Rorug02G0213200

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
20335763 .. 20343712
7950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0213200.1

Sequence Viewer

Length: 2211 bp
ATGGAGAAGGCGGATCGTCGGAGCTTGAGGCATTGGGGTTTGCTTGTTGGGACATTAGCAGCAATGCTTGTTCTGGTTGTTTGCCTGGTTGGTGAAAAAAAATACGAGAAGACCACCCCGAAGACCACCCTACAATTAAGAAAATTACTTCGGAGAGATCCTAGAACACTATGCCAGGGCATGAACATTCTGAAAATCCCTAGTAGCCGGAGGAACATTTCTAGACCACCAAATCCAGGGTTCAACGTGGTAACAAAGAATAGTGGGCGGAGGATTGTTGCAAGAACACAATATCGGATAGTCACCATGCTAAAGACTCCTAGGCAGATTACGCTGGATAATGGCCTCATCCAACTCATAGTTTCTCGTCCCAGCGGAGATGTCGTTGGAATAAAATACAAACGAAGCGACAACTTGCTTGAACCCAATAATCTACGAAATAATAGAGGGTACTGGGATGTGGTCTGGAACACACCGGGAGATAATATATATTATGTTGATAAACTACAAGCAACAAGATCTAGAGTTATTATGGCAACGGAAGACCAAGTTGAAATTTCTTTTGTCAAAACATATAATGTTTCCCAGCAGCTTGGTGCCCCTGAAGTTCCTTTGAATGTAGATAAAAGGTACATACTGCGACGCGGTCGTTCAGGGTTCTATGCGTATGCCATATTCGAGTGCCTTGAAGGGTGGCCGGAAGTGAAGATTGATCAAGTTAGAATGGTTTACAAGCTTCAAAAAGACAAATTTCAGTATATGGCTTTATCAGACACTAGGCAAACATTCATGCCAAGAGCCAACGACCGTAAACATGGTCAGCAACTTGCCTATCCTGAAGCCGTTCGTTTAACCAAACCAAGTAATCAGGCCCTTAAAGGACAGGTCGATGACAAGTACCAGTACTCAATGGAGGACAAAGATAACAAGGTCCATGGATGGATTTCTACAGACCATTCGGTGGGATTCTGGATGATCACACCCAGTGATGAATTTCGTTCCGCTGGACCCATGAAGCAGGGCCTAACATCCCATGTTGGTCCAACTACCCTCTCGATGTTTGTTAGTACTCATTATGCTGGGAAGCGAGCGGGGATAGAATTGAAAGAAGGTGAGGCATGGAAAAAGGTTTTTGGGCCTGTCTTTGTGTATCTTAATTCCGCTCCAAGATCAAAAAATACCACCGGTACACTCTGGAATGATGCGAAGGAGCAGATGATTGAAGAAGTCAAAAGATGGCCATACAATTTCACTCAATCCAAAGACCTTCCTTCTTCAGATCAACGGGGATCGATTTGTGGTCGACTAATAGTACATGATCGGTACATGAATGAGAGCCTTCTTTCGGAAAGTTCTGCATATGTGGGATTAGCTGCACCTGGAGAAGTGGGATCCTGGCAAACAGAAAGTAAGGGTTACCAATTCTGGATTCAGGCTGACAAACTAGGTTATTTTCTCATTAAAGATGTTCGACCTGGGAACTATAGTCTGTATGCTTGGGTCCCAGGCATTGTTGGAGATTACAAATATGAGGCTGATATTACCATTAAACCAGGAAGTAAAATCAAATTGGGTAATCTTACTTATGAGCCTCCAAGAAATGGTCCTACCTTGTGGGAAATCGGTATCCCCGATCGAAGTGCCGCTGAGTTCTATGTACCGGATCCACATCCAACTCTCATGAACAAATTGTACAAAAACAATCACTCGGACAAGTTTAGACAATACGGGTTGTGGAAACGTTATGAAGAGCTATACCCCCACCATGATCTTATCTACACCATTGGCATTAACGATTATCGTTATGATTGGTTCTATGCTCATGTGACCAGGAATATTGGAAAGCAAAAGTATGTGGGAACCACCTGGCAAATTCGATTTAAACTTAACAATGTCATGAGTCAAGGAAATTATACACTCCAATTAGCATTGGCGTCAGCTACTTCTTCAGAAATACAGGTTCGATTTAACAACCGGAGTATTGCGCCACCTCATTTTTCGACGGGGCTAATAGGAGGGGACAATGCCATAGCAAGACATGGAATTCATGGTTTGTATTGGTTCTTCAGTATTAATGTACCAAGTTCTCTGCTACATGAAGGAAACAACATAATCTATCTTACTCAGTCCAGAGGGGGAGCACCTTTTCGAGGAGTCATGTATGACTATATTAGACTAGAAGGACCTTCCATTAGACATGCAGACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

