Rorug02G0209300

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
19651621 .. 19653659
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0209300.1

Sequence Viewer

Length: 1101 bp
ATGGAGCTTACTCAACATGGGTTCTTGGAGGAGCTACTAGCTCCAATTAGAAGAGAGAGTTGGAACACATACTCTTCTGGGTTTAATGAGTTCTTTCCTATGAATAATGGGTGGAGCTTTGATTCCAATTTTGAAGAGAACCCAGTTCTAGTTTCCTCATCAAACCCTGGATTTGGTGTGTTCTCCACCCAAACTGAGCCAACCTTTGAATGCCCATTACTCACTGAGCAACAAGCCTCATCCTTCCCTTTTGTTGATGGAGGTGGGGTGCTCACAGTCCCAGCTGAGATTGAATCCTCATACACCAACAACAATGACAGCAATACCCCTCCATTCCCACCCCAAGATCAAGACTACCCTTCAATGGTGGAGGATGAGGAGTTTGGAAATTTCCTTGGGAGTGAAAACCAGAGCAGCTGTTTGGAGTTGGAAGAGAGCAAGAACAGTACTTGCAAAGTTGAGACAGAGCAACAAGGCACTACTATCACTACAGATCATGGTGACATGCCTGTGGCTTTCAATATGGGATTGTGTGGTGGAAAGAGAAGCTGCAGCAGCAAGCCTAAGAAGTTAGAAGGGCAGCCTTCAAAGAACCTAATGGCAGAGAGAAGAAGAAGGAAGCGCTTGAATGACCGCCTTTCTATGCTCAGATCAATAGTCCCCAAGATTAGCAAGATGGACAGAACATCTATACTTGGAGACACAATAGACTACATGAAAGAGCTTTTGGAAAGAATCAGCAAGTTGCAAGAAGAGAAAACTGAAGAGGGTACAAATCAGTTCAGCTTAATAGGCATCAACAAGGACCTAAACCCAAGTGAGGTCTTGGTGAGAAATTCCCCCAAGTTTGATGTGGAGAGGAGAGACATGGACACCAGAATAGACATCTGCTGTGCAGCCAAGCAAGGATTGCTGCTTTCAACAGTGAGCACTATAGAAGCACTTGGCCTTGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTTTCATTGCAAGCCTCTTGTTCAGAGGGAGCAGAGCAGAGAACAATGATTAATTCTGAGGAAATAAAGCAAGCGTTGTTCAGAAATGCAGGGTATGGAGGGAGATGCTTGTAG

Protein Analysis

366

Amino Acids

40.92

Weight (kDa)

