Rorug02G0205600

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000159
Physical Location & Seq
Reverse (-)
19277583 .. 19280885
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0205600.1

Sequence Viewer

Length: 1647 bp
ATGGAGAAGAAGAGGAAGAAGGATGAGAAAGTTGCTTGCACCACTAGTCAAGAACCAGAGACAGACCACCATATCTTGAGCAAGGATCACCAAAGCCGCCAAGACGATGCTGAACCTCTAACAAAGAGTACAAACACTGATAGTCCTTCGAATGGCAATGTACCTTCCCTATGTCACCAATACCCAGTAACTTTTCCATGGCCGTACACGCCTCAACATGGTGGGGAGCAATGTCCTTTGGTGTCTAGACCCTTTGTTGCAACTCAATCACCGCTGCCTGGCATTATAAGCCAATGGCCGCAGTTTCCACATCAGGTCCAGCATGGCCAGCCACCACAGAACTATTCCCAGTCAGCTGCTCCCTTTTGGCTACCACAGCAGCCTGGTTATCCATTTTCTGCCTCCAATGCACCGCCAACTTGCCAGCCATTTGTTGCTGTTGGAGCAACTGATATTAGTGGTGGAACTTCAACAACAAACCAAACTCAGGTTCCCAATTTCTATTACCATGTTGGGTACCCATATCCAGGCTTTCCAGGTTCATGTGATTCCTTATCTTGGTGGAATCAAGCACAAGCACCACAACCTCTGTGCACATATGCTTTTCCAGGAGGCTGCATCTCTTCACCACCTGCATCGCTGCCTAGTTGTTCTGCAACTCTTGGGCAAACCTTTGAAAAAGGAATTATCAGGCCACCAGCAAAACTTTCTAAGAAGCACCAGCAGCTTTGGGATGTTCAATCTGCAGAAAATGTTCAGCTATGGAGTGCAATCAACCACTTGCAATCAGAAGTAACTGATTACAAAAATTGCTTAACAAGGCTCGAAGCAGAACTGTCTTCTCTTAAAGCAGGAGCAGAAGAGACCACTGCTCAAGTTAGTGGGGCTGTTTTATCTGCAAAACCATCAAAGAGAGGGAGACCAAAGAGATCAGTTGCTTCAGCTGATGCAGTGCATTCTCCTGATAAGTCTCATCGCCGAGCTCGTGGCAGAAAATCTGTAGTATGCAATGCTCAACAGTTTGATAGTAAATCACATTTGTTTGAGAAAGTAATCCTCAACAAGGTGGAAGACAAAGAAAAATCATGTCACTTAACAGCCGCTGTTGAGCAAGGAAACAATGCCTCACATGTTGTCACACATTCTGGTGGCAATATGGAGATAAATGGAACCAGTTCGACAATGCCTGCATTCCACTATCAATTTCAGCACGAACTTCCTGCTGTCCAAACATGTGGAAATGGGAGTTCTGCTTCTTTGGAAATGAAAGGTACTGATGTCAAGGCTAACAACTGTAGGACTACCTACCCTATCTATCCTCAGAACATCCCATGGCCTTATAACAATACCTCTGAAATGGAGAGAAACGAGCTAAATATTGGCCCCAATGGTTTGTACAATAGCGGTATTGTTATCACACAAGGGGGACAGATCATCCCTGGATGGAGTTTTGGAAATGAAGAGGATGCTTCAGAAAAGCAGGAAGATGCCATGTTAGGATCAGGAAAGAATGACAATGAGGAGACCATGGGAGATGAATCCAGTTCAGGAGCAGAAAAAGTTGCTCGAACAAACAATGAGGGTGGCTTCAAAATGGATGATAGAGAAGGAACTAGCAATAAGTGTCTTGCTCCACCCAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

548

Amino Acids

59.68

Weight (kDa)

