RchiOBHm_Chr2g0117671

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000159
Physical Location & Seq
Reverse (-)
29905498 .. 29908957
3460 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49057

Sequence Viewer

Length: 801 bp
ATGGAGTTTGCCAGCAGCATTGCAGATAACGTCTTGGTTAGGATAGCTTCACATGCTTCCCAAGAGATCTCCTTGGCATGGAGTGCCCAACTTGAGCTCACCAAGCTCAACAACACCTTATCTGCCATCAAACCAGTGCTCGAGGATGCAGAGAAGAAGCAAGTGAGAAATCCCCTAATCACTCGTTGGTTAGGAAATCTCAAAGATGTTTGTCATGACGTTGATGATGTCTTAGACGAACTGGACTTCCAAAAGTTGCGGTTGAAAGTGGAGGTCGACAATTGTGGAAAGATCAAAGCAAAGCTACTGTGTAATAATTTGGAATCCTTGCCACCAAATATGAAACACATGACTGCTTTACATACTTTGGTTATCGATGATTGCGAGAAGCTTCAGGTGATGAGATCAGGGGAAGGTCCTCAAGGTCTTCGATCATTGGCTATCCAGAATTCAAGTTTGGAGGCTTTGCCCCCTTGGCTCATTGAAGATTCTGCAGACGCTCTACAAAGCATAGCACTTGTTAAATGTCATAATCTCACGGCACTTCCGGAGTTGATAAACTTCACATTCCTCGAGCAACTACGCATTGAAGAATGCTCCAAATTGTCAGCTTTGCCGCAAGAGTTGCATTGCCTTACTGAGTTGAGAGGATTGACGATTTCAGAGTGTCTTGAATTGAGCAAAAGCTGCAAAAGGCAATTAAAAGGTGAGGAGTGGTCAAAGATGGCACGTCAGGTGAAGATTACACTCGACGCTGATGATGAAGAAGACGAAGATGAAGGGACACCAACGATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

266

Amino Acids

29.79

Weight (kDa)

