Rh5CG077900

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000159
Physical Location & Seq
Reverse (-)
5873714 .. 5876497
2784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG077900.1

Sequence Viewer

Length: 2784 bp
ATGGAGTCTTTTGCCTCAAACAAAGCACAGATCGTCTTCGAAAAGCTAGCTTCCCGTTCTTACGAAGAAATTCACATCGCATTGAGTGTCAAAGTTGAGCTGAACAAGCTTGAGGAGACTTTATCAAGCATCACTTTACTGCTCCTGGATGCGGAGGAAAAGCAGATGAACAACCGCGTACTCACTGAGTGGTTGGGAAAGCTCAAAGATGTTTGCTACGATATTGATGATGAGCTCGATGACTTTGCATTCAAACAGTTGCGGATGCAAGTGCTTGTCCGTGGAAGCGTGGCCGGAAAGGTATGCCATCTTTTTTCACGTTGGAATTCACTGGTGTTTCCAATCTATACTGGTCATAAAATCAAACAGATTAGAGCAAGATTGAATGAAATTGCAGCTGCCAAAGATCAGTTTCATCTTAAAGAAAGAGCCGGAGAGTGGCATGGTCTGCACATGAACAGGGAGACCTATTCTTTTGTGCAAGTGTCGGATGTTATTGGGAGAGATAATGATAAAGAAAATATTATCATTCATCTCTTGAAGGACACTGACCATGCAGATCAAAATGTTTCTGTTATTTCTATTGCTGGATTAGGAGGTCTGGGAAAGACTACACTTGCTAAATTGGTGTATAATGATTCCGCGGTGGTGAGAAACTTTGACTTGAGGATGTGGGTGTGTGTTTCTTATGATTTTGATAATAAGTCATTGGTGCGTAAAATTATTGGTTCTGCAACTAACCAAAAATGTGAAGAGGATAGTTTTGAAAATCTGGCTATTAAGTTGCAAAATGAATTGAAAGACATAAAATTTTTGTTAGTGTTAGATGATGTTTGGGATAAGGAGCCGATGGGGATATCAATCACGAAGTGGATTGAATTGAAAGCTTTACTAAATATTGGTGCTCGGGGTAGTAAAATCATTGTAACAACACGCAATATGTCCGTTGTTTCACTTTTGGGATCTGTGGATTACCAGCACCCTTTAGAAGGTCTTTCTCACGAGGATTGTATGTCTTTGTTTGTAGAAAGGGCATTTAGGAAAGAAGAAGAAAAAAACTTTCCTCACTTGATGGAAGTTGCAAACAATATTGTGAAGAAGTGTGGAGGGGTTCCTCTGGCTGTGACCACTCTAGGGGGCATGCTCTATTTGAAAAGGGAACTACGTGACTGGTTGCATGTAAGAGATAATGATATATGGAAATTAGAGCAAAGAGAAGACGGTATTCTACCTGCATTGAAACTAAGCTATGATGCACTACCACTCTACTTAAAACCTTGTTTTGCCTTTTGCTCACTTTTCCCTAAGGATTATGAATTTGACAGCGTCGAGATCATCACAATGTGGATGGCACAAGGCTTCCTTCACTCCTCTACCAGAAATGAACAAGATTTTGAAGAGATTGGCCTAGATTACATGAGGCAGCTATGTTCTAGATCTTTCTTTCACATTGAAGAAGATGATTTCTTTTGTATGAGGTTTAAGATGCATGATTTAATTCATGATTTAGCCATCTTGGTGGCACAGGTAGAGTACTCATCTGTCAATTTTCATCAATCTGGTTCTTTTGATAGGGTTGGGCACCTGTCAATATATACAAAGGACTTGTCTGACAATGAGGAAGTCCCTGATTTCATACTCCAGTTAGGCAAGGTGAGAACCATTCTCATTCCAGAAGAGAAGGTTGGCATCACTGGTCGATCTTTCATAAAAAAATGCATTTCCAGATTCAAATATTTGCGGTTGCTAGATCTGCGTAGCTCAACTTTCGACGAGTTGCCAAGTTCCATTGGTAACTTGAGTCACTTGAGATATGTGGACCTATCATACAATTGCCACATAAAAAGGGTTCCTGATTGCATTTGCAAGCTGCAGCATCTACAAACCTTATTGCTTTCACATTGTGAGGAGCTTGAGAAGTTTCCCAAGGACATAGGGAACCTGATTAGCCTCAGGTACTTGGCACTAACTACAAAGAAAACTTGTTTGCCAACAGGAATCGATCGTCTCACTTCTCTTCGCATTTTACATGTTGTTGCATGCCGAAACCTTCTTTCTTTGGAAGGGTTGCCCCGCCTCACTCACCTCAAAATGTTCATTATTGAGGAATGTCCAGTTCTGAGGTCTTTGCCGCATAACATGAAATATTCAACTGCATTAGAGACTTTAATCATCTCTGACTGTGAGAAGCTTGATCTGTTGAGTCTTGAAGAATGCGTTCGAGGTCTAAGATCATTCTGGATCTTGAAATCAAAGTTGAAGAACTTTCCCCTTTGGCTTAAAGAGTGTGCAAGTACTCTACAAAACATATGTATTGCAAACTGTCAGAATCTCATTGCACTTCCGGAGTGGCTGCAAAGCTTCAAGTTGCTTGAAAAGCTAGTGATTGAAAACTGCCCCCAAGTGCCAGCTTTGCCAGAGGGGATGCATTGCCTCACAACATTGAGAGAATTGAAGATCAGTGGGTGTCCTCGATTGATGGAAAGATGCAACAGGCACGGAGGTATAGATTGGTTCAAAATTGCTCATGTCACAAAGATAATGATTGGAGGTGTCAACAACCACACTCCGGTGGATTGTAGCTCAAGTTCCCCTCCCATTCCCCTTCCCCCTCCCCCTCCCCCTCCCCTTCCGCTTGGGACTACTTATGTCCCCTCCCCTTCCCTTTCCTCTAGATCTTCCGCTTGGGACTACTTCTTTTCGGTCCCCCGTTCCTTTTCGGTCGATGCTTCCCATCACGAAGACAACACTACTCATTCATCTACAACATCTGCTGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

927

Amino Acids

105.75

Weight (kDa)

6.32

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 94 7e-18 Rx N-terminal domain
NB-ARC PF00931 170 - 350 6e-33 NB-ARC domain
WHD_DRP PF23559 433 - 504 2.5e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 573 - 798 1.3e-21 Leucine-rich repeat region
LRR_8 PF13855 580 - 635 4.9e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1240
AccB1I GGYRCC 1 cut(s) 1581
AccII CGCG 2 cut(s) 177, 644
AccIII TCCGGA 1 cut(s) 2344
AclWI GGATC 2 cut(s) 970, 2249
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 4 cut(s) 69, 325, 809, 1316
AdeI CACNNNGTG 4 cut(s) 189, 870, 1344, 1904
AfaI GTAC 4 cut(s) 180, 1535, 1958, 2296
AfiI CCNNNNNNNGG 5 cut(s) 151, 438, 989, 1134, 2569
AflIII ACRYGT 1 cut(s) 2029
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 1668, 1700
AleI CACNNNNGTG 1 cut(s) 2570
Alw21I GWGCWC 2 cut(s) 237, 907
Alw26I GTCTC 4 cut(s) 110, 458, 2012, 2156
AlwI GGATC 2 cut(s) 970, 2249
Ama87I CYCGRG 1 cut(s) 906
Aor13HI TCCGGA 1 cut(s) 2344
AoxI GGCC 2 cut(s) 291, 1405
ApeKI GCWGC 6 cut(s) 395, 398, 1423, 1870, 1873, 2353
ApoI RAATTY 4 cut(s) 69, 325, 809, 1316
ArsI GACNNNNNNTTYG 2 cut(s) 1592, 1624
Asp700I GAANNNNTTC 2 cut(s) 69, 2217
AspS9I GGNCC 2 cut(s) 1819, 2704
AsuHPI GGTGA 3 cut(s) 661, 1666, 2075
AsuII TTCGAA 1 cut(s) 39
AsuNHI GCTAGC 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 906
AvaII GGWCC 2 cut(s) 1819, 2704
AxyI CCTNAGG 2 cut(s) 1305, 1952
