Rw5G036370

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000159
Physical Location & Seq
Reverse (-)
63852477 .. 63853411
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G036370.1

Sequence Viewer

Length: 891 bp
ATGGAGTTTGTCTACGGCATAGCTGAGACAGTCTTGGGTAGGCTAGCTTCACATGCTTCCCAAGAAGTCTCCTTGGCATGGGGTGCCCAACTTGAGCTCACCAAGCTCAACAAGACCTTATCTGCCATCAAATTAGTGCTCGAGGATGCGGAGAAGAAGCAAGTGAGGAATCCCCTAATCACTCGTTGGTTAGGAAATCTCAAAGATGTTTGCCATGACGTTGATGATGTCTTAGACGAACTGGAGTTCCAAAAGTTGTGGTTGAAAGTGGAGATCGATAACTGTGGGAAGTTCAAAGGAAAGGTACGCCAATCTTTTTCCCGTTGGAATCCAGTAGTGTTTAACTTCAAAATGGGACATAAAGTGAAAGAGATTAGAGAACGACTGGTTGAAATTGATAATGAAAAGAGAGAGTTTGCTCTCCTTGAGGTTGCTAAGATAGTTAAAGATCATCATGCGCCCCAAGAGATGCATGATAATAAAAGAGAGACTGACTCTTTAGTGGAGGCCTCAGATATTATTGGGAGAGATAATGATAAAAAACAAATTATCAGCCATCTCTTACATAACACTGATATCTCTAGTGAGGATAATATTTCTATTATTTCTATCCTTGGTTTAGGAGGGTTGGGAAAGACAACTCTTGCTAAATTAGTGTATAATGATAGCATGGTAGAGGAGAATTTTGAGATGAAAATGTGGATATGTGTCTCAGAAAACTTTGATATCAGAACATTAATTCGTGGCATTATCAATGCTGCAATTAAACAAAAATGTGAGGATGAAAGTTTGGACCTTATGAAAAAAAGATTGCAAGATACTTTGCGAGTTAATTGGAGTAATGATAGAAAAATGGATTGGTTTAAAAAATCTGTTAAATGTGGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

296

Amino Acids

34.11

Weight (kDa)

