 2504 |
| BmcAI | AGTACT | 1 cut(s) | 1550 |
| Bme18I | GGWCC | 2 cut(s) | 767, 2234 |
| BmeT110I | CYCGRG | 2 cut(s) | 1735, 2387 |
| BmgBI | CACGTC | 1 cut(s) | 2546 |
| BmgT120I | GGNCC | 2 cut(s) | 767, 2234 |
| BmiI | GGNNCC | 3 cut(s) | 85, 1356, 1952 |
| BmsI | GCATC | 4 cut(s) | 136, 1012, 1261, 2399 |
| BmtI | GCTAGC | 2 cut(s) | 47, 443 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1600, 1730 |
| BpiI | GAAGAC | 3 cut(s) | 1730, 2237, 2589 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1430, 1462 |
| BpmI | CTGGAG | 1 cut(s) | 565 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 435 |
| BpuEI | CTTGAG | 5 cut(s) | 113, 1643, 1802, 1946, 2223 |
| BsaHI | GRCGYC | 1 cut(s) | 2017 |
| BsaI | GGTCTC | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 3 cut(s) | 72, 1906, 2291 |
| BsaWI | WCCGGW | 1 cut(s) | 2362 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 78, 615, 1013, 1697, 2120 |
| Bse1I | ACTGG | 2 cut(s) | 332, 582 |
| Bse3DI | GCAATG | 3 cut(s) | 18, 1274, 2443 |
| BseAI | TCCGGA | 1 cut(s) | 2362 |
| BseDI | CCNNGG | 3 cut(s) | 72, 1906, 2291 |
| BseGI | GGATG | 6 cut(s) | 151, 492, 859, 1003, 1047, 2414 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 78, 615, 1013, 1697, 2120 |
| BseMI | GCAATG | 3 cut(s) | 18, 1274, 2443 |
| BseMII | CTCAG | 4 cut(s) | 726, 1270, 1780, 2445 |
| BseNI | ACTGG | 2 cut(s) | 332, 582 |
| BseRI | GAGGAG | 7 cut(s) | 602, 1083, 1088, 1146, 1799, 1943, 2540 |
| BseSI | GKGCMC | 3 cut(s) | 88, 460, 474 |
| BseXI | GCAGC | 5 cut(s) | 243, 745, 1090, 1869, 2489 |
| BseYI | CCCAGC | 1 cut(s) | 352 |
| BsgI | GTGCAG | 1 cut(s) | 1236 |
| Bsh1236I | CGCG | 1 cut(s) | 322 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2262 |
| BshFI | GGCC | 1 cut(s) | 1701 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BsiEI | CGRYCG | 1 cut(s) | 2262 |
| BsiHKAI | GWGCWC | 3 cut(s) | 99, 460, 474 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1735, 2387 |
| BsiSI | CCGG | 1 cut(s) | 2363 |
| BslFI | GGGAC | 3 cut(s) | 369, 975, 1888 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 78, 615, 1013, 1697, 2120 |
| BsmAI | GTCTC | 4 cut(s) | 73, 683, 715, 1738 |
| BsmBI | CGTCTC | 1 cut(s) | 1738 |
| BsmFI | GGGAC | 3 cut(s) | 369, 975, 1888 |
| BsmI | GAATGC | 1 cut(s) | 2144 |
| BsnI | GGCC | 1 cut(s) | 1701 |
| Bso31I | GGTCTC | 1 cut(s) | 73 |
| BsoBI | CYCGRG | 2 cut(s) | 1735, 2387 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 99, 460, 474 |
| Bsp13I | TCCGGA | 1 cut(s) | 2362 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 435 |
| BspACI | CCGC | 6 cut(s) | 259, 1145, 1567, 1753, 2169, 2432 |