BaeGI GKGCMC 1 cut(s) 1584
BanI GGYRCC 1 cut(s) 1581
BanII GRGCYC 1 cut(s) 237
BauI CACGAG 1 cut(s) 1001
BbsI GAAGAC 3 cut(s) 28, 1224, 2748
Bbv12I GWGCWC 2 cut(s) 237, 907
BbvI GCAGC 6 cut(s) 385, 407, 1435, 1857, 1885, 2340
BccI CCATC 8 cut(s) 315, 844, 1066, 1342, 1520, 2473, 2742, 2771
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 1 cut(s) 146
BcoDI GTCTC 4 cut(s) 110, 458, 2012, 2156
BfaI CTAG 7 cut(s) 47, 1133, 1409, 1434, 1748, 2381, 2673
BfmI CTRYAG 1 cut(s) 1871
BfuAI ACCTGC 1 cut(s) 1240
BglII AGATCT 3 cut(s) 1436, 1750, 2675
BisI GCNGC 7 cut(s) 396, 399, 1424, 1871, 1874, 2132, 2354
BlsI GCNGC 7 cut(s) 397, 400, 1425, 1872, 1875, 2133, 2355
BmcAI AGTACT 2 cut(s) 1535, 2296
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 1819, 2704
BmeT110I CYCGRG 1 cut(s) 906
BmgT120I GGNCC 2 cut(s) 1819, 2704
BmiI GGNNCC 6 cut(s) 846, 1113, 1583, 1851, 1940, 2706
BmrFI CCNGG 1 cut(s) 146
BmtI GCTAGC 1 cut(s) 50
BpiI GAAGAC 3 cut(s) 28, 1224, 2748
BpmI CTGGAG 1 cut(s) 1625
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 6 cut(s) 131, 685, 1819, 1828, 1934, 2569
Bsa29I ATCGAT 1 cut(s) 2001
BsaAI YACGTR 1 cut(s) 1166
BsaBI GATNNNNATC 1 cut(s) 860
BsaI GGTCTC 1 cut(s) 458
BsaJI CCNNGG 3 cut(s) 280, 642, 1926
BsaWI WCCGGW 2 cut(s) 2344, 2569
Bsc4I CCNNNNNNNGG 5 cut(s) 151, 438, 989, 1134, 2569
Bse1I ACTGG 6 cut(s) 336, 355, 1175, 1642, 1699, 2114
Bse21I CCTNAGG 2 cut(s) 1305, 1952
Bse3DI GCAATG 2 cut(s) 2334, 2428
Bse8I GATNNNNATC 1 cut(s) 860
BseAI TCCGGA 1 cut(s) 2344
BseBI CCWGG 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 2001
BseDI CCNNGG 3 cut(s) 280, 642, 1926
BseGI GGATG 6 cut(s) 154, 270, 496, 675, 1353, 2430
BseJI GATNNNNATC 1 cut(s) 860
BseLI CCNNNNNNNGG 5 cut(s) 151, 438, 989, 1134, 2569
BseMI GCAATG 2 cut(s) 2334, 2428
BseMII CTCAG 3 cut(s) 177, 1966, 2111
BseNI ACTGG 6 cut(s) 336, 355, 1175, 1642, 1699, 2114
BseRI GAGGAG 3 cut(s) 128, 1360, 1922
BseSI GKGCMC 1 cut(s) 1584
BseXI GCAGC 6 cut(s) 385, 407, 1435, 1857, 1885, 2340
BsgI GTGCAG 1 cut(s) 434
Bsh1236I CGCG 2 cut(s) 177, 644
Bsh1285I CGRYCG 2 cut(s) 2005, 2724
BshFI GGCC 2 cut(s) 293, 1407
BshNI GGYRCC 1 cut(s) 1581
BshVI ATCGAT 1 cut(s) 2001
BsiEI CGRYCG 2 cut(s) 2005, 2724
BsiHKAI GWGCWC 2 cut(s) 237, 907
BsiHKCI CYCGRG 1 cut(s) 906
