Rorug06G0429800

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000159
Physical Location & Seq
Forward (+)
56546471 .. 56548446
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0429800.1

Sequence Viewer

Length: 1023 bp
ATGGAAGCAGAGCAGCAAGGACCAACAACAATGGAGCCCATCCTCGGCTACTACACCTCGTACTTCTCACCTCGGGAGTTCGAAATCGCCGAAATCATGGTCGGACTTCCTGACATCATCTCCGAATTAGACGACCGCCCTCGAATTCGGGTCCCGTGGGGCCACAAGAAGAAGAGATCTGCGCTGGCTGTACAAGACCAAAGAGTTCGGAACAACAAGTCTTCGTCCTCGACTGTGCTTCGGCTTCGGTTGCCGTCGTCCTCGTCTTCCCCGAATCCTGGGTCGAAAGTTCCGGCCACTAATGTTGTCAAGGTCGAGAGGTCGAGCCCCAACACGCCGCTGTCGTTTGAATCCGATGAGAAGCCTAGTCAGTTGAGAAGTAAAGTGGTGGTCGGAAAGAGGAAAAGAGAGGAATGGCTGGAGGCGATAAATGGACTAGTGAAGCGCAAAGAATTGCTACATAAAGAGATACAGAATGTGAAGGATTATAAAGAAAAGCTGATTAAATTTAATTTGGTATTGCAGTCAAGGAAGCAAGAGCTGAAAAAGCAAAGATTGATTCAGAAAGAACCTCAATCGAAAATTGAGGAACCAAAGCTGAATCTTGATATGAAATTGGGCCAACCCACGCCCATACAAACATCCATAGTCATTTGTGCCCCTACGATTGTTGAACAAGAGCGTTATCATCAACTAAGTGCTCCTCATCAGTATCAAACCCTGGATCACACCGCTCAAACTCGAGGCGCAGTAATTATTGAGAATCATGGGTATCTATCATCTACTACTCAAGTGGCCTCAACCTCTTTGCCATCTAACAGTGTCGATGCTACTGGATTGAGATTGGTAAGCTACAATCCTGATCACGGCTTTTCTTCTTTTCCTAACCAGAATCGTGGCTCCGCCTTTGTTACCAAGAATCTCTATAAGGCTGTGTCTGCACAAAGAAGGCATGAGAGATATCAGAAAAATAGGGTTAAAAAAACCTCTCTTTTAGGTCAAAGACAGAGTCAAGAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

340

Amino Acids

38.66

Weight (kDa)