6.48

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 94 3.8e-20 Rx N-terminal domain
NB-ARC PF00931 178 - 274 1.1e-15 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 12
AciI CCGC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 682
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 4 cut(s) 265, 295, 349, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 841, 873
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 5 cut(s) 23, 47, 97, 106, 888
AluI AGCT 5 cut(s) 23, 47, 97, 106, 888
Alw21I GWGCWC 2 cut(s) 99, 141
Alw26I GTCTC 4 cut(s) 20, 73, 482, 715
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 1 cut(s) 682
AseI ATTAAT 1 cut(s) 737
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 793
AsuHPI GGTGA 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 99
BarI GAAGNNNNNNTAC 2 cut(s) 31, 63
Bbv12I GWGCWC 2 cut(s) 99, 141
BbvI GCAGC 1 cut(s) 745
BccI CCATC 2 cut(s) 134, 564
BceAI ACGGC 1 cut(s) 31
BcoDI GTCTC 4 cut(s) 20, 73, 482, 715
BfaI CTAG 2 cut(s) 44, 582
BisI GCNGC 1 cut(s) 759
BlsI GCNGC 1 cut(s) 760
Bme18I GGWCC 1 cut(s) 793
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 793
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 2 cut(s) 136, 459
BmtI GCTAGC 1 cut(s) 47
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BpmI CTGGAG 1 cut(s) 263
BpuEI CTTGAG 2 cut(s) 113, 446
Bsa29I ATCGAT 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 72, 613
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 3 cut(s) 246, 332, 390
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 72, 613
BseGI GGATG 2 cut(s) 151, 787
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMII CTCAG 3 cut(s) 15, 525, 726
BseNI ACTGG 3 cut(s) 246, 332, 390
BseRI GAGGAG 1 cut(s) 692
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 745
BshFI GGCC 1 cut(s) 509
BshNI GGYRCC 1 cut(s) 83
BshVI ATCGAT 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 99, 141
BsiHKCI CYCGRG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 4 cut(s) 20, 73, 482, 715
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 1 cut(s) 509
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 88, 99, 141
Bsp143I GATC 2 cut(s) 273, 448
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 3 cut(s) 16, 524, 725
BspDI ATCGAT 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 85
BspOI GCTAGC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 83
BsrI ACTGG 3 cut(s) 246, 332, 390
BssECI CCNNGG 2 cut(s) 72, 613
BssMI GATC 2 cut(s) 273, 448
BssT1I CCWWGG 2 cut(s) 72, 613
Bst4CI ACNGT 2 cut(s) 31, 284
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 5 cut(s) 24, 232, 435, 511, 712
BstF5I GGATG 2 cut(s) 151, 787
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 2 cut(s) 276, 451
BstMAI GTCTC 4 cut(s) 20, 73, 482, 715
BstMBI GATC 2 cut(s) 273, 448
BstMWI GCNNNNNNNGC 3 cut(s) 53, 83, 103
BstNSI RCATGY 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 745
Bsu15I ATCGAT 1 cut(s) 276
BsuRI GGCC 1 cut(s) 509
BsuTUI ATCGAT 1 cut(s) 276
BtsCI GGATG 2 cut(s) 151, 787
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 793
ClaI ATCGAT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 305
CspCI CAANNNNNGTGG 2 cut(s) 239, 274
CviAII CATG 6 cut(s) 53, 78, 215, 455, 473, 670
CviJI RGCY 8 cut(s) 23, 43, 47, 97, 106, 509, 555, 888
CviKI_1 RGCY 8 cut(s) 23, 43, 47, 97, 106, 509, 555, 888
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 5 cut(s) 24, 232, 435, 511, 712
DpnI GATC 2 cut(s) 275, 450
DpnII GATC 2 cut(s) 273, 448
DraI TTTAAA 1 cut(s) 865
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 72, 613
Eco147I AGGCCT 1 cut(s) 509
Eco24I GRGCYC 1 cut(s) 99
Eco32I GATATC 2 cut(s) 577, 727
Eco47I GGWCC 1 cut(s) 793
Eco53kI GAGCTC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 97
EcoRV GATATC 2 cut(s) 577, 727
EcoT14I CCWWGG 2 cut(s) 72, 613
EcoT22I ATGCAT 1 cut(s) 474
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 72, 613
FaeI CATG 6 cut(s) 56, 81, 218, 458, 476, 673
FaqI GGGAC 1 cut(s) 369
FatI CATG 6 cut(s) 52, 77, 214, 454, 472, 669
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 759
FokI GGATG 2 cut(s) 158, 794
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 759
FspBI CTAG 2 cut(s) 44, 582
GlaI GCGC 1 cut(s) 459
GluI GCNGC 1 cut(s) 759
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 509
HhaI GCGC 1 cut(s) 460
Hin1II CATG 6 cut(s) 56, 81, 218, 458, 476, 673
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HinfI GANTC 3 cut(s) 169, 328, 494
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 514, 715, 731
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4III ACNGT 2 cut(s) 31, 284
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 3 cut(s) 472, 761, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 83, 103
HpyF3I CTNAG 5 cut(s) 24, 232, 435, 511, 712
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 6 cut(s) 56, 81, 218, 458, 476, 673
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 2 cut(s) 273, 448
LmnI GCTCC 1 cut(s) 885
LpnPI CCDG 3 cut(s) 227, 345, 371
Lsp1109I GCAGC 1 cut(s) 745
LweI GCATC 2 cut(s) 136, 459
MaeI CTAG 2 cut(s) 44, 582
MaeII ACGT 1 cut(s) 219
MalI GATC 2 cut(s) 275, 450
MboI GATC 2 cut(s) 273, 448
MboII GAAGA 1 cut(s) 166
MhlI GDGCHC 3 cut(s) 88, 99, 141
MluCI AATT 8 cut(s) 131, 393, 546, 650, 682, 738, 762, 832
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 9 cut(s) 136, 159, 421, 499, 520, 580, 617, 670, 772
Mph1103I ATGCAT 1 cut(s) 474
MseI TTAA 7 cut(s) 342, 444, 737, 765, 831, 864, 876
MwoI GCNNNNNNNGC 3 cut(s) 53, 83, 103
NdeII GATC 2 cut(s) 273, 448
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 6 cut(s) 56, 81, 218, 458, 476, 673
NlaIV GGNNCC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 140
PceI AGGCCT 1 cut(s) 509
PfeI GAWTC 2 cut(s) 169, 328
PkrI GCNGC 1 cut(s) 760
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 737
Psp124BI GAGCTC 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 793
PspXI VCTCGAGB 1 cut(s) 140
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 7 cut(s) 342, 444, 737, 765, 831, 864, 876
SatI GCNGC 1 cut(s) 759
Sau3AI GATC 2 cut(s) 273, 448
Sau96I GGNCC 1 cut(s) 793
SchI GAGTC 1 cut(s) 488
SduI GDGCHC 3 cut(s) 88, 99, 141
SfaNI GCATC 2 cut(s) 136, 459
Sfr274I CTCGAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 793
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 3 cut(s) 92, 140, 425
SmoI CTYRAG 3 cut(s) 92, 140, 425
Sse9I AATT 8 cut(s) 131, 393, 546, 650, 682, 738, 762, 832
SseBI AGGCCT 1 cut(s) 509
SsiI CCGC 1 cut(s) 149
SspI AATATT 1 cut(s) 595
SspMI CTAG 2 cut(s) 44, 582
SstI GAGCTC 1 cut(s) 99
StuI AGGCCT 1 cut(s) 509
StyI CCWWGG 2 cut(s) 72, 613
TaaI ACNGT 2 cut(s) 31, 284
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 141, 276
TasI AATT 8 cut(s) 131, 393, 546, 650, 682, 738, 762, 832
TfiI GAWTC 2 cut(s) 169, 328
Tru1I TTAA 7 cut(s) 342, 444, 737, 765, 831, 864, 876
Tru9I TTAA 7 cut(s) 342, 444, 737, 765, 831, 864, 876
TscAI CASTG 1 cut(s) 577
TseI GCWGC 1 cut(s) 758
TspDTI ATGAA 4 cut(s) 417, 707, 798, 815
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 793
VspI ATTAAT 1 cut(s) 737
XapI RAATTY 1 cut(s) 682
XceI RCATGY 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 2 cut(s) 44, 582
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.