736

Amino Acids

84.36

Weight (kDa)

9.61

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 96 - 296 7.3e-72 Rhamnogalacturonate lyase family
fn3_3 PF14686 452 - 524 2.2e-25 Polysaccharide lyase family 4, domain II
CBM-like PF14683 537 - 726 2.5e-49 Polysaccharide lyase family 4, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 596
AccB7I CCANNNNNTGG 2 cut(s) 961, 1601
AccBSI CCGCTC 2 cut(s) 1091, 1163
AccI GTMKAC 1 cut(s) 1303
AccII CGCG 1 cut(s) 645
AciI CCGC 8 cut(s) 11, 268, 375, 645, 1002, 1091, 1161, 1644
AclI AACGTT 1 cut(s) 1741
AclWI GGATC 7 cut(s) 21, 152, 1297, 1386, 1399, 1658, 1671
AcoI YGGCCR 2 cut(s) 695, 1238
AcsI RAATTY 5 cut(s) 555, 749, 992, 1872, 2043
AcuI CTGAAG 5 cut(s) 624, 858, 1260, 1932, 2050
AcyI GRCGYC 1 cut(s) 1934
AdeI CACNNNGTG 1 cut(s) 986
AfiI CCNNNNNNNGG 5 cut(s) 236, 961, 1345, 1601, 2150
AgeI ACCGGT 1 cut(s) 1184
AgsI TTSAA 8 cut(s) 244, 422, 554, 616, 689, 740, 1105, 1223
AjuI GAANNNNNNNTTGG 2 cut(s) 1413, 1445
AluBI AGCT 6 cut(s) 24, 592, 736, 1373, 1753, 1940
AluI AGCT 6 cut(s) 24, 592, 736, 1373, 1753, 1940
Alw21I GWGCWC 1 cut(s) 2143
AlwI GGATC 7 cut(s) 21, 152, 1297, 1386, 1399, 1658, 1671
AoxI GGCC 6 cut(s) 343, 695, 870, 1021, 1136, 1238
ApeKI GCWGC 3 cut(s) 59, 589, 1373
ApoI RAATTY 5 cut(s) 555, 749, 992, 1872, 2043
AseI ATTAAT 1 cut(s) 2073
AsiGI ACCGGT 1 cut(s) 1184
Asp700I GAANNNNTTC 1 cut(s) 843
AspA2I CCTAGG 1 cut(s) 320
AspLEI GCGC 1 cut(s) 1987
AspS9I GGNCC 9 cut(s) 871, 931, 1007, 1021, 1040, 1136, 1501, 1604, 2183
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 104, 295, 1124
AvaII GGWCC 6 cut(s) 931, 1007, 1040, 1501, 1604, 2183
AvrII CCTAGG 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 601
BalI TGGCCA 1 cut(s) 1240
BamHI GGATCC 2 cut(s) 1391, 1663
BanI GGYRCC 1 cut(s) 596
BarI GAAGNNNNNNTAC 2 cut(s) 2048, 2080
BbsI GAAGAC 3 cut(s) 116, 128, 549
Bbv12I GWGCWC 1 cut(s) 2143
BbvI GCAGC 3 cut(s) 71, 601, 1360
BccI CCATC 2 cut(s) 933, 1230
BceAI ACGGC 1 cut(s) 827
BcgI CGANNNNNNTGC 2 cut(s) 1622, 1656
BciVI GTATCC 1 cut(s) 1637
BclI TGATCA 2 cut(s) 712, 975
BcnI CCSGG 1 cut(s) 477
BfaI CTAG 8 cut(s) 162, 201, 222, 321, 522, 777, 1445, 2177
BfmI CTRYAG 2 cut(s) 948, 1483
BfuI GTATCC 1 cut(s) 1637
BglII AGATCT 1 cut(s) 518
BisI GCNGC 4 cut(s) 60, 590, 1374, 1644