| BspANI | GGCC | 1 cut(s) | 1701 |
| BspCNI | CTCAG | 4 cut(s) | 725, 1269, 1779, 2446 |
| BspEI | TCCGGA | 1 cut(s) | 2362 |
| BspFNI | CGCG | 1 cut(s) | 322 |
| BspHI | TCATGA | 1 cut(s) | 1516 |
| BspLI | GGNNCC | 3 cut(s) | 85, 1356, 1952 |
| BspMAI | CTGCAG | 1 cut(s) | 2311 |
| BspMI | ACCTGC | 1 cut(s) | 1258 |
| BspOI | GCTAGC | 2 cut(s) | 47, 443 |
| BspPI | GGATC | 3 cut(s) | 801, 1482, 2077 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BspTNI | GGTCTC | 1 cut(s) | 73 |
| BsrDI | GCAATG | 3 cut(s) | 18, 1274, 2443 |
| BsrI | ACTGG | 2 cut(s) | 332, 582 |
| BssECI | CCNNGG | 3 cut(s) | 72, 1906, 2291 |
| BssNI | GRCGYC | 1 cut(s) | 2017 |
| BssT1I | CCWWGG | 3 cut(s) | 72, 1906, 2291 |
| Bst4CI | ACNGT | 6 cut(s) | 284, 1156, 1296, 1343, 1558, 2342 |
| Bst6I | CTCTTC | 3 cut(s) | 520, 1626, 2073 |
| BstACI | GRCGYC | 1 cut(s) | 2017 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 83, 2440, 2502 |
| BstC8I | GCNNGC | 5 cut(s) | 45, 441, 1166, 2144, 2197 |
| BstDEI | CTNAG | 6 cut(s) | 435, 712, 824, 1256, 1766, 2454 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1011 |
| BstF5I | GGATG | 6 cut(s) | 151, 492, 859, 1003, 1047, 2414 |
| BstFNI | CGCG | 1 cut(s) | 322 |
| BstH2I | RGCGCY | 1 cut(s) | 1084 |
| BstHHI | GCGC | 1 cut(s) | 1083 |
| BstMAI | GTCTC | 4 cut(s) | 73, 683, 715, 1738 |
| BstMCI | CGRYCG | 1 cut(s) | 2262 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 53, 83, 103, 440, 1891, 2293, 2440, 2502, 2549 |
| BstNSI | RCATGY | 7 cut(s) | 1003, 1039, 1168, 1222, 1392, 1601, 1731 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1600, 1730 |
| BstSFI | CTRYAG | 3 cut(s) | 1155, 2307, 2318 |
| BstSLI | GKGCMC | 3 cut(s) | 88, 460, 474 |
| BstUI | CGCG | 1 cut(s) | 322 |
| BstV1I | GCAGC | 5 cut(s) | 243, 745, 1090, 1869, 2489 |
| BstV2I | GAAGAC | 3 cut(s) | 1730, 2237, 2589 |
| BstX2I | RGATCY | 6 cut(s) | 196, 793, 1451, 1474, 1762, 2082 |
| BstYI | RGATCY | 6 cut(s) | 196, 793, 1451, 1474, 1762, 2082 |
| BsuI | GTATCC | 2 cut(s) | 859, 1370 |
| BsuRI | GGCC | 1 cut(s) | 1701 |
| BtrI | CACGTC | 1 cut(s) | 2546 |
| BtsCI | GGATG | 6 cut(s) | 151, 492, 859, 1003, 1047, 2414 |
| BtsIMutI | CAGTG | 5 cut(s) | 289, 589, 1348, 1539, 1774 |
| BveI | ACCTGC | 1 cut(s) | 1258 |
| Cac8I | GCNNGC | 5 cut(s) | 45, 441, 1166, 2144, 2197 |
| CaiI | CAGNNNCTG | 1 cut(s) | 256 |
| CciI | TCATGA | 1 cut(s) | 1516 |
| CfoI | GCGC | 1 cut(s) | 1083 |
| Cfr13I | GGNCC | 2 cut(s) | 767, 2234 |
| CseI | GACGC | 3 cut(s) | 1720, 1928, 2025 |
| Csp6I | GTAC | 3 cut(s) | 305, 1549, 2598 |
| CspCI | CAANNNNNGTGG | 9 cut(s) | 36, 265, 300, 1013, 1048, 1269, 1304, 1515, 1550 |