BsiSI CCGG 4 cut(s) 294, 432, 2345, 2570
BslFI GGGAC 5 cut(s) 1610, 2636, 2653, 2690, 2702
BslI CCNNNNNNNGG 5 cut(s) 151, 438, 989, 1134, 2569
BsmAI GTCTC 4 cut(s) 110, 458, 2012, 2156
BsmBI CGTCTC 1 cut(s) 2012
BsmFI GGGAC 5 cut(s) 1610, 2636, 2653, 2690, 2702
BsmI GAATGC 2 cut(s) 248, 2219
BsnI GGCC 2 cut(s) 293, 1407
Bso31I GGTCTC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 906
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 3 cut(s) 237, 907, 1584
Bsp13I TCCGGA 1 cut(s) 2344
BspANI GGCC 2 cut(s) 293, 1407
BspCNI CTCAG 3 cut(s) 178, 1965, 2112
BspDI ATCGAT 1 cut(s) 2001
BspEI TCCGGA 1 cut(s) 2344
BspFNI CGCG 2 cut(s) 177, 644
BspHI TCATGA 1 cut(s) 1501
BspLI GGNNCC 6 cut(s) 846, 1113, 1583, 1851, 1940, 2706
BspMAI CTGCAG 1 cut(s) 1875
BspMI ACCTGC 1 cut(s) 1240
BspOI GCTAGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 970, 2249
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 1581
BspTNI GGTCTC 1 cut(s) 458
BsrDI GCAATG 2 cut(s) 2334, 2428
BsrI ACTGG 6 cut(s) 336, 355, 1175, 1642, 1699, 2114
BssECI CCNNGG 3 cut(s) 280, 642, 1926
BssSI CACGAG 1 cut(s) 1001
BssT1I CCWWGG 1 cut(s) 1926
Bst2BI CACGAG 1 cut(s) 1001
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 4 cut(s) 258, 1223, 2183, 2324
Bst6I CTCTTC 4 cut(s) 747, 1392, 1671, 2022
BstAPI GCANNNNNTGC 1 cut(s) 448
BstBAI YACGTR 1 cut(s) 1166
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 5 cut(s) 48, 1142, 1868, 2041, 2409
BstDEI CTNAG 6 cut(s) 186, 1244, 1305, 1952, 2120, 2228
BstDSI CCRYGG 2 cut(s) 280, 642
BstENI CCTNNNNNAGG 1 cut(s) 987
BstF5I GGATG 6 cut(s) 154, 270, 496, 675, 1353, 2430
BstFNI CGCG 2 cut(s) 177, 644
BstMAI GTCTC 4 cut(s) 110, 458, 2012, 2156
BstMCI CGRYCG 2 cut(s) 2005, 2724
BstMWI GCNNNNNNNGC 5 cut(s) 106, 448, 1753, 2377, 2413
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 4 cut(s) 1144, 1181, 2033, 2043
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 1871
BstSLI GKGCMC 1 cut(s) 1584
BstUI CGCG 2 cut(s) 177, 644
BstV1I GCAGC 6 cut(s) 385, 407, 1435, 1857, 1885, 2340
BstV2I GAAGAC 3 cut(s) 28, 1224, 2748
BstX2I RGATCY 5 cut(s) 962, 1436, 1750, 2241, 2675
BstXI CCANNNNNNTGG 1 cut(s) 1519
BstYI RGATCY 5 cut(s) 962, 1436, 1750, 2241, 2675
Bsu15I ATCGAT 1 cut(s) 2001
Bsu36I CCTNAGG 2 cut(s) 1305, 1952