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 4 cut(s) 61, 591, 1375, 1645
BmcAI AGTACT 2 cut(s) 905, 1069
Bme18I GGWCC 6 cut(s) 931, 1007, 1040, 1501, 1604, 2183
BmgT120I GGNCC 9 cut(s) 871, 931, 1007, 1021, 1040, 1136, 1501, 1604, 2183
BmiI GGNNCC 7 cut(s) 598, 1009, 1393, 1502, 1503, 1665, 1861
BmrI ACTGGG 2 cut(s) 463, 978
BmsI GCATC 1 cut(s) 1192
BmuI ACTGGG 2 cut(s) 463, 978
BpiI GAAGAC 3 cut(s) 116, 128, 549
BpmI CTGGAG 1 cut(s) 1401
BpuEI CTTGAG 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 1292
BsaBI GATNNNNATC 1 cut(s) 1668
BsaHI GRCGYC 1 cut(s) 1934
BsaJI CCNNGG 6 cut(s) 175, 236, 320, 934, 1475, 1504
BsaWI WCCGGW 3 cut(s) 1184, 1660, 1974
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 5 cut(s) 236, 961, 1345, 1601, 2150
Bse118I RCCGGY 1 cut(s) 1184
Bse1I ACTGG 3 cut(s) 458, 901, 984
Bse3DI GCAATG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 1668
BseCI ATCGAT 1 cut(s) 1292
BseDI CCNNGG 6 cut(s) 175, 236, 320, 934, 1475, 1504
BseGI GGATG 6 cut(s) 348, 463, 944, 978, 1028, 1669
BseJI GATNNNNATC 1 cut(s) 1668
BseLI CCNNNNNNNGG 5 cut(s) 236, 961, 1345, 1601, 2150
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 1638, 2138
BseNI ACTGG 3 cut(s) 458, 901, 984
BseRI GAGGAG 1 cut(s) 2166
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 3 cut(s) 71, 601, 1360
BseYI CCCAGC 3 cut(s) 371, 585, 1079
BsgI GTGCAG 1 cut(s) 1359
Bsh1236I CGCG 1 cut(s) 645
Bsh1285I CGRYCG 3 cut(s) 649, 808, 1636
BshFI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
BshNI GGYRCC 1 cut(s) 596
BshTI ACCGGT 1 cut(s) 1184
BshVI ATCGAT 1 cut(s) 1292
BsiEI CGRYCG 3 cut(s) 649, 808, 1636
BsiHKAI GWGCWC 1 cut(s) 2143
BsiSI CCGG 6 cut(s) 208, 476, 698, 1185, 1661, 1975
BslFI GGGAC 4 cut(s) 64, 354, 1487, 2033
BslI CCNNNNNNNGG 5 cut(s) 236, 961, 1345, 1601, 2150
BsmFI GGGAC 4 cut(s) 64, 354, 1487, 2033
BsnI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
Bsp1286I GDGCHC 2 cut(s) 601, 2143
Bsp1407I TGTACA 1 cut(s) 1692
Bsp19I CCATGG 1 cut(s) 934
BspACI CCGC 8 cut(s) 11, 268, 375, 645, 1002, 1091, 1161, 1644
BspANI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
BspCNI CTCAG 2 cut(s) 1639, 2137
BspDI ATCGAT 1 cut(s) 1292
BspFNI CGCG 1 cut(s) 645
BspHI TCATGA 2 cut(s) 1680, 1896
BspLI GGNNCC 7 cut(s) 598, 1009, 1393, 1502, 1503, 1665, 1861
BspPI GGATC 7 cut(s) 21, 152, 1297, 1386, 1399, 1658, 1671
BspQI GCTCTTC 1 cut(s) 1743
BspT107I GGYRCC 1 cut(s) 596