6.14

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 287, 1341
AarI CACCTGC 1 cut(s) 640
Acc36I ACCTGC 1 cut(s) 640
Acc65I GGTACC 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 516
AciI CCGC 6 cut(s) 97, 272, 299, 413, 1101, 1404
AclWI GGATC 2 cut(s) 93, 1507
AcoI YGGCCR 3 cut(s) 200, 296, 325
AcuI CTGAAG 2 cut(s) 924, 1455
AfaI GTAC 6 cut(s) 130, 162, 206, 518, 1273, 1397
AfiI CCNNNNNNNGG 7 cut(s) 152, 218, 278, 487, 527, 558, 1063
AflIII ACRYGT 2 cut(s) 1129, 1232
AgsI TTSAA 4 cut(s) 471, 677, 740, 1591
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 6 cut(s) 277, 382, 526, 535, 607, 1438
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AluBI AGCT 6 cut(s) 356, 727, 760, 944, 983, 1372
AluI AGCT 6 cut(s) 356, 727, 760, 944, 983, 1372
Alw21I GWGCWC 2 cut(s) 596, 985
Alw26I GTCTC 5 cut(s) 53, 857, 913, 975, 1517
Alw44I GTGCAC 1 cut(s) 592
AlwI GGATC 2 cut(s) 93, 1507
AlwNI CAGNNNCTG 1 cut(s) 1103
AoxI GGCC 6 cut(s) 200, 296, 325, 692, 1334, 1381
ApaLI GTGCAC 1 cut(s) 592
ApeKI GCWGC 6 cut(s) 274, 356, 379, 615, 640, 724
Asp700I GAANNNNTTC 2 cut(s) 753, 1174
Asp718I GGTACC 1 cut(s) 516
AspS9I GGNCC 2 cut(s) 316, 1382
AsuHPI GGTGA 4 cut(s) 80, 167, 261, 618
AsuII TTCGAA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 596
BaeI ACNNNNGTAYC 2 cut(s) 1263, 1296
BalI TGGCCA 1 cut(s) 327
BanI GGYRCC 1 cut(s) 516
BanII GRGCYC 1 cut(s) 985
BauI CACGAG 1 cut(s) 984
BbsI GAAGAC 2 cut(s) 831, 1077
Bbv12I GWGCWC 2 cut(s) 596, 985
BbvI GCAGC 6 cut(s) 261, 343, 391, 602, 627, 736
BccI CCATC 2 cut(s) 913, 1437
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 1202, 1236
BciT130I CCWGG 6 cut(s) 279, 384, 528, 537, 609, 1440
BcoDI GTCTC 5 cut(s) 53, 857, 913, 975, 1517
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 5 cut(s) 45, 246, 645, 1614, 1645
BfmI CTRYAG 3 cut(s) 744, 999, 1294
BfuAI ACCTGC 1 cut(s) 640
BisI GCNGC 9 cut(s) 97, 275, 299, 357, 380, 616, 641, 725, 1101
BlsI GCNGC 9 cut(s) 98, 276, 300, 358, 381, 617, 642, 726, 1102
Bme1390I CCNGG 6 cut(s) 279, 384, 528, 537, 609, 1440
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 316, 1382
BmiI GGNNCC 4 cut(s) 492, 518, 1171, 1384
BmrFI CCNGG 6 cut(s) 279, 384, 528, 537, 609, 1440
BmrI ACTGGG 2 cut(s) 179, 343
BmsI GCATC 6 cut(s) 97, 627, 644, 937, 1456, 1477
BmuI ACTGGG 2 cut(s) 179, 343
BpiI GAAGAC 2 cut(s) 831, 1077
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 97, 858
BsaI GGTCTC 3 cut(s) 857, 913, 1517
BsaJI CCNNGG 4 cut(s) 197, 1331, 1438, 1527
Bsc4I CCNNNNNNNGG 7 cut(s) 152, 218, 278, 487, 527, 558, 1063
Bse1I ACTGG 4 cut(s) 185, 349, 1173, 1542
Bse3DI GCAATG 3 cut(s) 163, 236, 1015
BseBI CCWGG 6 cut(s) 279, 384, 528, 537, 609, 1440
BseDI CCNNGG 4 cut(s) 197, 1331, 1438, 1527
BseGI GGATG 7 cut(s) 28, 739, 1326, 1434, 1448, 1471, 1603