4.85

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 93 4.6e-19 Rx N-terminal domain
LRR_R13L1-DRL21 PF25019 133 - 199 1.3e-08 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 2 cut(s) 259, 617
AcsI RAATTY 1 cut(s) 448
AcuI CTGAAG 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 5 cut(s) 265, 453, 485, 590, 674
AjiI CACGTC 1 cut(s) 731
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 7 cut(s) 47, 97, 106, 304, 391, 611, 687
AluI AGCT 7 cut(s) 47, 97, 106, 304, 391, 611, 687
Alw21I GWGCWC 2 cut(s) 99, 141
Ama87I CYCGRG 2 cut(s) 140, 572
Aor13HI TCCGGA 1 cut(s) 547
ApeKI GCWGC 2 cut(s) 15, 687
ApoI RAATTY 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 4 cut(s) 91, 409, 719, 748
AvaI CYCGRG 2 cut(s) 140, 572
AvaII GGWCC 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 419, 774
Bbv12I GWGCWC 2 cut(s) 99, 141
BbvI GCAGC 2 cut(s) 27, 674
BccI CCATC 2 cut(s) 134, 718
BceAI ACGGC 1 cut(s) 555
BfmI CTRYAG 1 cut(s) 492
BglI GCCNNNNNGGC 1 cut(s) 475
BglII AGATCT 1 cut(s) 66
BisI GCNGC 3 cut(s) 16, 617, 688
BlsI GCNGC 3 cut(s) 17, 618, 689
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 2 cut(s) 140, 572
BmgBI CACGTC 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 416
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 2 cut(s) 419, 774
BpuEI CTTGAG 2 cut(s) 113, 405
Bsa29I ATCGAT 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 72, 473
BsaWI WCCGGW 1 cut(s) 547
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 2 cut(s) 134, 246
Bse3DI GCAATG 2 cut(s) 18, 628
BseAI TCCGGA 1 cut(s) 547
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 72, 473
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 2 cut(s) 18, 628
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 2 cut(s) 134, 246
BseRI GAGGAG 1 cut(s) 725
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 2 cut(s) 27, 674
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 2 cut(s) 99, 141
BsiHKCI CYCGRG 2 cut(s) 140, 572
BsiSI CCGG 1 cut(s) 548
BslFI GGGAC 1 cut(s) 796
BslI CCNNNNNNNGG 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 796
BsmI GAATGC 1 cut(s) 599
BsoBI CYCGRG 2 cut(s) 140, 572
Bsp1286I GDGCHC 3 cut(s) 88, 99, 141
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 4 cut(s) 66, 291, 404, 431
BspACI CCGC 2 cut(s) 259, 617
BspCNI CTCAG 1 cut(s) 631
BspDI ATCGAT 1 cut(s) 375
BspEI TCCGGA 1 cut(s) 547
BspHI TCATGA 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 496
BsrDI GCAATG 2 cut(s) 18, 628
BsrI ACTGG 2 cut(s) 134, 246
BssECI CCNNGG 2 cut(s) 72, 473
BssMI GATC 4 cut(s) 66, 291, 404, 431
BssT1I CCWWGG 2 cut(s) 72, 473
Bst4CI ACNGT 1 cut(s) 309
BstAPI GCANNNNNTGC 3 cut(s) 83, 625, 687
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 232, 639
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 4 cut(s) 69, 294, 407, 434
BstMBI GATC 4 cut(s) 66, 291, 404, 431
BstMWI GCNNNNNNNGC 6 cut(s) 53, 83, 103, 475, 625, 687
BstNSI RCATGY 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 27, 674
BstV2I GAAGAC 2 cut(s) 419, 774
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 375
BsuTUI ATCGAT 1 cut(s) 375
BtrI CACGTC 1 cut(s) 731
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 13
CciI TCATGA 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 416
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 2 cut(s) 506, 761
CviAII CATG 4 cut(s) 53, 78, 215, 349
DdeI CTNAG 2 cut(s) 232, 639
DpnI GATC 4 cut(s) 68, 293, 406, 433
DpnII GATC 4 cut(s) 66, 291, 404, 431
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 72, 473
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 416
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 377
Eco88I CYCGRG 2 cut(s) 140, 572
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 72, 473
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 72, 473
FaeI CATG 4 cut(s) 56, 81, 218, 352
FaiI YATR 8 cut(s) 54, 79, 216, 341, 350, 363, 512, 531
FaqI GGGAC 1 cut(s) 796
FatI CATG 4 cut(s) 52, 77, 214, 348
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 16, 617, 688
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 16, 617, 688
GluI GCNGC 3 cut(s) 16, 617, 688
HapII CCGG 1 cut(s) 548
HgaI GACGC 2 cut(s) 506, 761
Hin1II CATG 4 cut(s) 56, 81, 218, 352
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 2 cut(s) 323, 488
HpaII CCGG 1 cut(s) 548
HphI GGTGA 4 cut(s) 91, 409, 719, 748
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 1 cut(s) 664
Hpy188III TCNNGA 4 cut(s) 215, 445, 548, 671
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 755
HpyAV CCTTC 2 cut(s) 407, 773
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 3 cut(s) 30, 219, 730
HpyCH4V TGCA 5 cut(s) 23, 149, 494, 628, 690
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 83, 103, 475, 625, 687
HpyF3I CTNAG 2 cut(s) 232, 639
HpySE526I ACGT 3 cut(s) 30, 219, 730
Hsp92II CATG 4 cut(s) 56, 81, 218, 352
Kpn2I TCCGGA 1 cut(s) 547
Kzo9I GATC 4 cut(s) 66, 291, 404, 431
LmnI GCTCC 1 cut(s) 602
LpnPI CCDG 8 cut(s) 25, 147, 227, 380, 393, 458, 561, 719
Lsp1109I GCAGC 2 cut(s) 27, 674
LweI GCATC 1 cut(s) 136
MaeII ACGT 3 cut(s) 30, 219, 730
MalI GATC 4 cut(s) 68, 293, 406, 433
MboI GATC 4 cut(s) 66, 291, 404, 431
MboII GAAGA 8 cut(s) 166, 419, 497, 602, 751, 776, 779, 785
MfeI CAATTG 1 cut(s) 280
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 3 cut(s) 88, 99, 141
MluCI AATT 6 cut(s) 280, 316, 448, 602, 674, 698
MnlI CCTC 7 cut(s) 136, 265, 429, 454, 581, 641, 703
MroI TCCGGA 1 cut(s) 547
MseI TTAA 2 cut(s) 522, 701
MspI CCGG 1 cut(s) 548
MunI CAATTG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 599
MwoI GCNNNNNNNGC 6 cut(s) 53, 83, 103, 475, 625, 687
NdeII GATC 4 cut(s) 66, 291, 404, 431
NlaIII CATG 4 cut(s) 56, 81, 218, 352
NspI RCATGY 1 cut(s) 56
PaeR7I CTCGAG 2 cut(s) 140, 572
PagI TCATGA 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 2 cut(s) 323, 488
PkrI GCNGC 3 cut(s) 17, 618, 689
PpuMI RGGWCCY 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 416
PspPI GGNCC 1 cut(s) 416
PspPPI RGGWCCY 1 cut(s) 416
PspXI VCTCGAGB 2 cut(s) 140, 572
PstI CTGCAG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 66
SacI GAGCTC 1 cut(s) 99
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 522, 701
SatI GCNGC 3 cut(s) 16, 617, 688
Sau3AI GATC 4 cut(s) 66, 291, 404, 431
Sau96I GGNCC 1 cut(s) 416
SduI GDGCHC 3 cut(s) 88, 99, 141
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 492
Sfr274I CTCGAG 2 cut(s) 140, 572
SinI GGWCC 1 cut(s) 416
SlaI CTCGAG 2 cut(s) 140, 572
SmlI CTYRAG 4 cut(s) 92, 140, 420, 572
SmoI CTYRAG 4 cut(s) 92, 140, 420, 572
Sse9I AATT 6 cut(s) 280, 316, 448, 602, 674, 698
SsiI CCGC 2 cut(s) 259, 617
SstI GAGCTC 1 cut(s) 99
StyI CCWWGG 2 cut(s) 72, 473
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 3 cut(s) 33, 222, 733
TaqI TCGA 6 cut(s) 141, 276, 375, 430, 573, 750
TasI AATT 6 cut(s) 280, 316, 448, 602, 674, 698
TauI GCSGC 1 cut(s) 619
TfiI GAWTC 2 cut(s) 323, 488
Tru1I TTAA 2 cut(s) 522, 701
Tru9I TTAA 2 cut(s) 522, 701
TscAI CASTG 1 cut(s) 141
TseI GCWGC 2 cut(s) 15, 687
TspDTI ATGAA 3 cut(s) 356, 777, 792
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 448
XceI RCATGY 1 cut(s) 56
XhoI CTCGAG 2 cut(s) 140, 572
XmiI GTMKAC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.