BsrBI CCGCTC 2 cut(s) 1091, 1163
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 1184
BsrGI TGTACA 1 cut(s) 1692
BsrI ACTGG 3 cut(s) 458, 901, 984
BssAI RCCGGY 1 cut(s) 1184
BssECI CCNNGG 6 cut(s) 175, 236, 320, 934, 1475, 1504
BssNI GRCGYC 1 cut(s) 1934
BssT1I CCWWGG 2 cut(s) 320, 934
Bst4CI ACNGT 1 cut(s) 809
Bst6I CTCTTC 1 cut(s) 1743
BstACI GRCGYC 1 cut(s) 1934
BstAUI TGTACA 1 cut(s) 1692
BstC8I GCNNGC 1 cut(s) 1089
BstDEI CTNAG 2 cut(s) 1647, 2124
BstDSI CCRYGG 1 cut(s) 934
BstEII GGTNACC 1 cut(s) 1415
BstENI CCTNNNNNAGG 1 cut(s) 2148
BstF5I GGATG 6 cut(s) 348, 463, 944, 978, 1028, 1669
BstFNI CGCG 1 cut(s) 645
BstHHI GCGC 1 cut(s) 1987
BstMCI CGRYCG 3 cut(s) 649, 808, 1636
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 2201
BstPI GGTNACC 1 cut(s) 1415
BstSFI CTRYAG 2 cut(s) 948, 1483
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 3 cut(s) 71, 601, 1360
BstV2I GAAGAC 3 cut(s) 116, 128, 549
BstX2I RGATCY 4 cut(s) 157, 518, 1391, 1663
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 4 cut(s) 157, 518, 1391, 1663
Bsu15I ATCGAT 1 cut(s) 1292
BsuI GTATCC 1 cut(s) 1637
BsuRI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
BsuTUI ATCGAT 1 cut(s) 1292
BtgI CCRYGG 1 cut(s) 934
BtsCI GGATG 6 cut(s) 348, 463, 944, 978, 1028, 1669
BtsIMutI CAGTG 1 cut(s) 991
Cac8I GCNNGC 1 cut(s) 1089
CciI TCATGA 2 cut(s) 1680, 1896
CfoI GCGC 1 cut(s) 1987
Cfr10I RCCGGY 1 cut(s) 1184
Cfr13I GGNCC 9 cut(s) 871, 931, 1007, 1021, 1040, 1136, 1501, 1604, 2183
ClaI ATCGAT 1 cut(s) 1292
CseI GACGC 2 cut(s) 651, 1923
CspAI ACCGGT 1 cut(s) 1184
DdeI CTNAG 2 cut(s) 1647, 2124
DraI TTTAAA 1 cut(s) 1882
DraIII CACNNNGTG 1 cut(s) 986
EaeI YGGCCR 2 cut(s) 695, 1238
Eam1104I CTCTTC 1 cut(s) 1743
EarI CTCTTC 1 cut(s) 1743
EciI GGCGGA 2 cut(s) 26, 283
Eco130I CCWWGG 2 cut(s) 320, 934
Eco47I GGWCC 6 cut(s) 931, 1007, 1040, 1501, 1604, 2183
Eco57I CTGAAG 5 cut(s) 624, 858, 1260, 1932, 2050
Eco91I GGTNACC 1 cut(s) 1415
EcoNI CCTNNNNNAGG 1 cut(s) 2148
EcoO109I RGGNCCY 4 cut(s) 871, 1021, 1501, 2183
EcoO65I GGTNACC 1 cut(s) 1415
EcoRI GAATTC 1 cut(s) 2043
EcoT14I CCWWGG 2 cut(s) 320, 934
ErhI CCWWGG 2 cut(s) 320, 934
FaqI GGGAC 4 cut(s) 64, 354, 1487, 2033
FauI CCCGC 1 cut(s) 1084
FauNDI CATATG 1 cut(s) 1360
FbaI TGATCA 2 cut(s) 712, 975
FblI GTMKAC 1 cut(s) 1303
Fnu4HI GCNGC 4 cut(s) 60, 590, 1374, 1644
FokI GGATG 6 cut(s) 335, 470, 951, 985, 1015, 1656