BseLI CCNNNNNNNGG 7 cut(s) 152, 218, 278, 487, 527, 558, 1063
BseMI GCAATG 3 cut(s) 163, 236, 1015
BseMII CTCAG 2 cut(s) 500, 1334
BseNI ACTGG 4 cut(s) 185, 349, 1173, 1542
BseRI GAGGAG 1 cut(s) 1535
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 6 cut(s) 261, 343, 391, 602, 627, 736
BshFI GGCC 6 cut(s) 202, 298, 327, 694, 1336, 1383
BshNI GGYRCC 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 596, 985
BslFI GGGAC 1 cut(s) 1440
BslI CCNNNNNNNGG 7 cut(s) 152, 218, 278, 487, 527, 558, 1063
BsmAI GTCTC 5 cut(s) 53, 857, 913, 975, 1517
BsmFI GGGAC 1 cut(s) 1440
BsmI GAATGC 2 cut(s) 955, 1190
BsnI GGCC 6 cut(s) 202, 298, 327, 694, 1336, 1383
Bso31I GGTCTC 3 cut(s) 857, 913, 1517
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 596, 985
Bsp1407I TGTACA 1 cut(s) 1395
Bsp143I GATC 4 cut(s) 85, 929, 1431, 1499
Bsp19I CCATGG 3 cut(s) 197, 1331, 1527
BspACI CCGC 6 cut(s) 97, 272, 299, 413, 1101, 1404
BspANI GGCC 6 cut(s) 202, 298, 327, 694, 1336, 1383
BspCNI CTCAG 2 cut(s) 499, 1333
BspLI GGNNCC 4 cut(s) 492, 518, 1171, 1384
BspMAI CTGCAG 1 cut(s) 748
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 2 cut(s) 93, 1507
BspT104I TTCGAA 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 516
BspTNI GGTCTC 3 cut(s) 857, 913, 1517
BsrDI GCAATG 3 cut(s) 163, 236, 1015
BsrGI TGTACA 1 cut(s) 1395
BsrI ACTGG 4 cut(s) 185, 349, 1173, 1542
BssECI CCNNGG 4 cut(s) 197, 1331, 1438, 1527
BssMI GATC 4 cut(s) 85, 929, 1431, 1499
BssSI CACGAG 1 cut(s) 984
BssT1I CCWWGG 3 cut(s) 197, 1331, 1527
Bst2BI CACGAG 1 cut(s) 984
Bst2UI CCWGG 6 cut(s) 279, 384, 528, 537, 609, 1440
Bst4CI ACNGT 3 cut(s) 837, 1020, 1295
Bst6I CTCTTC 4 cut(s) 5, 628, 855, 1455
BstAUI TGTACA 1 cut(s) 1395
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 4 cut(s) 37, 329, 425, 1188
BstDEI CTNAG 3 cut(s) 486, 711, 1320
BstDSI CCRYGG 3 cut(s) 197, 1331, 1527
BstENI CCTNNNNNAGG 1 cut(s) 1061
BstF5I GGATG 7 cut(s) 28, 739, 1326, 1434, 1448, 1471, 1603
BstKTI GATC 4 cut(s) 88, 932, 1434, 1502
BstMAI GTCTC 5 cut(s) 53, 857, 913, 975, 1517
BstMBI GATC 4 cut(s) 85, 929, 1431, 1499
BstMWI GCNNNNNNNGC 7 cut(s) 208, 288, 328, 376, 407, 443, 724
BstNI CCWGG 6 cut(s) 279, 384, 528, 537, 609, 1440
BstNSI RCATGY 2 cut(s) 1133, 1236
BstSCI CCNGG 6 cut(s) 277, 382, 526, 535, 607, 1438
BstSFI CTRYAG 3 cut(s) 744, 999, 1294
BstSLI GKGCMC 1 cut(s) 596
BstV1I GCAGC 6 cut(s) 261, 343, 391, 602, 627, 736
BstV2I GAAGAC 2 cut(s) 831, 1077
BstXI CCANNNNNNTGG 1 cut(s) 1235
BsuRI GGCC 6 cut(s) 202, 298, 327, 694, 1336, 1383
BtgI CCRYGG 3 cut(s) 197, 1331, 1527
BtgZI GCGATG 2 cut(s) 621, 959
BtsCI GGATG 7 cut(s) 28, 739, 1326, 1434, 1448, 1471, 1603
BtsI GCAGTG 2 cut(s) 867, 957
BtsIMutI CAGTG 3 cut(s) 135, 867, 957
