Rorug06G0430100

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000159
Physical Location & Seq
Reverse (-)
56558276 .. 56561780
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0430100.1

Sequence Viewer

Length: 1125 bp
ATGTCTTCAGAGAGCTCTCCTCCTCTGATTGCAGCTCAGCTCAATCACCTCGCTCTTCACTTCCCTCTTCTCGCTAAGATTGAGCCTAAGTGGTCTGGTAGCAAAGACTACAGCGGAGTTCTTGATCGGTTTACCTTGGCCATTTCCTACTGTCTAGACTTTATCAAATGGGATGTTATATTTGATGCGGAGTATCCGATGTCTGCACCGGATATTATATTCGGACCTGAAGATGAAAGTTTTCAGCAGTTTCTTGTATTGCATGGTGAAGATCCGAAGTCTCCCATGAACCGTTTGGGTGGTTGGGATAGCAGAGACCCTACGCAGCTCATGCTTCTCGTTCAAGAACTGAGAGATCAATACATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGACCGCGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCCGGATATGATAAGCCAGAGGAGGTCAAATTTGCAGTGCCCCTAGTAGATACGAACATAAACAAAATGGTGCCCGGGTGCCCCTGGATATATCCACAGAAGATATACTTGCAGGTTATATATCCTGTTGAGAACAAATTTGTTTCCACCCCATCAGCTCCTCGTTTAAAACTAGTAGCTACACCAGACTTGAAGACACTATTTTCTATAGATGATGTCAAACTTCCTACATGGTTGACGGGGATGTGCATGGCTGAATATCTCCCCCCTCTTGAAGAGACTCTTGAAAAACAGGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCGTTCAGTTTGGAAGACCAGTGGAAGCTGATCCGATCTTTTGCAGAAAGGCAACGTTTCTAGCTGCTTCTGGAGTTTTCACATTCCTGGTTCATTTAACAATTACAACTCAGTTTCCAAAGCAACCGCCAGCTATAGTGCTTCAAAGTTCCCAGCATTTCAACCCCCAAGGTGTGCCTATCAAATCACTGCCGCTGACTGATTATCCATTTAGCCCAAGATGGGAAGCATCGCTAATGGCTGAACGAATATGGGACTTTTTGGCCGATGAAGCCTTGATCTTCAAGAAGTACTGCAACGAGCAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

374

Amino Acids

42.71

Weight (kDa)