9.88

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AccBSI CCGCTC 1 cut(s) 734
AciI CCGC 4 cut(s) 136, 338, 732, 903
AclWI GGATC 1 cut(s) 732
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 144, 506
AfaI GTAC 2 cut(s) 62, 192
AfiI CCNNNNNNNGG 3 cut(s) 44, 278, 866
AgsI TTSAA 2 cut(s) 350, 674
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 2 cut(s) 277, 720
AluBI AGCT 4 cut(s) 499, 541, 598, 852
AluI AGCT 4 cut(s) 499, 541, 598, 852
Alw21I GWGCWC 1 cut(s) 703
AlwI GGATC 1 cut(s) 732
Ama87I CYCGRG 2 cut(s) 72, 741
AoxI GGCC 4 cut(s) 160, 294, 619, 795
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 2 cut(s) 144, 506
ArsI GACNNNNNNTTYG 5 cut(s) 84, 116, 266, 298, 994
AspLEI GCGC 3 cut(s) 184, 447, 749
AspS9I GGNCC 4 cut(s) 20, 151, 160, 619
AsuHPI GGTGA 1 cut(s) 60
AsuII TTCGAA 1 cut(s) 81
AvaI CYCGRG 2 cut(s) 72, 741
AvaII GGWCC 2 cut(s) 20, 151
BaeGI GKGCMC 1 cut(s) 661
BanII GRGCYC 2 cut(s) 39, 329
BbsI GAAGAC 2 cut(s) 213, 258
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 47, 820
BceAI ACGGC 2 cut(s) 238, 883
BciT130I CCWGG 2 cut(s) 279, 722
BclI TGATCA 1 cut(s) 862
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 2 cut(s) 366, 437
BglII AGATCT 1 cut(s) 176
BisI GCNGC 2 cut(s) 14, 338
BlsI GCNGC 2 cut(s) 15, 339
Bme1390I CCNGG 2 cut(s) 279, 722
Bme18I GGWCC 2 cut(s) 20, 151
BmeT110I CYCGRG 2 cut(s) 72, 741
BmgT120I GGNCC 4 cut(s) 20, 151, 160, 619
BmiI GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 901
BmrFI CCNGG 2 cut(s) 279, 722
BmsI GCATC 1 cut(s) 817
BpiI GAAGAC 2 cut(s) 213, 258
BpmI CTGGAG 1 cut(s) 440
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 774
BsaJI CCNNGG 5 cut(s) 43, 71, 155, 278, 720
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 278, 866
Bse1I ACTGG 1 cut(s) 838
BseBI CCWGG 2 cut(s) 279, 722
BseDI CCNNGG 5 cut(s) 43, 71, 155, 278, 720
BseGI GGATG 2 cut(s) 39, 641
BseLI CCNNNNNNNGG 3 cut(s) 44, 278, 866
BseNI ACTGG 1 cut(s) 838
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 924
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 4 cut(s) 162, 296, 621, 797
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 703
BsiHKCI CYCGRG 2 cut(s) 72, 741
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 44, 278, 866
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 4 cut(s) 162, 296, 621, 797
BsoBI CYCGRG 2 cut(s) 72, 741
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 4 cut(s) 39, 329, 661, 703
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 3 cut(s) 176, 724, 862
BspACI CCGC 4 cut(s) 136, 338, 732, 903
BspANI GGCC 4 cut(s) 162, 296, 621, 797
BspLI GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 901
BspPI GGATC 1 cut(s) 732
BspT104I TTCGAA 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 734
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 1 cut(s) 838
BssECI CCNNGG 5 cut(s) 43, 71, 155, 278, 720
BssMI GATC 3 cut(s) 176, 724, 862
Bst2UI CCWGG 2 cut(s) 279, 722
Bst4CI ACNGT 2 cut(s) 235, 821
Bst6I CTCTTC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 695
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 39, 641
BstHHI GCGC 3 cut(s) 184, 447, 749
BstKTI GATC 3 cut(s) 179, 727, 865
BstMBI GATC 3 cut(s) 176, 724, 862
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 250, 547, 938
BstNI CCWGG 2 cut(s) 279, 722
BstSCI CCNGG 2 cut(s) 277, 720
BstSLI GKGCMC 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 2 cut(s) 213, 258
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 896
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 4 cut(s) 162, 296, 621, 797
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 2 cut(s) 39, 641
BtsIMutI CAGTG 1 cut(s) 826
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 3 cut(s) 184, 447, 749
Cfr13I GGNCC 4 cut(s) 20, 151, 160, 619
Csp6I GTAC 2 cut(s) 61, 191
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 3 cut(s) 97, 767, 953
CviQI GTAC 2 cut(s) 61, 191
DdeI CTNAG 1 cut(s) 695
DpnI GATC 3 cut(s) 178, 726, 864
DpnII GATC 3 cut(s) 176, 724, 862
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 892
Eco24I GRGCYC 2 cut(s) 39, 329
Eco32I GATATC 1 cut(s) 962