BsuRI GGCC 2 cut(s) 293, 1407
BsuTUI ATCGAT 1 cut(s) 2001
BtgI CCRYGG 2 cut(s) 280, 642
BtgZI GCGATG 1 cut(s) 61
BtsCI GGATG 6 cut(s) 154, 270, 496, 675, 1353, 2430
BtsIMutI CAGTG 5 cut(s) 183, 329, 546, 1692, 2467
BveI ACCTGC 1 cut(s) 1240
Cac8I GCNNGC 5 cut(s) 48, 1142, 1868, 2041, 2409
CciI TCATGA 1 cut(s) 1501
Cfr13I GGNCC 2 cut(s) 1819, 2704
Cfr42I CCGCGG 1 cut(s) 645
ClaI ATCGAT 1 cut(s) 2001
CseI GACGC 1 cut(s) 1315
Csp6I GTAC 4 cut(s) 179, 1534, 1957, 2295
CviQI GTAC 4 cut(s) 179, 1534, 1957, 2295
DdeI CTNAG 6 cut(s) 186, 1244, 1305, 1952, 2120, 2228
DraIII CACNNNGTG 4 cut(s) 189, 870, 1344, 1904
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 4 cut(s) 747, 1392, 1671, 2022
EarI CTCTTC 4 cut(s) 747, 1392, 1671, 2022
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 1926
Eco24I GRGCYC 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 458
Eco32I GATATC 1 cut(s) 858
Eco47I GGWCC 2 cut(s) 1819, 2704
Eco53kI GAGCTC 1 cut(s) 235
Eco81I CCTNAGG 2 cut(s) 1305, 1952
Eco88I CYCGRG 1 cut(s) 906
EcoICRI GAGCTC 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 987
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 144
EcoRV GATATC 1 cut(s) 858
EcoT14I CCWWGG 1 cut(s) 1926
EcoT22I ATGCAT 3 cut(s) 1491, 1721, 2430
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 1926
Esp3I CGTCTC 1 cut(s) 2012
FalI AAGNNNNNCTT 4 cut(s) 118, 150, 1347, 1379
FaqI GGGAC 5 cut(s) 1610, 2636, 2653, 2690, 2702
FauI CCCGC 1 cut(s) 2081
FauNDI CATATG 1 cut(s) 2309
Fnu4HI GCNGC 7 cut(s) 396, 399, 1424, 1871, 1874, 2132, 2354
FokI GGATG 6 cut(s) 161, 277, 503, 682, 1360, 2437
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 7 cut(s) 396, 399, 1424, 1871, 1874, 2132, 2354
FspBI CTAG 7 cut(s) 47, 1133, 1409, 1434, 1748, 2381, 2673
GluI GCNGC 7 cut(s) 396, 399, 1424, 1871, 1874, 2132, 2354
GsuI CTGGAG 1 cut(s) 1625
HaeIII GGCC 2 cut(s) 293, 1407
HapII CCGG 4 cut(s) 294, 432, 2345, 2570
HgaI GACGC 1 cut(s) 1315
HincII GTYRAC 1 cut(s) 2557
HindII GTYRAC 1 cut(s) 2557
HindIII AAGCTT 4 cut(s) 107, 885, 2189, 2359
HinfI GANTC 7 cut(s) 5, 638, 1728, 1801, 1998, 2203, 2329
HpaII CCGG 4 cut(s) 294, 432, 2345, 2570
HphI GGTGA 3 cut(s) 661, 1666, 2075
Hpy166II GTNNAC 2 cut(s) 1819, 2557
Hpy188I TCNGA 5 cut(s) 490, 1612, 2121, 2179, 2328