5.08

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRE PF06113 37 - 325 1.9e-35 Brain and reproductive organ-expressed protein (BRE)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 568
AccB1I GGYRCC 2 cut(s) 535, 543
AccII CGCG 1 cut(s) 408
AccIII TCCGGA 1 cut(s) 467
AciI CCGC 5 cut(s) 114, 188, 406, 941, 1007
AclI AACGTT 1 cut(s) 869
AclWI GGATC 2 cut(s) 266, 839
AcoI YGGCCR 2 cut(s) 138, 1077
AcsI RAATTY 3 cut(s) 413, 494, 602
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 1106
AfiI CCNNNNNNNGG 1 cut(s) 1036
AgsI TTSAA 9 cut(s) 344, 398, 419, 658, 740, 752, 959, 976, 1099
AhlI ACTAGT 1 cut(s) 637
AjnI CCWGG 2 cut(s) 548, 900
AluBI AGCT 9 cut(s) 15, 35, 40, 328, 623, 644, 842, 878, 947
AluI AGCT 9 cut(s) 15, 35, 40, 328, 623, 644, 842, 878, 947
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 285, 309, 737
AlwI GGATC 2 cut(s) 266, 839
Ama87I CYCGRG 1 cut(s) 539
Aor13HI TCCGGA 1 cut(s) 467
AoxI GGCC 3 cut(s) 138, 366, 1077
ApeKI GCWGC 3 cut(s) 32, 325, 878
ApoI RAATTY 3 cut(s) 413, 494, 602
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 2 cut(s) 540, 541
AsuHPI GGTGA 2 cut(s) 38, 278
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 3 cut(s) 507, 540, 548
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 2 cut(s) 535, 543
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 2 cut(s) 665, 835
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 44, 337, 865
BccI CCATC 2 cut(s) 625, 1029
BceAI ACGGC 1 cut(s) 800
BciT130I CCWGG 2 cut(s) 550, 902
BciVI GTATCC 1 cut(s) 204
BcnI CCSGG 2 cut(s) 540, 541
BcoDI GTCTC 3 cut(s) 285, 309, 737
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 4 cut(s) 155, 509, 638, 875
BfmI CTRYAG 3 cut(s) 109, 672, 948
BfoI RGCGCY 1 cut(s) 799
BfuAI ACCTGC 1 cut(s) 568
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 4 cut(s) 33, 326, 879, 1007
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 4 cut(s) 34, 327, 880, 1008
BmcAI AGTACT 1 cut(s) 1106
Bme1390I CCNGG 4 cut(s) 540, 541, 550, 902
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 537, 545
BmrFI CCNGG 4 cut(s) 540, 541, 550, 902
BmsI GCATC 3 cut(s) 175, 444, 1052
BpiI GAAGAC 2 cut(s) 665, 835
BplI GAGNNNNNCTC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 906
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 2 cut(s) 540, 541
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 135, 539, 548, 982
BsaWI WCCGGW 2 cut(s) 208, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 1036
Bse1I ACTGG 1 cut(s) 833
BseAI TCCGGA 1 cut(s) 467
BseBI CCWGG 2 cut(s) 550, 902
BseDI CCNNGG 4 cut(s) 135, 539, 548, 982
BseGI GGATG 2 cut(s) 178, 714
BseLI CCNNNNNNNGG 1 cut(s) 1036
BseMII CTCAG 3 cut(s) 50, 341, 938
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 4 cut(s) 9, 12, 500, 615
BseSI GKGCMC 3 cut(s) 507, 540, 548
BseXI GCAGC 3 cut(s) 44, 337, 865
BseYI CCCAGC 1 cut(s) 966
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 3 cut(s) 140, 368, 1079
BshNI GGYRCC 2 cut(s) 535, 543
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 3 cut(s) 209, 468, 540
BslFI GGGAC 1 cut(s) 1082
BslI CCNNNNNNNGG 1 cut(s) 1036
BsmAI GTCTC 3 cut(s) 285, 309, 737
BsmFI GGGAC 1 cut(s) 1082
BsnI GGCC 3 cut(s) 140, 368, 1079
Bso31I GGTCTC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 539
Bsp1286I GDGCHC 4 cut(s) 17, 507, 540, 548
Bsp13I TCCGGA 1 cut(s) 467
Bsp143I GATC 6 cut(s) 124, 271, 355, 844, 849, 1092