Fsp4HI GCNGC 4 cut(s) 60, 590, 1374, 1644
FspBI CTAG 8 cut(s) 162, 201, 222, 321, 522, 777, 1445, 2177
GlaI GCGC 1 cut(s) 1986
GluI GCNGC 4 cut(s) 60, 590, 1374, 1644
GsaI CCCAGC 3 cut(s) 375, 589, 1083
GsuI CTGGAG 1 cut(s) 1401
HaeIII GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
HapII CCGG 6 cut(s) 208, 476, 698, 1185, 1661, 1975
HgaI GACGC 2 cut(s) 651, 1923
HhaI GCGC 1 cut(s) 1987
Hin1I GRCGYC 1 cut(s) 1934
Hin6I GCGC 1 cut(s) 1985
HinP1I GCGC 1 cut(s) 1985
HincII GTYRAC 1 cut(s) 1304
HindII GTYRAC 1 cut(s) 1304
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 5 cut(s) 316, 966, 1429, 1900, 2154
HpaII CCGG 6 cut(s) 208, 476, 698, 1185, 1661, 1975
HphI GGTGA 3 cut(s) 104, 295, 1124
Hpy166II GTNNAC 4 cut(s) 730, 812, 1190, 1304
Hpy188I TCNGA 9 cut(s) 21, 153, 192, 297, 772, 1279, 1348, 1711, 1951
Hpy8I GTNNAC 4 cut(s) 730, 812, 1190, 1304
Hpy99I CGWCG 3 cut(s) 21, 645, 2005
HpyAV CCTTC 9 cut(s) 683, 1103, 1201, 1277, 1281, 1349, 2093, 2174, 2196
HpyCH4III ACNGT 1 cut(s) 809
HpyCH4IV ACGT 2 cut(s) 246, 1741
HpyCH4V TGCA 4 cut(s) 281, 1358, 1376, 2201
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 1647, 2124
HpySE526I ACGT 2 cut(s) 246, 1741
Hsp92I GRCGYC 1 cut(s) 1934
HspAI GCGC 1 cut(s) 1985
KflI GGGWCCC 1 cut(s) 1501
Ksp22I TGATCA 2 cut(s) 712, 975
LguI GCTCTTC 1 cut(s) 1743
LmnI GCTCC 4 cut(s) 21, 1168, 1210, 2138
Lsp1109I GCAGC 3 cut(s) 71, 601, 1360
LweI GCATC 1 cut(s) 1192
MaeI CTAG 8 cut(s) 162, 201, 222, 321, 522, 777, 1445, 2177
MaeII ACGT 2 cut(s) 246, 1741
MaeIII GTNAC 4 cut(s) 250, 301, 1415, 1825
MbiI CCGCTC 2 cut(s) 1091, 1163
MboII GAAGA 9 cut(s) 121, 133, 554, 718, 1235, 1266, 1760, 1938, 2056
MflI RGATCY 4 cut(s) 157, 518, 1391, 1663
MhlI GDGCHC 2 cut(s) 601, 2143
MlsI TGGCCA 1 cut(s) 1240
MluNI TGGCCA 1 cut(s) 1240
MlyI GAGTC 3 cut(s) 310, 1909, 2163
MmeI TCCRAC 5 cut(s) 367, 376, 1067, 1495, 1697
Mox20I TGGCCA 1 cut(s) 1240
MroXI GAANNNNTTC 1 cut(s) 843
MscI TGGCCA 1 cut(s) 1240
Msp20I TGGCCA 1 cut(s) 1240
MspA1I CMGCKG 3 cut(s) 375, 1004, 1646
MspI CCGG 6 cut(s) 208, 476, 698, 1185, 1661, 1975
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 1 cut(s) 934
NdeI CATATG 1 cut(s) 1360
NlaIV GGNNCC 7 cut(s) 598, 1009, 1393, 1502, 1503, 1665, 1861
NmuCI GTSAC 2 cut(s) 301, 1825
NspI RCATGY 1 cut(s) 2201
PagI TCATGA 2 cut(s) 1680, 1896
PciSI GCTCTTC 1 cut(s) 1743
PcsI WCGNNNNNNNCGW 1 cut(s) 1629