Hpy8I GTNNAC 2 cut(s) 1819, 2557
Hpy99I CGWCG 2 cut(s) 1331, 1775
HpyAV CCTTC 9 cut(s) 535, 983, 1373, 1675, 2057, 2060, 2615, 2639, 2670
HpyCH4III ACNGT 4 cut(s) 258, 1223, 2183, 2324
HpyCH4IV ACGT 2 cut(s) 319, 1165
HpyF10VI GCNNNNNNNGC 5 cut(s) 106, 448, 1753, 2377, 2413
HpyF3I CTNAG 6 cut(s) 186, 1244, 1305, 1952, 2120, 2228
HpySE526I ACGT 2 cut(s) 319, 1165
Kpn2I TCCGGA 1 cut(s) 2344
KspI CCGCGG 1 cut(s) 645
LmnI GCTCC 3 cut(s) 147, 844, 1909
Lsp1109I GCAGC 6 cut(s) 385, 407, 1435, 1857, 1885, 2340
MaeI CTAG 7 cut(s) 47, 1133, 1409, 1434, 1748, 2381, 2673
MaeII ACGT 2 cut(s) 319, 1165
MaeIII GTNAC 6 cut(s) 925, 1123, 1166, 1793, 1802, 2530
MfeI CAATTG 1 cut(s) 1831
MflI RGATCY 5 cut(s) 962, 1436, 1750, 2241, 2675
MhlI GDGCHC 3 cut(s) 237, 907, 1584
MlyI GAGTC 3 cut(s) 14, 1810, 2212
MmeI TCCRAC 2 cut(s) 302, 468
Mph1103I ATGCAT 3 cut(s) 1491, 1721, 2430
MroI TCCGGA 1 cut(s) 2344
MroXI GAANNNNTTC 2 cut(s) 69, 2217
MseI TTAA 7 cut(s) 420, 780, 1271, 1482, 1496, 2168, 2280
MslI CAYNNNNRTG 3 cut(s) 1340, 1517, 2570
MspA1I CMGCKG 2 cut(s) 398, 644
MspI CCGG 4 cut(s) 294, 432, 2345, 2570
MspR9I CCNGG 1 cut(s) 146
MunI CAATTG 1 cut(s) 1831
Mva1269I GAATGC 2 cut(s) 248, 2219
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 2 cut(s) 177, 644
MwoI GCNNNNNNNGC 5 cut(s) 106, 448, 1753, 2377, 2413
NdeI CATATG 1 cut(s) 2309
NheI GCTAGC 1 cut(s) 46
NlaIV GGNNCC 6 cut(s) 846, 1113, 1583, 1851, 1940, 2706
NmuCI GTSAC 4 cut(s) 1123, 1166, 1802, 2530
NsiI ATGCAT 3 cut(s) 1491, 1721, 2430
NspI RCATGY 4 cut(s) 1144, 1181, 2033, 2043
NspV TTCGAA 1 cut(s) 39
OliI CACNNNNGTG 1 cut(s) 2570
PaeI GCATGC 2 cut(s) 1144, 2043
PagI TCATGA 1 cut(s) 1501
PciI ACATGT 1 cut(s) 2029
PctI GAATGC 2 cut(s) 248, 2219
PdmI GAANNNNTTC 2 cut(s) 69, 2217
PfeI GAWTC 4 cut(s) 638, 1728, 1998, 2329
PflFI GACNNNGTC 1 cut(s) 1325
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 7 cut(s) 397, 400, 1425, 1872, 1875, 2133, 2355
Ple19I CGATCG 1 cut(s) 2005
PleI GAGTC 3 cut(s) 13, 1809, 2211
PpsI GAGTC 3 cut(s) 13, 1809, 2211
Ppu21I YACGTR 1 cut(s) 1166
PscI ACATGT 1 cut(s) 2029
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 6 cut(s) 846, 1113, 1583, 1851, 1940, 2706
PspPI GGNCC 2 cut(s) 1819, 2704
PsrI GAACNNNNNNTAC 2 cut(s) 2572, 2604