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 5 cut(s) 114, 188, 406, 941, 1007
BspANI GGCC 3 cut(s) 140, 368, 1079
BspCNI CTCAG 3 cut(s) 49, 342, 937
BspEI TCCGGA 1 cut(s) 467
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 537, 545
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 2 cut(s) 266, 839
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 2 cut(s) 535, 543
BspTNI GGTCTC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 833
BssECI CCNNGG 4 cut(s) 135, 539, 548, 982
BssMI GATC 6 cut(s) 124, 271, 355, 844, 849, 1092
BssT1I CCWWGG 2 cut(s) 135, 982
Bst2UI CCWGG 2 cut(s) 550, 902
Bst4CI ACNGT 2 cut(s) 152, 293
Bst6I CTCTTC 3 cut(s) 60, 72, 735
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 5 cut(s) 36, 75, 87, 350, 924
BstF5I GGATG 2 cut(s) 178, 714
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 799
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 6 cut(s) 127, 274, 358, 847, 852, 1095
BstMAI GTCTC 3 cut(s) 285, 309, 737
BstMBI GATC 6 cut(s) 124, 271, 355, 844, 849, 1092
BstMWI GCNNNNNNNGC 2 cut(s) 331, 1085
BstNI CCWGG 2 cut(s) 550, 902
BstSCI CCNGG 4 cut(s) 538, 539, 548, 900
BstSFI CTRYAG 3 cut(s) 109, 672, 948
BstSLI GKGCMC 3 cut(s) 507, 540, 548
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 3 cut(s) 44, 337, 865
BstV2I GAAGAC 2 cut(s) 665, 835
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 3 cut(s) 140, 368, 1079
BtgZI GCGATG 1 cut(s) 1029
BtsCI GGATG 2 cut(s) 178, 714
BtsI GCAGTG 2 cut(s) 507, 1001
BtsIMutI CAGTG 3 cut(s) 507, 840, 1001
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 945
CfoI GCGC 1 cut(s) 798
Cfr13I GGNCC 1 cut(s) 224
Cfr9I CCCGGG 1 cut(s) 539
Csp6I GTAC 1 cut(s) 1105
CviAII CATG 6 cut(s) 263, 286, 331, 364, 696, 715
CviQI GTAC 1 cut(s) 1105
DdeI CTNAG 5 cut(s) 36, 75, 87, 350, 924
DpnI GATC 6 cut(s) 126, 273, 357, 846, 851, 1094
DpnII GATC 6 cut(s) 124, 271, 355, 844, 849, 1092
DraI TTTAAA 1 cut(s) 633
EaeI YGGCCR 2 cut(s) 138, 1077
Eam1104I CTCTTC 3 cut(s) 60, 72, 735
EarI CTCTTC 3 cut(s) 60, 72, 735
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 135, 982
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 548, 900
EcoT14I CCWWGG 2 cut(s) 135, 982
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 2 cut(s) 135, 982
FaeI CATG 6 cut(s) 266, 289, 334, 367, 699, 718
FalI AAGNNNNNCTT 4 cut(s) 557, 589, 732, 764
FaqI GGGAC 1 cut(s) 1082
FatI CATG 6 cut(s) 262, 285, 330, 363, 695, 714
Fnu4HI GCNGC 4 cut(s) 33, 326, 879, 1007
FokI GGATG 2 cut(s) 185, 721
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 33, 326, 879, 1007
FspBI CTAG 4 cut(s) 155, 509, 638, 875
GlaI GCGC 1 cut(s) 797
GluI GCNGC 4 cut(s) 33, 326, 879, 1007
GsaI CCCAGC 1 cut(s) 970
GsuI CTGGAG 1 cut(s) 906
HaeII RGCGCY 1 cut(s) 799
HaeIII GGCC 3 cut(s) 140, 368, 1079
HapII CCGG 3 cut(s) 209, 468, 540
HhaI GCGC 1 cut(s) 798
Hin1II CATG 6 cut(s) 266, 289, 334, 367, 699, 718
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HincII GTYRAC 1 cut(s) 702
HindII GTYRAC 1 cut(s) 702
HinfI GANTC 1 cut(s) 745
HpaII CCGG 3 cut(s) 209, 468, 540
HphI GGTGA 2 cut(s) 38, 278
Hpy166II GTNNAC 2 cut(s) 132, 702
Hpy188I TCNGA 6 cut(s) 10, 27, 198, 224, 276, 849
Hpy8I GTNNAC 2 cut(s) 132, 702
HpyAV CCTTC 1 cut(s) 786
HpyCH4III ACNGT 2 cut(s) 152, 293
HpyCH4IV ACGT 1 cut(s) 869
HpyCH4V TGCA 9 cut(s) 32, 206, 262, 457, 500, 577, 714, 858, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 1085