Eco47I GGWCC 2 cut(s) 20, 151
Eco88I CYCGRG 2 cut(s) 72, 741
EcoO109I RGGNCCY 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 277, 720
EcoRV GATATC 1 cut(s) 962
EcoT38I GRGCYC 2 cut(s) 39, 329
FaeI CATG 3 cut(s) 100, 770, 956
FaqI GGGAC 1 cut(s) 137
FatI CATG 3 cut(s) 96, 766, 952
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 2 cut(s) 14, 338
FokI GGATG 2 cut(s) 26, 628
FriOI GRGCYC 2 cut(s) 39, 329
Fsp4HI GCNGC 2 cut(s) 14, 338
FspBI CTAG 2 cut(s) 366, 437
GlaI GCGC 3 cut(s) 183, 446, 748
GluI GCNGC 2 cut(s) 14, 338
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 4 cut(s) 162, 296, 621, 797
HapII CCGG 1 cut(s) 293
HhaI GCGC 3 cut(s) 184, 447, 749
Hin1II CATG 3 cut(s) 100, 770, 956
Hin6I GCGC 3 cut(s) 182, 445, 747
HinP1I GCGC 3 cut(s) 182, 445, 747
HinfI GANTC 8 cut(s) 274, 350, 559, 601, 763, 892, 919, 1009
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 60
Hpy188I TCNGA 7 cut(s) 104, 124, 210, 355, 395, 564, 966
Hpy188III TCNNGA 6 cut(s) 74, 110, 316, 605, 860, 1013
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 475, 942
HpyCH4III ACNGT 2 cut(s) 235, 821
HpyCH4V TGCA 2 cut(s) 523, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 547, 938
HpyF3I CTNAG 1 cut(s) 695
Hsp92II CATG 3 cut(s) 100, 770, 956
HspAI GCGC 3 cut(s) 182, 445, 747
KflI GGGWCCC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 3 cut(s) 176, 724, 862
LmnI GCTCC 3 cut(s) 34, 706, 905
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 817
MaeI CTAG 2 cut(s) 366, 437
MaeIII GTNAC 1 cut(s) 910
MalI GATC 3 cut(s) 178, 726, 864
MbiI CCGCTC 1 cut(s) 734
MboI GATC 3 cut(s) 176, 724, 862
MboII GAAGA 5 cut(s) 181, 184, 213, 258, 867
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 4 cut(s) 39, 329, 661, 703
MluCI AATT 8 cut(s) 125, 144, 452, 506, 511, 582, 614, 753
MlyI GAGTC 1 cut(s) 1018
MmeI TCCRAC 2 cut(s) 82, 373
MseI TTAA 3 cut(s) 504, 510, 978
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 279, 722
MvaI CCWGG 2 cut(s) 279, 722
MwoI GCNNNNNNNGC 3 cut(s) 250, 547, 938
NdeII GATC 3 cut(s) 176, 724, 862
NlaIII CATG 3 cut(s) 100, 770, 956
NlaIV GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 901
NmeAIII GCCGAG 1 cut(s) 24
NspV TTCGAA 1 cut(s) 81
PaeR7I CTCGAG 1 cut(s) 741
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 269, 341
PfeI GAWTC 7 cut(s) 274, 350, 559, 601, 763, 892, 919
PflFI GACNNNGTC 1 cut(s) 1008
PkrI GCNGC 2 cut(s) 15, 339
PleI GAGTC 1 cut(s) 1017
PpsI GAGTC 1 cut(s) 1017
PpuMI RGGWCCY 1 cut(s) 151
PsiI TTATAA 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 277, 720
PspGI CCWGG 2 cut(s) 277, 720
PspN4I GGNNCC 6 cut(s) 36, 152, 153, 161, 591, 901
PspPI GGNCC 4 cut(s) 20, 151, 160, 619
PspPPI RGGWCCY 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 741
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 1008
RsaI GTAC 2 cut(s) 62, 192
RsaNI GTAC 2 cut(s) 61, 191
SaqAI TTAA 3 cut(s) 504, 510, 978
SatI GCNGC 2 cut(s) 14, 338
Sau3AI GATC 3 cut(s) 176, 724, 862
Sau96I GGNCC 4 cut(s) 20, 151, 160, 619
SchI GAGTC 1 cut(s) 1018
ScrFI CCNGG 2 cut(s) 279, 722
SduI GDGCHC 4 cut(s) 39, 329, 661, 703
SfaNI GCATC 1 cut(s) 817
Sfr274I CTCGAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 2 cut(s) 20, 151
SlaI CTCGAG 1 cut(s) 741
SmlI CTYRAG 2 cut(s) 741, 789
SmoI CTYRAG 2 cut(s) 741, 789
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 8 cut(s) 125, 144, 452, 506, 511, 582, 614, 753
SsiI CCGC 4 cut(s) 136, 338, 732, 903
SspMI CTAG 2 cut(s) 366, 437
StyD4I CCNGG 2 cut(s) 277, 720
TaaI ACNGT 2 cut(s) 235, 821
TaqI TCGA 9 cut(s) 81, 142, 230, 284, 315, 323, 578, 742, 825
TasI AATT 8 cut(s) 125, 144, 452, 506, 511, 582, 614, 753
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 7 cut(s) 274, 350, 559, 601, 763, 892, 919
Tru1I TTAA 3 cut(s) 504, 510, 978
Tru9I TTAA 3 cut(s) 504, 510, 978
TscAI CASTG 1 cut(s) 826
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 626
TspRI CASTG 1 cut(s) 826
Tth111I GACNNNGTC 1 cut(s) 1008
VpaK11BI GGWCC 2 cut(s) 20, 151
XapI RAATTY 2 cut(s) 144, 506
XhoI CTCGAG 1 cut(s) 741
XspI CTAG 2 cut(s) 366, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.