Rmu_co8353409.1_g000001

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8353409.1
OG0000159
Physical Location & Seq
Reverse (-)
97 .. 687
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8353409.1_g000001.1.cds

Sequence Viewer

Length: 591 bp
atgaatcgacatgtgtcaatatccaaaaaggaattgcttggagaagagtctcaagttcctgatttcatgctcaaatcaaagaaattgcgaaccattctaattcctaaagaaggtcagatgagtcaacgttttgtaaagacatgcgtctcgagattcaaatatatgcgggtgctagatctcagtgggtcacctcttgaggagctaccaagttccattggtagtttgtttcatttgagattcctcaacttgtcttctaatgggaagataaaaaggcttcccaattccatcagtaagctgctgaatttggagaccttggcccttcaggattgcgacgcacttgaggagatacctaaggacatagggaacctgatcaacctacgaagcttggcgataacaacccaacagacctatttgccaaaaggaattagatgcctcaccttacttcaatatctaggttttgttggatgtgttaatcttaaatctttgggcgaagagatccaattcctcaacaaccttcgtatgctgacgattgttagttgtaataatttggaatcctttgttaggatccccaggatccaagcccagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

196

Amino Acids

22.23

Weight (kDa)

9.58

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 166
AclI AACGTT 1 cut(s) 127
AclWI GGATC 5 cut(s) 490, 559, 568, 572, 581
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 110, 561
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 2 cut(s) 157, 446
AjnI CCWGG 1 cut(s) 569
AluBI AGCT 3 cut(s) 202, 295, 384
AluI AGCT 3 cut(s) 202, 295, 384
Alw26I GTCTC 3 cut(s) 54, 151, 302
AlwI GGATC 5 cut(s) 490, 559, 568, 572, 581
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 180, 427
AvaI CYCGRG 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 351
BamHI GGATCC 2 cut(s) 564, 573
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 571
BclI TGATCA 1 cut(s) 369
BcoDI GTCTC 3 cut(s) 54, 151, 302
BfaI CTAG 2 cut(s) 173, 452
BglII AGATCT 1 cut(s) 175
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 3 cut(s) 365, 566, 575
BmrFI CCNGG 1 cut(s) 571
BmsI GCATC 1 cut(s) 419
BoxI GACNNNNGTC 2 cut(s) 13, 143
BpiI GAAGAC 1 cut(s) 243
BpuEI CTTGAG 3 cut(s) 36, 215, 359
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 312, 569
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 561
Bse21I CCTNAGG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 2 cut(s) 312, 569
BseGI GGATG 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 110, 561
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 212, 356
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 110, 561
BsmAI GTCTC 3 cut(s) 54, 151, 302
BsmBI CGTCTC 1 cut(s) 151
BsnI GGCC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 148
Bsp143I GATC 5 cut(s) 175, 369, 495, 564, 573
BspACI CCGC 1 cut(s) 166
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 365, 566, 575
BspPI GGATC 5 cut(s) 490, 559, 568, 572, 581
BspTNI GGTCTC 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 312, 569
BssMI GATC 5 cut(s) 175, 369, 495, 564, 573
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 571
Bst6I CTCTTC 2 cut(s) 39, 486
BstDEI CTNAG 2 cut(s) 179, 351
BstEII GGTNACC 1 cut(s) 186
BstENI CCTNNNNNAGG 2 cut(s) 108, 559
BstF5I GGATG 1 cut(s) 470
BstKTI GATC 5 cut(s) 178, 372, 498, 567, 576
BstMAI GTCTC 3 cut(s) 54, 151, 302
BstMBI GATC 5 cut(s) 175, 369, 495, 564, 573
BstNI CCWGG 1 cut(s) 571
BstNSI RCATGY 2 cut(s) 14, 144
BstPAI GACNNNNGTC 2 cut(s) 13, 143
BstPI GGTNACC 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 4 cut(s) 175, 495, 564, 573
BstYI RGATCY 4 cut(s) 175, 495, 564, 573
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 316
CseI GACGC 2 cut(s) 133, 341
CviAII CATG 3 cut(s) 11, 67, 141
CviJI RGCY 6 cut(s) 202, 274, 295, 317, 384, 581
CviKI_1 RGCY 6 cut(s) 202, 274, 295, 317, 384, 581
DdeI CTNAG 2 cut(s) 179, 351
DpnI GATC 5 cut(s) 177, 371, 497, 566, 575