HpyF3I CTNAG 5 cut(s) 36, 75, 87, 350, 924
HpySE526I ACGT 1 cut(s) 869
Hsp92II CATG 6 cut(s) 266, 289, 334, 367, 699, 718
HspAI GCGC 1 cut(s) 796
Kpn2I TCCGGA 1 cut(s) 467
Kzo9I GATC 6 cut(s) 124, 271, 355, 844, 849, 1092
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 628
Lsp1109I GCAGC 3 cut(s) 44, 337, 865
LweI GCATC 3 cut(s) 175, 444, 1052
MaeI CTAG 4 cut(s) 155, 509, 638, 875
MaeII ACGT 1 cut(s) 869
MalI GATC 6 cut(s) 126, 273, 357, 846, 851, 1094
MboI GATC 6 cut(s) 124, 271, 355, 844, 849, 1092
MboII GAAGA 9 cut(s) 47, 59, 242, 281, 577, 670, 752, 840, 1087
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 4 cut(s) 17, 507, 540, 548
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 8 cut(s) 413, 420, 429, 447, 494, 602, 780, 915
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 1 cut(s) 367
Mox20I TGGCCA 1 cut(s) 140
MroI TCCGGA 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 240
MscI TGGCCA 1 cut(s) 140
MseI TTAA 3 cut(s) 632, 779, 911
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 114, 1009
MspI CCGG 3 cut(s) 209, 468, 540
MspR9I CCNGG 4 cut(s) 540, 541, 550, 902
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 2 cut(s) 550, 902
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 331, 1085
NciI CCSGG 2 cut(s) 540, 541
NdeII GATC 6 cut(s) 124, 271, 355, 844, 849, 1092
NlaIII CATG 6 cut(s) 266, 289, 334, 367, 699, 718
NlaIV GGNNCC 2 cut(s) 537, 545
PciSI GCTCTTC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 240
PkrI GCNGC 4 cut(s) 34, 327, 880, 1008
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
Psp124BI GAGCTC 1 cut(s) 17
Psp1406I AACGTT 1 cut(s) 869
Psp6I CCWGG 2 cut(s) 548, 900
PspFI CCCAGC 1 cut(s) 966
PspGI CCWGG 2 cut(s) 548, 900
PspN4I GGNNCC 2 cut(s) 537, 545
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 1 cut(s) 1106
RsaNI GTAC 1 cut(s) 1105
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 3 cut(s) 632, 779, 911
SatI GCNGC 4 cut(s) 33, 326, 879, 1007
Sau3AI GATC 6 cut(s) 124, 271, 355, 844, 849, 1092
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 1106
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 4 cut(s) 540, 541, 550, 902
SduI GDGCHC 4 cut(s) 17, 507, 540, 548
SfaNI GCATC 3 cut(s) 175, 444, 1052
SfcI CTRYAG 3 cut(s) 109, 672, 948
SinI GGWCC 1 cut(s) 224
SmaI CCCGGG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
SpeI ACTAGT 1 cut(s) 637
Sse9I AATT 8 cut(s) 413, 420, 429, 447, 494, 602, 780, 915
SsiI CCGC 5 cut(s) 114, 188, 406, 941, 1007
SspMI CTAG 4 cut(s) 155, 509, 638, 875
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 538, 539, 548, 900
StyI CCWWGG 2 cut(s) 135, 982
TaaI ACNGT 2 cut(s) 152, 293
TaiI ACGT 1 cut(s) 872
TasI AATT 8 cut(s) 413, 420, 429, 447, 494, 602, 780, 915
TatI WGTACW 1 cut(s) 1104
TauI GCSGC 1 cut(s) 1009
Tru1I TTAA 3 cut(s) 632, 779, 911
Tru9I TTAA 3 cut(s) 632, 779, 911
TscAI CASTG 3 cut(s) 507, 840, 1008
TseI GCWGC 3 cut(s) 32, 325, 878
TspDTI ATGAA 5 cut(s) 249, 302, 392, 896, 1098
TspMI CCCGGG 1 cut(s) 539
TspRI CASTG 3 cut(s) 507, 840, 1008
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 3 cut(s) 413, 494, 602
XbaI TCTAGA 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmaI CCCGGG 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 4 cut(s) 155, 509, 638, 875
ZrmI AGTACT 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.