4.68

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 200 - 242 7.6e-10 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 285 - 357 1.3e-08 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 634
AcsI RAATTY 2 cut(s) 388, 835
AcuI CTGAAG 1 cut(s) 783
AfaI GTAC 2 cut(s) 448, 772
AfeI AGCGCT 1 cut(s) 623
AfiI CCNNNNNNNGG 3 cut(s) 173, 364, 820
AgsI TTSAA 9 cut(s) 134, 209, 293, 363, 520, 588, 628, 921, 982
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 4 cut(s) 43, 75, 710, 742
Alw21I GWGCWC 2 cut(s) 273, 932
Alw26I GTCTC 3 cut(s) 455, 693, 858
Aor51HI AGCGCT 1 cut(s) 623
AoxI GGCC 1 cut(s) 946
ApeKI GCWGC 8 cut(s) 414, 549, 552, 555, 580, 896, 913, 975
ApoI RAATTY 2 cut(s) 388, 835
AseI ATTAAT 1 cut(s) 1038
AspLEI GCGC 1 cut(s) 624
AspS9I GGNCC 1 cut(s) 805
AsuHPI GGTGA 2 cut(s) 512, 841
AvaII GGWCC 1 cut(s) 805
Bbv12I GWGCWC 2 cut(s) 273, 932
BbvI GCAGC 8 cut(s) 426, 536, 564, 567, 592, 900, 908, 962
BccI CCATC 2 cut(s) 251, 670
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 3 cut(s) 455, 693, 858
BfaI CTAG 2 cut(s) 38, 149
BfmI CTRYAG 3 cut(s) 489, 550, 933
BfoI RGCGCY 1 cut(s) 625
BisI GCNGC 8 cut(s) 415, 550, 553, 556, 581, 897, 914, 976
BlsI GCNGC 8 cut(s) 416, 551, 554, 557, 582, 898, 915, 977
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 805
BmgT120I GGNCC 1 cut(s) 805
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 2 cut(s) 804, 1082
BmuI ACTGGG 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 971
BsaJI CCNNGG 2 cut(s) 166, 394
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 364, 820
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 992
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 166, 394
BseGI GGATG 2 cut(s) 239, 379
BseLI CCNNNNNNNGG 3 cut(s) 173, 364, 820
BseMI GCAATG 1 cut(s) 992
BseMII CTCAG 5 cut(s) 186, 216, 276, 661, 1035
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 3 cut(s) 44, 392, 874
BseXI GCAGC 8 cut(s) 426, 536, 564, 567, 592, 900, 908, 962
BseYI CCCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 1 cut(s) 948
BsiHKAI GWGCWC 2 cut(s) 273, 932
BslFI GGGAC 2 cut(s) 263, 644
BslI CCNNNNNNNGG 3 cut(s) 173, 364, 820
BsmAI GTCTC 3 cut(s) 455, 693, 858
BsmFI GGGAC 2 cut(s) 263, 644
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 1 cut(s) 948
Bsp1286I GDGCHC 2 cut(s) 273, 932
Bsp143I GATC 3 cut(s) 346, 493, 650
BspACI CCGC 1 cut(s) 634
BspANI GGCC 1 cut(s) 948
BspCNI CTCAG 5 cut(s) 187, 217, 277, 660, 1036
BspMAI CTGCAG 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 992
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 166, 394
BssMI GATC 3 cut(s) 346, 493, 650
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 277, 446, 925
Bst6I CTCTTC 6 cut(s) 46, 79, 129, 426, 747, 759
BstAPI GCANNNNNTGC 1 cut(s) 910
BstC8I GCNNGC 3 cut(s) 560, 999, 1059
BstDEI CTNAG 6 cut(s) 195, 225, 285, 564, 647, 1044
BstF5I GGATG 2 cut(s) 239, 379
BstH2I RGCGCY 1 cut(s) 625
BstHHI GCGC 1 cut(s) 624
BstKTI GATC 3 cut(s) 349, 496, 653
BstMAI GTCTC 3 cut(s) 455, 693, 858
BstMBI GATC 3 cut(s) 346, 493, 650
BstMWI GCNNNNNNNGC 3 cut(s) 555, 792, 910
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 3 cut(s) 489, 550, 933
BstV1I GCAGC 8 cut(s) 426, 536, 564, 567, 592, 900, 908, 962
BsuRI GGCC 1 cut(s) 948
BtsCI GGATG 2 cut(s) 239, 379
BtsI GCAGTG 1 cut(s) 968
BtsIMutI CAGTG 3 cut(s) 222, 930, 968
Cac8I GCNNGC 3 cut(s) 560, 999, 1059
CfoI GCGC 1 cut(s) 624
Cfr13I GGNCC 1 cut(s) 805
Csp6I GTAC 2 cut(s) 447, 771
CviAII CATG 5 cut(s) 17, 497, 505, 715, 868
CviQI GTAC 2 cut(s) 447, 771
DdeI CTNAG 6 cut(s) 195, 225, 285, 564, 647, 1044
DpnI GATC 3 cut(s) 348, 495, 652
DpnII GATC 3 cut(s) 346, 493, 650
Eam1104I CTCTTC 6 cut(s) 46, 79, 129, 426, 747, 759
EarI CTCTTC 6 cut(s) 46, 79, 129, 426, 747, 759