| CviQI | GTAC | 3 cut(s) | 305, 1549, 2598 |
| DdeI | CTNAG | 6 cut(s) | 435, 712, 824, 1256, 1766, 2454 |
| DraI | TTTAAA | 4 cut(s) | 909, 1063, 1498, 1744 |
| EaeI | YGGCCR | 1 cut(s) | 1699 |
| Eam1104I | CTCTTC | 3 cut(s) | 520, 1626, 2073 |
| EarI | CTCTTC | 3 cut(s) | 520, 1626, 2073 |
| EciI | GGCGGA | 1 cut(s) | 1556 |
| Ecl136II | GAGCTC | 1 cut(s) | 97 |
| Eco130I | CCWWGG | 3 cut(s) | 72, 1906, 2291 |
| Eco24I | GRGCYC | 1 cut(s) | 99 |
| Eco31I | GGTCTC | 1 cut(s) | 73 |
| Eco32I | GATATC | 1 cut(s) | 859 |
| Eco47I | GGWCC | 2 cut(s) | 767, 2234 |
| Eco47III | AGCGCT | 1 cut(s) | 1082 |
| Eco53kI | GAGCTC | 1 cut(s) | 97 |
| Eco57I | CTGAAG | 3 cut(s) | 125, 1713, 2192 |
| Eco88I | CYCGRG | 2 cut(s) | 1735, 2387 |
| EcoICRI | GAGCTC | 1 cut(s) | 97 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1011 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2234 |
| EcoRI | GAATTC | 1 cut(s) | 1334 |
| EcoRV | GATATC | 1 cut(s) | 859 |
| EcoT14I | CCWWGG | 3 cut(s) | 72, 1906, 2291 |
| EcoT22I | ATGCAT | 2 cut(s) | 1005, 1276 |
| EcoT38I | GRGCYC | 1 cut(s) | 99 |
| ErhI | CCWWGG | 3 cut(s) | 72, 1906, 2291 |
| Esp3I | CGTCTC | 1 cut(s) | 1738 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 545, 577, 807, 839, 1608, 1640 |
| FaqI | GGGAC | 3 cut(s) | 369, 975, 1888 |
| FauI | CCCGC | 1 cut(s) | 1746 |
| FauNDI | CATATG | 1 cut(s) | 1946 |
| FbaI | TGATCA | 1 cut(s) | 1956 |
| Fnu4HI | GCNGC | 6 cut(s) | 257, 759, 1079, 1883, 2432, 2503 |
| FokI | GGATG | 6 cut(s) | 158, 499, 866, 990, 1034, 2421 |
| FriOI | GRGCYC | 1 cut(s) | 99 |
| Fsp4HI | GCNGC | 6 cut(s) | 257, 759, 1079, 1883, 2432, 2503 |
| GlaI | GCGC | 1 cut(s) | 1082 |
| GluI | GCNGC | 6 cut(s) | 257, 759, 1079, 1883, 2432, 2503 |
| GsaI | CCCAGC | 1 cut(s) | 356 |
| GsuI | CTGGAG | 1 cut(s) | 565 |
| HaeII | RGCGCY | 1 cut(s) | 1084 |
| HaeIII | GGCC | 1 cut(s) | 1701 |
| HapII | CCGG | 1 cut(s) | 2363 |
| HgaI | GACGC | 3 cut(s) | 1720, 1928, 2025 |
| HhaI | GCGC | 1 cut(s) | 1083 |
| Hin1I | GRCGYC | 1 cut(s) | 2017 |
| Hin6I | GCGC | 1 cut(s) | 1081 |
| HinP1I | GCGC | 1 cut(s) | 1081 |
| HincII | GTYRAC | 2 cut(s) | 223, 277 |
| HindII | GTYRAC | 2 cut(s) | 223, 277 |
| HindIII | AAGCTT | 1 cut(s) | 2204 |
| HpaII | CCGG | 1 cut(s) | 2363 |
| HphI | GGTGA | 3 cut(s) | 91, 2014, 2534 |
| Hpy166II | GTNNAC | 6 cut(s) | 223, 277, 458, 472, 1313, 2600 |
| Hpy188I | TCNGA | 5 cut(s) | 715, 1208, 1259, 2408, 2572 |
| Hpy8I | GTNNAC | 6 cut(s) | 223, 277, 458, 472, 1313, 2600 |
| HpyAV | CCTTC | 6 cut(s) | 127, 1007, 2111, 2225, 2471, 2588 |
| HpyCH4III | ACNGT | 6 cut(s) | 284, 1156, 1296, 1343, 1558, 2342 |