DpnII GATC 5 cut(s) 175, 369, 495, 564, 573
Eam1104I CTCTTC 2 cut(s) 39, 486
EarI CTCTTC 2 cut(s) 39, 486
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 305
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 148
Eco91I GGTNACC 1 cut(s) 186
EcoNI CCTNNNNNAGG 2 cut(s) 108, 559
EcoO65I GGTNACC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 3 cut(s) 14, 70, 144
FaiI YATR 7 cut(s) 12, 68, 142, 162, 164, 359, 521
FatI CATG 3 cut(s) 10, 66, 140
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 1 cut(s) 477
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 2 cut(s) 173, 452
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 1 cut(s) 317
HgaI GACGC 2 cut(s) 133, 341
Hin1II CATG 3 cut(s) 14, 70, 144
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 6 cut(s) 4, 47, 121, 153, 237, 551
HphI GGTGA 2 cut(s) 180, 427
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 5 cut(s) 59, 148, 150, 194, 323
Hpy8I GTNNAC 1 cut(s) 125
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 3 cut(s) 104, 329, 524
HpyCH4IV ACGT 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 179, 351
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 14, 70, 144
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 5 cut(s) 175, 369, 495, 564, 573
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 5 cut(s) 72, 308, 380, 556, 583
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 419
MaeI CTAG 2 cut(s) 173, 452
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 186
MalI GATC 5 cut(s) 177, 371, 497, 566, 575
MboI GATC 5 cut(s) 175, 369, 495, 564, 573
MboII GAAGA 4 cut(s) 56, 243, 274, 503
MflI RGATCY 4 cut(s) 175, 495, 564, 573
MluCI AATT 8 cut(s) 32, 83, 99, 280, 301, 423, 500, 544
MlyI GAGTC 2 cut(s) 56, 130
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 6 cut(s) 190, 201, 251, 334, 443, 515
MseI TTAA 2 cut(s) 471, 477
MspR9I CCNGG 1 cut(s) 571
MvaI CCWGG 1 cut(s) 571
NdeII GATC 5 cut(s) 175, 369, 495, 564, 573
NlaIII CATG 3 cut(s) 14, 70, 144
NlaIV GGNNCC 3 cut(s) 365, 566, 575
NmuCI GTSAC 1 cut(s) 186
NspI RCATGY 2 cut(s) 14, 144
PaeR7I CTCGAG 1 cut(s) 148
PciI ACATGT 1 cut(s) 10
PfeI GAWTC 4 cut(s) 4, 153, 237, 551
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 2 cut(s) 55, 129
PpsI GAGTC 2 cut(s) 55, 129
PscI ACATGT 1 cut(s) 10
PshAI GACNNNNGTC 2 cut(s) 13, 143
Psp1406I AACGTT 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 569
PspEI GGTNACC 1 cut(s) 186
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 365, 566, 575
PspPI GGNCC 1 cut(s) 316
PsuI RGATCY 4 cut(s) 175, 495, 564, 573
SaqAI TTAA 2 cut(s) 471, 477
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 5 cut(s) 175, 369, 495, 564, 573
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 2 cut(s) 56, 130
ScrFI CCNGG 1 cut(s) 571
SfaNI GCATC 1 cut(s) 419
Sfr274I CTCGAG 1 cut(s) 148
SlaI CTCGAG 1 cut(s) 148
SmlI CTYRAG 4 cut(s) 51, 148, 194, 338
SmoI CTYRAG 4 cut(s) 51, 148, 194, 338
Sse9I AATT 8 cut(s) 32, 83, 99, 280, 301, 423, 500, 544
SsiI CCGC 1 cut(s) 166
SspMI CTAG 2 cut(s) 173, 452
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 312
TaiI ACGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 7, 149
TasI AATT 8 cut(s) 32, 83, 99, 280, 301, 423, 500, 544
TfiI GAWTC 4 cut(s) 4, 153, 237, 551
Tru1I TTAA 2 cut(s) 471, 477
Tru9I TTAA 2 cut(s) 471, 477
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 3 cut(s) 17, 55, 218
TspRI CASTG 1 cut(s) 187
XagI CCTNNNNNAGG 2 cut(s) 108, 559
XapI RAATTY 1 cut(s) 301
XceI RCATGY 2 cut(s) 14, 144
XhoI CTCGAG 1 cut(s) 148
XspI CTAG 2 cut(s) 173, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.