Eco130I CCWWGG 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 805
Eco47III AGCGCT 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 783
EcoO109I RGGNCCY 1 cut(s) 805
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 5 cut(s) 20, 500, 508, 718, 871
FaqI GGGAC 2 cut(s) 263, 644
FatI CATG 5 cut(s) 16, 496, 504, 714, 867
Fnu4HI GCNGC 8 cut(s) 415, 550, 553, 556, 581, 897, 914, 976
FokI GGATG 2 cut(s) 226, 386
Fsp4HI GCNGC 8 cut(s) 415, 550, 553, 556, 581, 897, 914, 976
FspBI CTAG 2 cut(s) 38, 149
GlaI GCGC 1 cut(s) 623
GluI GCNGC 8 cut(s) 415, 550, 553, 556, 581, 897, 914, 976
GsaI CCCAGC 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 625
HaeIII GGCC 1 cut(s) 948
HhaI GCGC 1 cut(s) 624
Hin1II CATG 5 cut(s) 20, 500, 508, 718, 871
Hin6I GCGC 1 cut(s) 622
HinP1I GCGC 1 cut(s) 622
HinfI GANTC 4 cut(s) 122, 293, 735, 955
HphI GGTGA 2 cut(s) 512, 841
Hpy188I TCNGA 4 cut(s) 650, 1012, 1045, 1070
Hpy188III TCNNGA 1 cut(s) 350
HpyAV CCTTC 5 cut(s) 253, 369, 569, 594, 609
HpyCH4III ACNGT 3 cut(s) 277, 446, 925
HpyCH4V TGCA 6 cut(s) 453, 552, 748, 896, 997, 1076
HpyF10VI GCNNNNNNNGC 3 cut(s) 555, 792, 910
HpyF3I CTNAG 6 cut(s) 195, 225, 285, 564, 647, 1044
Hsp92II CATG 5 cut(s) 20, 500, 508, 718, 871
HspAI GCGC 1 cut(s) 622
Kzo9I GATC 3 cut(s) 346, 493, 650
LmnI GCTCC 5 cut(s) 4, 31, 46, 114, 1016
LpnPI CCDG 9 cut(s) 63, 153, 156, 180, 294, 422, 522, 889, 1062
Lsp1109I GCAGC 8 cut(s) 426, 536, 564, 567, 592, 900, 908, 962
LweI GCATC 2 cut(s) 804, 1082
MaeI CTAG 2 cut(s) 38, 149
MaeIII GTNAC 1 cut(s) 500
MalI GATC 3 cut(s) 348, 495, 652
MboI GATC 3 cut(s) 346, 493, 650
MboII GAAGA 8 cut(s) 63, 66, 146, 443, 621, 624, 764, 776
MhlI GDGCHC 2 cut(s) 273, 932
MluCI AATT 5 cut(s) 45, 127, 388, 835, 1039
MmeI TCCRAC 2 cut(s) 41, 408
MseI TTAA 3 cut(s) 84, 788, 1038
MslI CAYNNNNRTG 1 cut(s) 509
MspA1I CMGCKG 2 cut(s) 284, 417
MspR9I CCNGG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 555, 792, 910
NdeII GATC 3 cut(s) 346, 493, 650
NlaIII CATG 5 cut(s) 20, 500, 508, 718, 871
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 1 cut(s) 508
PctI GAATGC 1 cut(s) 215
PfeI GAWTC 4 cut(s) 122, 293, 735, 955
PkrI GCNGC 8 cut(s) 416, 551, 554, 557, 582, 898, 915, 977
PpuMI RGGWCCY 1 cut(s) 805
PshBI ATTAAT 1 cut(s) 1038
Psp5II RGGWCCY 1 cut(s) 805
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 805
PspPPI RGGWCCY 1 cut(s) 805
PstI CTGCAG 1 cut(s) 554
PvuII CAGCTG 2 cut(s) 284, 417
RsaI GTAC 2 cut(s) 448, 772
RsaNI GTAC 2 cut(s) 447, 771
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 3 cut(s) 84, 788, 1038
SatI GCNGC 8 cut(s) 415, 550, 553, 556, 581, 897, 914, 976
Sau3AI GATC 3 cut(s) 346, 493, 650
Sau96I GGNCC 1 cut(s) 805
ScaI AGTACT 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 273, 932
SfaNI GCATC 2 cut(s) 804, 1082
SfcI CTRYAG 3 cut(s) 489, 550, 933
SinI GGWCC 1 cut(s) 805
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
Sse9I AATT 5 cut(s) 45, 127, 388, 835, 1039
SsiI CCGC 1 cut(s) 634
SspMI CTAG 2 cut(s) 38, 149
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 277, 446, 925
TasI AATT 5 cut(s) 45, 127, 388, 835, 1039
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 4 cut(s) 122, 293, 735, 955
Tru1I TTAA 3 cut(s) 84, 788, 1038
Tru9I TTAA 3 cut(s) 84, 788, 1038
TscAI CASTG 3 cut(s) 229, 930, 968
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 8 cut(s) 414, 549, 552, 555, 580, 896, 913, 975
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 3 cut(s) 116, 731, 981
TspRI CASTG 3 cut(s) 229, 930, 968
VpaK11BI GGWCC 1 cut(s) 805
VspI ATTAAT 1 cut(s) 1038
XapI RAATTY 2 cut(s) 388, 835
XceI RCATGY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 850
XspI CTAG 2 cut(s) 38, 149
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.