| HpyCH4IV | ACGT | 4 cut(s) | 30, 219, 1714, 2545 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 53, 83, 103, 440, 1891, 2293, 2440, 2502, 2549 |
| HpyF3I | CTNAG | 6 cut(s) | 435, 712, 824, 1256, 1766, 2454 |
| HpySE526I | ACGT | 4 cut(s) | 30, 219, 1714, 2545 |
| Hsp92I | GRCGYC | 1 cut(s) | 2017 |
| HspAI | GCGC | 1 cut(s) | 1081 |
| Kpn2I | TCCGGA | 1 cut(s) | 2362 |
| Ksp22I | TGATCA | 1 cut(s) | 1956 |
| LmnI | GCTCC | 6 cut(s) | 929, 1075, 1161, 1786, 1968, 2417 |
| Lsp1109I | GCAGC | 5 cut(s) | 243, 745, 1090, 1869, 2489 |
| LweI | GCATC | 4 cut(s) | 136, 1012, 1261, 2399 |
| MaeII | ACGT | 4 cut(s) | 30, 219, 1714, 2545 |
| MaeIII | GTNAC | 3 cut(s) | 341, 1916, 2336 |
| MfeI | CAATTG | 2 cut(s) | 876, 2331 |
| MflI | RGATCY | 6 cut(s) | 196, 793, 1451, 1474, 1762, 2082 |
| MhlI | GDGCHC | 4 cut(s) | 88, 99, 460, 474 |
| MlsI | TGGCCA | 1 cut(s) | 1701 |
| MluNI | TGGCCA | 1 cut(s) | 1701 |
| MlyI | GAGTC | 4 cut(s) | 300, 881, 997, 2561 |
| MmeI | TCCRAC | 3 cut(s) | 305, 831, 2386 |
| Mox20I | TGGCCA | 1 cut(s) | 1701 |
| Mph1103I | ATGCAT | 2 cut(s) | 1005, 1276 |
| MroI | TCCGGA | 1 cut(s) | 2362 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1590 |
| MscI | TGGCCA | 1 cut(s) | 1701 |
| Msp20I | TGGCCA | 1 cut(s) | 1701 |
| MspI | CCGG | 1 cut(s) | 2363 |
| MunI | CAATTG | 2 cut(s) | 876, 2331 |
| Mva1269I | GAATGC | 1 cut(s) | 2144 |
| MvnI | CGCG | 1 cut(s) | 322 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 53, 83, 103, 440, 1891, 2293, 2440, 2502, 2549 |
| NdeI | CATATG | 1 cut(s) | 1946 |
| NheI | GCTAGC | 2 cut(s) | 43, 439 |
| NlaIV | GGNNCC | 3 cut(s) | 85, 1356, 1952 |
| NmuCI | GTSAC | 1 cut(s) | 1916 |
| NsiI | ATGCAT | 2 cut(s) | 1005, 1276 |
| NspI | RCATGY | 7 cut(s) | 1003, 1039, 1168, 1222, 1392, 1601, 1731 |
| PaeI | GCATGC | 1 cut(s) | 1168 |
| PaeR7I | CTCGAG | 2 cut(s) | 1735, 2387 |
| PagI | TCATGA | 1 cut(s) | 1516 |
| PciI | ACATGT | 2 cut(s) | 1218, 1597 |
| PctI | GAATGC | 1 cut(s) | 2144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1590 |
| PfeI | GAWTC | 6 cut(s) | 169, 328, 509, 1708, 2267, 2303 |
| PflFI | GACNNNGTC | 1 cut(s) | 227 |
| PkrI | GCNGC | 6 cut(s) | 258, 760, 1080, 1884, 2433, 2504 |
| Ple19I | CGATCG | 1 cut(s) | 2262 |
| PleI | GAGTC | 4 cut(s) | 299, 880, 996, 2561 |
| PpsI | GAGTC | 4 cut(s) | 299, 880, 996, 2561 |
| PpuMI | RGGWCCY | 1 cut(s) | 2234 |
| PscI | ACATGT | 2 cut(s) | 1218, 1597 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1600, 1730 |
| PshBI | ATTAAT | 2 cut(s) | 737, 753 |
| Psp124BI | GAGCTC | 1 cut(s) | 99 |
| Psp1406I | AACGTT | 1 cut(s) | 1714 |
| Psp5II | RGGWCCY | 1 cut(s) | 2234 |