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 4 cut(s) 37, 329, 425, 1188
CaiI CAGNNNCTG 1 cut(s) 1103
Cfr13I GGNCC 2 cut(s) 316, 1382
Csp6I GTAC 6 cut(s) 129, 161, 205, 517, 1272, 1396
CspCI CAANNNNNGTGG 2 cut(s) 1564, 1599
CviQI GTAC 6 cut(s) 129, 161, 205, 517, 1272, 1396
DdeI CTNAG 3 cut(s) 486, 711, 1320
DpnI GATC 4 cut(s) 87, 931, 1433, 1501
DpnII GATC 4 cut(s) 85, 929, 1431, 1499
EaeI YGGCCR 3 cut(s) 200, 296, 325
Eam1104I CTCTTC 4 cut(s) 5, 628, 855, 1455
EarI CTCTTC 4 cut(s) 5, 628, 855, 1455
Ecl136II GAGCTC 1 cut(s) 983
Eco130I CCWWGG 3 cut(s) 197, 1331, 1527
Eco24I GRGCYC 1 cut(s) 985
Eco31I GGTCTC 3 cut(s) 857, 913, 1517
Eco47I GGWCC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 983
Eco57I CTGAAG 2 cut(s) 924, 1455
EcoICRI GAGCTC 1 cut(s) 983
EcoNI CCTNNNNNAGG 1 cut(s) 1061
EcoRII CCWGG 6 cut(s) 277, 382, 526, 535, 607, 1438
EcoT14I CCWWGG 3 cut(s) 197, 1331, 1527
EcoT38I GRGCYC 1 cut(s) 985
ErhI CCWWGG 3 cut(s) 197, 1331, 1527
FaqI GGGAC 1 cut(s) 1440
FauNDI CATATG 1 cut(s) 598
Fnu4HI GCNGC 9 cut(s) 97, 275, 299, 357, 380, 616, 641, 725, 1101
FokI GGATG 7 cut(s) 35, 746, 1313, 1421, 1455, 1478, 1610
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 9 cut(s) 97, 275, 299, 357, 380, 616, 641, 725, 1101
FspBI CTAG 5 cut(s) 45, 246, 645, 1614, 1645
GluI GCNGC 9 cut(s) 97, 275, 299, 357, 380, 616, 641, 725, 1101
HaeIII GGCC 6 cut(s) 202, 298, 327, 694, 1336, 1383
HinfI GANTC 3 cut(s) 548, 565, 1538
HphI GGTGA 4 cut(s) 80, 167, 261, 618
Hpy166II GTNNAC 2 cut(s) 207, 594
Hpy188I TCNGA 4 cut(s) 790, 1323, 1354, 1474
Hpy188III TCNNGA 6 cut(s) 50, 76, 246, 962, 1503, 1548
Hpy8I GTNNAC 2 cut(s) 207, 594
HpyAV CCTTC 4 cut(s) 13, 156, 174, 1601
HpyCH4III ACNGT 3 cut(s) 837, 1020, 1295
HpyF10VI GCNNNNNNNGC 7 cut(s) 208, 288, 328, 376, 407, 443, 724
HpyF3I CTNAG 3 cut(s) 486, 711, 1320
KpnI GGTACC 1 cut(s) 520
Kzo9I GATC 4 cut(s) 85, 929, 1431, 1499
LmnI GCTCC 6 cut(s) 226, 364, 443, 854, 1550, 1636
Lsp1109I GCAGC 6 cut(s) 261, 343, 391, 602, 627, 736
LweI GCATC 6 cut(s) 97, 627, 644, 937, 1456, 1477
MaeI CTAG 5 cut(s) 45, 246, 645, 1614, 1645
MaeIII GTNAC 5 cut(s) 173, 187, 793, 1088, 1135
MalI GATC 4 cut(s) 87, 931, 1433, 1501
MboI GATC 4 cut(s) 85, 929, 1431, 1499
MboII GAAGA 9 cut(s) 19, 22, 28, 615, 831, 872, 1082, 1472, 1496
MhlI GDGCHC 2 cut(s) 596, 985
MlsI TGGCCA 1 cut(s) 327
MluCI AATT 4 cut(s) 496, 684, 808, 1202
MluNI TGGCCA 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 421
Mox20I TGGCCA 1 cut(s) 327
MroXI GAANNNNTTC 2 cut(s) 753, 1174
MscI TGGCCA 1 cut(s) 327
MseI TTAA 3 cut(s) 815, 846, 1094
MslI CAYNNNNRTG 1 cut(s) 1146
Msp20I TGGCCA 1 cut(s) 327
MspA1I CMGCKG 4 cut(s) 274, 356, 944, 1103
MspR9I CCNGG 6 cut(s) 279, 384, 528, 537, 609, 1440
Mva1269I GAATGC 2 cut(s) 955, 1190
MvaI CCWGG 6 cut(s) 279, 384, 528, 537, 609, 1440
