Rmu_co8113786.1_g000001

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8113786.1
OG0000159
Physical Location & Seq
Forward (+)
1 .. 613
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8113786.1_g000001.1.cds

Sequence Viewer

Length: 560 bp
taagttaaaaaggcttccctattccatctgtaagctgctgaatttggagtacttggaccttcagtattgctacgcacttgaggagatacccaaagacatagggaacctgatcaacctacgaagcctgacgatgacaacacagcagacgtatttgccacaaggaattagacgcctcacctcacttcgatctttaggttttgcaggatgtgtcaatcttaaatctatgggcgaagagatcgaattcctcaacaaccttcgcaatttgtggattgggagatgtaataatttgggatccttgccaccaaatatgaaacacgctttagatactttgatcctcgaagattgcgaaaagcttcagatgagatcaggggaaggtcctcaaagtcttcgatcattggttatctggaattcaagtttggaggctttgcccccttggctcactgaagattctgcagttactctacagagcatagcacttaatcgatgtcataatctcacggcacttccggagttgatgaacttcaaattcctcgagcaactacgcattcaaaaatgctcta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

186

Amino Acids

21.25

Weight (kDa)

8.2

Isoelectric Point (pI)

64.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 506
AclWI GGATC 3 cut(s) 286, 299, 326
AcsI RAATTY 4 cut(s) 41, 240, 407, 525
AcuI CTGAAG 3 cut(s) 45, 339, 463
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 1 cut(s) 51
AgsI TTSAA 3 cut(s) 412, 524, 549
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AluBI AGCT 2 cut(s) 35, 353
AluI AGCT 2 cut(s) 35, 353
AlwI GGATC 3 cut(s) 286, 299, 326
Ama87I CYCGRG 1 cut(s) 531
Aor13HI TCCGGA 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 4 cut(s) 41, 240, 407, 525
Asp700I GAANNNNTTC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 56, 375
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 531
AvaII GGWCC 2 cut(s) 56, 375
BamHI GGATCC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 514
BclI TGATCA 1 cut(s) 109
BfmI CTRYAG 2 cut(s) 451, 462
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmcAI AGTACT 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 56, 375
BmeT110I CYCGRG 1 cut(s) 531
BmgT120I GGNCC 2 cut(s) 56, 375
BmiI GGNNCC 2 cut(s) 105, 293
BpiI GAAGAC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 506
BseAI TCCGGA 1 cut(s) 506
BseCI ATCGAT 1 cut(s) 482
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 482
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 1 cut(s) 507
BsmI GAATGC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 531
Bsp13I TCCGGA 1 cut(s) 506
Bsp143I GATC 7 cut(s) 109, 186, 235, 291, 331, 363, 390
BspDI ATCGAT 1 cut(s) 482
BspEI TCCGGA 1 cut(s) 506
BspLI GGNNCC 2 cut(s) 105, 293
BspMAI CTGCAG 1 cut(s) 455
BspPI GGATC 3 cut(s) 286, 299, 326
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 7 cut(s) 109, 186, 235, 291, 331, 363, 390
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 432
Bst6I CTCTTC 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 170
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 7 cut(s) 112, 189, 238, 294, 334, 366, 393
BstMBI GATC 7 cut(s) 109, 186, 235, 291, 331, 363, 390
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstSFI CTRYAG 2 cut(s) 451, 462
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
Bsu15I ATCGAT 1 cut(s) 482
BsuTUI ATCGAT 1 cut(s) 482
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 439
Cfr13I GGNCC 2 cut(s) 56, 375
ClaI ATCGAT 1 cut(s) 482
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 50
CviJI RGCY 6 cut(s) 14, 35, 124, 353, 423, 437
CviKI_1 RGCY 6 cut(s) 14, 35, 124, 353, 423, 437
CviQI GTAC 1 cut(s) 50
DpnI GATC 7 cut(s) 111, 188, 237, 293, 333, 365, 392
DpnII GATC 7 cut(s) 109, 186, 235, 291, 331, 363, 390
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 56, 375
Eco57I CTGAAG 3 cut(s) 45, 339, 463
Eco88I CYCGRG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 375
EcoRI GAATTC 2 cut(s) 240, 407
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaiI YATR 5 cut(s) 99, 225, 309, 471, 490
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
HapII CCGG 1 cut(s) 507
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 1 cut(s) 447
HpaII CCGG 1 cut(s) 507
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 2 cut(s) 404, 507
HpyAV CCTTC 3 cut(s) 69, 264, 366
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 201, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 170
Kpn2I TCCGGA 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 7 cut(s) 109, 186, 235, 291, 331, 363, 390
LpnPI CCDG 6 cut(s) 120, 138, 187, 352, 389, 520
Lsp1109I GCAGC 1 cut(s) 22
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 455
MalI GATC 7 cut(s) 111, 188, 237, 293, 333, 365, 392
MboI GATC 7 cut(s) 109, 186, 235, 291, 331, 363, 390
MboII GAAGA 4 cut(s) 243, 351, 378, 456
MflI RGATCY 1 cut(s) 291
MluCI AATT 7 cut(s) 41, 163, 240, 260, 284, 407, 525
MnlI CCTC 8 cut(s) 74, 183, 188, 255, 345, 388, 413, 540
MroI TCCGGA 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 352
MseI TTAA 3 cut(s) 6, 217, 478
MspI CCGG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 544
MwoI GCNNNNNNNGC 1 cut(s) 434
NdeII GATC 7 cut(s) 109, 186, 235, 291, 331, 363, 390
NlaIV GGNNCC 2 cut(s) 105, 293
PaeR7I CTCGAG 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PctI GAATGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 447
PkrI GCNGC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 375
PspN4I GGNNCC 2 cut(s) 105, 293
PspPI GGNCC 2 cut(s) 56, 375
PspPPI RGGWCCY 1 cut(s) 375
PspXI VCTCGAGB 1 cut(s) 531
PstI CTGCAG 1 cut(s) 455
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 3 cut(s) 6, 217, 478
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 7 cut(s) 109, 186, 235, 291, 331, 363, 390
Sau96I GGNCC 2 cut(s) 56, 375
ScaI AGTACT 1 cut(s) 51
SfcI CTRYAG 2 cut(s) 451, 462
Sfr274I CTCGAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 56, 375
SlaI CTCGAG 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 78, 531
SmoI CTYRAG 2 cut(s) 78, 531
Sse9I AATT 7 cut(s) 41, 163, 240, 260, 284, 407, 525
StyI CCWWGG 1 cut(s) 432
TaiI ACGT 1 cut(s) 150
TaqI TCGA 6 cut(s) 185, 238, 337, 389, 482, 532
TasI AATT 7 cut(s) 41, 163, 240, 260, 284, 407, 525
TatI WGTACW 1 cut(s) 49
TfiI GAWTC 1 cut(s) 447
Tru1I TTAA 3 cut(s) 6, 217, 478
Tru9I TTAA 3 cut(s) 6, 217, 478
TscAI CASTG 1 cut(s) 446
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 324, 531
TspRI CASTG 1 cut(s) 446
VpaK11BI GGWCC 2 cut(s) 56, 375
XapI RAATTY 4 cut(s) 41, 240, 407, 525
XhoI CTCGAG 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 352
ZrmI AGTACT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.