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 2 cut(s) 966, 1429
PflFI GACNNNGTC 1 cut(s) 645
PflMI CCANNNNNTGG 2 cut(s) 961, 1601
PinAI ACCGGT 1 cut(s) 1184
PkrI GCNGC 4 cut(s) 61, 591, 1375, 1645
Ple19I CGATCG 1 cut(s) 1636
PleI GAGTC 3 cut(s) 310, 1908, 2162
PpsI GAGTC 3 cut(s) 310, 1908, 2162
PpuMI RGGWCCY 2 cut(s) 1501, 2183
PshBI ATTAAT 1 cut(s) 2073
Psp1406I AACGTT 1 cut(s) 1741
Psp5II RGGWCCY 2 cut(s) 1501, 2183
PspEI GGTNACC 1 cut(s) 1415
PspFI CCCAGC 3 cut(s) 371, 585, 1079
PspN4I GGNNCC 7 cut(s) 598, 1009, 1393, 1502, 1503, 1665, 1861
PspPI GGNCC 9 cut(s) 871, 931, 1007, 1021, 1040, 1136, 1501, 1604, 2183
PspPPI RGGWCCY 2 cut(s) 1501, 2183
PsrI GAACNNNNNNTAC 2 cut(s) 1676, 1708
PsuI RGATCY 4 cut(s) 157, 518, 1391, 1663
PsyI GACNNNGTC 1 cut(s) 645
PvuI CGATCG 1 cut(s) 1636
SalI GTCGAC 1 cut(s) 1302
SapI GCTCTTC 1 cut(s) 1743
SatI GCNGC 4 cut(s) 60, 590, 1374, 1644
Sau96I GGNCC 9 cut(s) 871, 931, 1007, 1021, 1040, 1136, 1501, 1604, 2183
ScaI AGTACT 2 cut(s) 905, 1069
SchI GAGTC 3 cut(s) 310, 1909, 2163
SduI GDGCHC 2 cut(s) 601, 2143
SfaNI GCATC 1 cut(s) 1192
SfcI CTRYAG 2 cut(s) 948, 1483
SinI GGWCC 6 cut(s) 931, 1007, 1040, 1501, 1604, 2183
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SsiI CCGC 8 cut(s) 11, 268, 375, 645, 1002, 1091, 1161, 1644
SspI AATATT 1 cut(s) 1837
SspMI CTAG 8 cut(s) 162, 201, 222, 321, 522, 777, 1445, 2177
StyI CCWWGG 2 cut(s) 320, 934
TaaI ACNGT 1 cut(s) 809
TaiI ACGT 2 cut(s) 249, 1744
TatI WGTACW 4 cut(s) 903, 1067, 1312, 1692
TauI GCSGC 1 cut(s) 1646
TfiI GAWTC 2 cut(s) 966, 1429
TscAI CASTG 1 cut(s) 991
TseFI GTSAC 2 cut(s) 301, 1825
TseI GCWGC 3 cut(s) 59, 589, 1373
Tsp45I GTSAC 2 cut(s) 301, 1825
TspDTI ATGAA 9 cut(s) 197, 778, 1005, 1028, 1343, 1697, 1761, 2036, 2112
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 1 cut(s) 991
Tth111I GACNNNGTC 1 cut(s) 645
Van91I CCANNNNNTGG 2 cut(s) 961, 1601
VpaK11BI GGWCC 6 cut(s) 931, 1007, 1040, 1501, 1604, 2183
VspI ATTAAT 1 cut(s) 2073
XagI CCTNNNNNAGG 1 cut(s) 2148
XapI RAATTY 5 cut(s) 555, 749, 992, 1872, 2043
XbaI TCTAGA 2 cut(s) 221, 521
XceI RCATGY 1 cut(s) 2201
XmaJI CCTAGG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 1303
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 8 cut(s) 162, 201, 222, 321, 522, 777, 1445, 2177
ZrmI AGTACT 2 cut(s) 905, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.