PstI CTGCAG 1 cut(s) 1875
PsuI RGATCY 5 cut(s) 962, 1436, 1750, 2241, 2675
PsyI GACNNNGTC 1 cut(s) 1325
PvuI CGATCG 1 cut(s) 2005
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 4 cut(s) 180, 1535, 1958, 2296
RsaNI GTAC 4 cut(s) 179, 1534, 1957, 2295
RseI CAYNNNNRTG 3 cut(s) 1340, 1517, 2570
SacI GAGCTC 1 cut(s) 237
SacII CCGCGG 1 cut(s) 645
SaqAI TTAA 7 cut(s) 420, 780, 1271, 1482, 1496, 2168, 2280
SatI GCNGC 7 cut(s) 396, 399, 1424, 1871, 1874, 2132, 2354
Sau96I GGNCC 2 cut(s) 1819, 2704
ScaI AGTACT 2 cut(s) 1535, 2296
SchI GAGTC 3 cut(s) 14, 1810, 2212
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 3 cut(s) 237, 907, 1584
SfcI CTRYAG 1 cut(s) 1871
Sfr303I CCGCGG 1 cut(s) 645
SfuI TTCGAA 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 645
SinI GGWCC 2 cut(s) 1819, 2704
SmiMI CAYNNNNRTG 3 cut(s) 1340, 1517, 2570
SmlI CTYRAG 6 cut(s) 110, 664, 1798, 1807, 1913, 2584
SmoI CTYRAG 6 cut(s) 110, 664, 1798, 1807, 1913, 2584
SphI GCATGC 2 cut(s) 1144, 2043
SspI AATATT 5 cut(s) 523, 898, 1090, 1736, 2147
SspMI CTAG 7 cut(s) 47, 1133, 1409, 1434, 1748, 2381, 2673
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 1926
TaaI ACNGT 4 cut(s) 258, 1223, 2183, 2324
TaiI ACGT 2 cut(s) 322, 1168
TaqI TCGA 9 cut(s) 39, 237, 1329, 1699, 1770, 2001, 2221, 2473, 2724
TaqII GACCGA 2 cut(s) 2692, 2710
TatI WGTACW 2 cut(s) 1533, 2294
TauI GCSGC 1 cut(s) 2134
TfiI GAWTC 4 cut(s) 638, 1728, 1998, 2329
Tru1I TTAA 7 cut(s) 420, 780, 1271, 1482, 1496, 2168, 2280
Tru9I TTAA 7 cut(s) 420, 780, 1271, 1482, 1496, 2168, 2280
TscAI CASTG 5 cut(s) 190, 336, 553, 1699, 2467
TseFI GTSAC 4 cut(s) 1123, 1166, 1802, 2530
TseI GCWGC 6 cut(s) 395, 398, 1423, 1870, 1873, 2353
Tsp45I GTSAC 4 cut(s) 1123, 1166, 1802, 2530
TspGWI ACGGA 3 cut(s) 269, 934, 2514
TspRI CASTG 5 cut(s) 190, 336, 553, 1699, 2467
Tth111I GACNNNGTC 1 cut(s) 1325
VpaK11BI GGWCC 2 cut(s) 1819, 2704
XagI CCTNNNNNAGG 1 cut(s) 987
XapI RAATTY 4 cut(s) 69, 325, 809, 1316
XbaI TCTAGA 2 cut(s) 1433, 2672
XceI RCATGY 4 cut(s) 1144, 1181, 2033, 2043
XmnI GAANNNNTTC 2 cut(s) 69, 2217
XspI CTAG 7 cut(s) 47, 1133, 1409, 1434, 1748, 2381, 2673
ZrmI AGTACT 2 cut(s) 1535, 2296
Zsp2I ATGCAT 3 cut(s) 1491, 1721, 2430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.