MwoI GCNNNNNNNGC 7 cut(s) 208, 288, 328, 376, 407, 443, 724
NcoI CCATGG 3 cut(s) 197, 1331, 1527
NdeI CATATG 1 cut(s) 598
NdeII GATC 4 cut(s) 85, 929, 1431, 1499
NlaIV GGNNCC 4 cut(s) 492, 518, 1171, 1384
NmeAIII GCCGAG 1 cut(s) 1004
NmuCI GTSAC 3 cut(s) 173, 1088, 1135
NspI RCATGY 2 cut(s) 1133, 1236
NspV TTCGAA 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 640
PciI ACATGT 2 cut(s) 1129, 1232
PcsI WCGNNNNNNNCGW 1 cut(s) 982
PctI GAATGC 2 cut(s) 955, 1190
PdmI GAANNNNTTC 2 cut(s) 753, 1174
PfeI GAWTC 3 cut(s) 548, 565, 1538
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 9 cut(s) 98, 276, 300, 358, 381, 617, 642, 726, 1102
PscI ACATGT 2 cut(s) 1129, 1232
PsiI TTATAA 2 cut(s) 287, 1341
Psp124BI GAGCTC 1 cut(s) 985
Psp6I CCWGG 6 cut(s) 277, 382, 526, 535, 607, 1438
PspGI CCWGG 6 cut(s) 277, 382, 526, 535, 607, 1438
PspN4I GGNNCC 4 cut(s) 492, 518, 1171, 1384
PspPI GGNCC 2 cut(s) 316, 1382
PstI CTGCAG 1 cut(s) 748
PstNI CAGNNNCTG 1 cut(s) 1103
PvuII CAGCTG 2 cut(s) 356, 944
RsaI GTAC 6 cut(s) 130, 162, 206, 518, 1273, 1397
RsaNI GTAC 6 cut(s) 129, 161, 205, 517, 1272, 1396
RseI CAYNNNNRTG 1 cut(s) 1146
SacI GAGCTC 1 cut(s) 985
SaqAI TTAA 3 cut(s) 815, 846, 1094
SatI GCNGC 9 cut(s) 97, 275, 299, 357, 380, 616, 641, 725, 1101
Sau3AI GATC 4 cut(s) 85, 929, 1431, 1499
Sau96I GGNCC 2 cut(s) 316, 1382
ScrFI CCNGG 6 cut(s) 279, 384, 528, 537, 609, 1440
SduI GDGCHC 2 cut(s) 596, 985
SfaNI GCATC 6 cut(s) 97, 627, 644, 937, 1456, 1477
SfcI CTRYAG 3 cut(s) 744, 999, 1294
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 1146
SmlI CTYRAG 2 cut(s) 76, 873
SmoI CTYRAG 2 cut(s) 76, 873
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 4 cut(s) 496, 684, 808, 1202
SsiI CCGC 6 cut(s) 97, 272, 299, 413, 1101, 1404
SspI AATATT 1 cut(s) 1378
SspMI CTAG 5 cut(s) 45, 246, 645, 1614, 1645
SstI GAGCTC 1 cut(s) 985
StyD4I CCNGG 6 cut(s) 277, 382, 526, 535, 607, 1438
StyI CCWWGG 3 cut(s) 197, 1331, 1527
TaaI ACNGT 3 cut(s) 837, 1020, 1295
TaqI TCGA 4 cut(s) 149, 825, 1178, 1567
TasI AATT 4 cut(s) 496, 684, 808, 1202
TatI WGTACW 2 cut(s) 128, 1395
TauI GCSGC 3 cut(s) 99, 301, 1103
TfiI GAWTC 3 cut(s) 548, 565, 1538
Tru1I TTAA 3 cut(s) 815, 846, 1094
Tru9I TTAA 3 cut(s) 815, 846, 1094
TscAI CASTG 3 cut(s) 142, 874, 957
TseFI GTSAC 3 cut(s) 173, 1088, 1135
TseI GCWGC 6 cut(s) 274, 356, 379, 615, 640, 724
Tsp45I GTSAC 3 cut(s) 173, 1088, 1135
TspDTI ATGAA 4 cut(s) 531, 1280, 1473, 1551
TspRI CASTG 3 cut(s) 142, 874, 957
VneI GTGCAC 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 316
XagI CCTNNNNNAGG 1 cut(s) 1061
XbaI TCTAGA 1 cut(s) 245
XceI RCATGY 2 cut(s) 1133, 1236
XmnI GAANNNNTTC 2 cut(s) 753, 1174
XspI CTAG 5 cut(s) 45, 246, 645, 1614, 1645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.