| PspFI | CCCAGC | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 3 cut(s) | 85, 1356, 1952 |
| PspPI | GGNCC | 2 cut(s) | 767, 2234 |
| PspPPI | RGGWCCY | 1 cut(s) | 2234 |
| PspXI | VCTCGAGB | 1 cut(s) | 2387 |
| PstI | CTGCAG | 1 cut(s) | 2311 |
| PstNI | CAGNNNCTG | 1 cut(s) | 256 |
| PsuI | RGATCY | 6 cut(s) | 196, 793, 1451, 1474, 1762, 2082 |
| PsyI | GACNNNGTC | 1 cut(s) | 227 |
| PvuI | CGATCG | 1 cut(s) | 2262 |
| RsaI | GTAC | 3 cut(s) | 306, 1550, 2599 |
| RsaNI | GTAC | 3 cut(s) | 305, 1549, 2598 |
| SacI | GAGCTC | 1 cut(s) | 99 |
| SatI | GCNGC | 6 cut(s) | 257, 759, 1079, 1883, 2432, 2503 |
| Sau96I | GGNCC | 2 cut(s) | 767, 2234 |
| ScaI | AGTACT | 1 cut(s) | 1550 |
| SchI | GAGTC | 4 cut(s) | 300, 881, 997, 2561 |
| SduI | GDGCHC | 4 cut(s) | 88, 99, 460, 474 |
| SfaNI | GCATC | 4 cut(s) | 136, 1012, 1261, 2399 |
| SfcI | CTRYAG | 3 cut(s) | 1155, 2307, 2318 |
| Sfr274I | CTCGAG | 2 cut(s) | 1735, 2387 |
| SinI | GGWCC | 2 cut(s) | 767, 2234 |
| SlaI | CTCGAG | 2 cut(s) | 1735, 2387 |
| SmiI | ATTTAAAT | 1 cut(s) | 1744 |
| SmlI | CTYRAG | 7 cut(s) | 92, 1658, 1735, 1781, 1925, 2238, 2387 |
| SmoI | CTYRAG | 7 cut(s) | 92, 1658, 1735, 1781, 1925, 2238, 2387 |
| SpeI | ACTAGT | 2 cut(s) | 133, 385 |
| SphI | GCATGC | 1 cut(s) | 1168 |
| SsiI | CCGC | 6 cut(s) | 259, 1145, 1567, 1753, 2169, 2432 |
| SstI | GAGCTC | 1 cut(s) | 99 |
| StyI | CCWWGG | 3 cut(s) | 72, 1906, 2291 |
| SwaI | ATTTAAAT | 1 cut(s) | 1744 |
| TaaI | ACNGT | 6 cut(s) | 284, 1156, 1296, 1343, 1558, 2342 |
| TaiI | ACGT | 4 cut(s) | 33, 222, 1717, 2548 |
| TaqI | TCGA | 8 cut(s) | 742, 1467, 1594, 1736, 2248, 2262, 2388, 2565 |
| TatI | WGTACW | 1 cut(s) | 1548 |
| TauI | GCSGC | 1 cut(s) | 2434 |
| TfiI | GAWTC | 6 cut(s) | 169, 328, 509, 1708, 2267, 2303 |
| TscAI | CASTG | 5 cut(s) | 289, 589, 1348, 1539, 1774 |
| TseFI | GTSAC | 1 cut(s) | 1916 |
| TseI | GCWGC | 5 cut(s) | 256, 758, 1078, 1882, 2502 |
| Tsp45I | GTSAC | 1 cut(s) | 1916 |
| TspGWI | ACGGA | 1 cut(s) | 1981 |
| TspRI | CASTG | 5 cut(s) | 289, 589, 1348, 1539, 1774 |
| Tth111I | GACNNNGTC | 1 cut(s) | 227 |
| VneI | GTGCAC | 2 cut(s) | 456, 470 |
| VpaK11BI | GGWCC | 2 cut(s) | 767, 2234 |
| VspI | ATTAAT | 2 cut(s) | 737, 753 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1011 |
| XapI | RAATTY | 5 cut(s) | 682, 837, 1334, 1888, 2034 |
| XbaI | TCTAGA | 2 cut(s) | 1009, 1448 |
| XceI | RCATGY | 7 cut(s) | 1003, 1039, 1168, 1222, 1392, 1601, 1731 |
| XhoI | CTCGAG | 2 cut(s) | 1735, 2387 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1590 |
| ZrmI | AGTACT | 1 cut(s) | 1550 |
| Zsp2I | ATGCAT | 2 cut(s) | 1005, 1276 |