Rmu_sc0016190.1_g000001

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016190.1
OG0000159
Physical Location & Seq
Forward (+)
2561 .. 3673
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016190.1_g000001.1.cds

Sequence Viewer

Length: 1113 bp
atggagtttgcgagcagcattgcagataacgtcttgtgtaggctagcttcacatgcttcccaagagatctctttggcatggggtgcccaacttcagctcaccaagctcaacaagaccttatctaccatcaaactagtgcttgaagatgcagagaagaagcaagtgaggaatccactaatcactcgttggttgggaaatctcaaagatgtttgccatgacgttgatgatgtcttggacgaactggaattccaaaagttgcgtttgaaagtgggggtcgacaactgcaggaagatcaaaggaaaggtacgccaatttttttcccgatggaatccagtagtgtttaacttcaaaatgggacataaagtggaagagattagagaaagactagctgaaattgataatgaaaggagagagtttgctctctttgaggttgctaagatagctgaagatcatcgtgcgccccaagggatgcacgataataaaagagagactgactctttagtggaggccttagatgttattgggagagatgatgataaaaaacagattatcagccatctcttaaataacactgatatctctactgaggagaatatttctgttatttccatccttgggttaggagggttgggaaagacaactcttgctaaattagtgtataatgataggatggtagaggagaattttcagataaaaatgtggatatgcgtctcagaaaactttgatatccaatcattaattcgcggcattattagtgctgcaattaaacaaaaatgtgaggatgaaagtttggaccttatgaaaagaagattgcaagatactttgcgaggtagaagatttttgttagtgttggatgatgtctgggatacggagctgattggaataacgattgaaaaatggaatgatctaaaaggcttgttaaatgtgggagctaatggaagtaaaatcatcataacaacacgaaatagatcagttgctttacttgtgaatcccttatgcatgcattctttagaatgtcttccccacaaagactgcatgtcattgtttatcaaaagggcatttaagaaaggagaggatggttgcgtgtcagagatgatgacatgtggagtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

370

Amino Acids

42.18

Weight (kDa)

6.48

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 744
AciI CCGC 1 cut(s) 744
AcsI RAATTY 2 cut(s) 245, 682
AcuI CTGAAG 2 cut(s) 77, 465
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 615
AflIII ACRYGT 1 cut(s) 1100
AgsI TTSAA 4 cut(s) 143, 265, 349, 893
AhdI GACNNNNNGTC 1 cut(s) 1036
AhlI ACTAGT 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 723, 755
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 7 cut(s) 47, 97, 106, 389, 443, 874, 932
AluI AGCT 7 cut(s) 47, 97, 106, 389, 443, 874, 932
Alw26I GTCTC 2 cut(s) 482, 715
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 15, 758
ApoI RAATTY 2 cut(s) 245, 682
AseI ATTAAT 1 cut(s) 737
Asp700I GAANNNNTTC 1 cut(s) 1017
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 793
AsuHPI GGTGA 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 31, 63
BbsI GAAGAC 1 cut(s) 1010
BbvI GCAGC 2 cut(s) 27, 745
BccI CCATC 6 cut(s) 134, 318, 564, 617, 664, 1070
BciVI GTATCC 1 cut(s) 859
BcoDI GTCTC 2 cut(s) 482, 715
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 3 cut(s) 44, 134, 386
BfmI CTRYAG 1 cut(s) 283
BfuI GTATCC 1 cut(s) 859
BglII AGATCT 1 cut(s) 66
BisI GCNGC 3 cut(s) 16, 745, 759
BlsI GCNGC 3 cut(s) 17, 746, 760
Bme18I GGWCC 1 cut(s) 793
BmeRI GACNNNNNGTC 1 cut(s) 1036
BmgT120I GGNCC 1 cut(s) 793
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 2 cut(s) 136, 459
BmtI GCTAGC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 1010
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BsaJI CCNNGG 2 cut(s) 463, 613
Bsc4I CCNNNNNNNGG 1 cut(s) 615
Bse1I ACTGG 2 cut(s) 246, 332
Bse3DI GCAATG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 463, 613
BseGI GGATG 6 cut(s) 474, 609, 675, 787, 859, 1081
BseLI CCNNNNNNNGG 1 cut(s) 615
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 576, 726
BseNI ACTGG 2 cut(s) 246, 332
BseRI GAGGAG 2 cut(s) 602, 692
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 2 cut(s) 27, 745
Bsh1236I CGCG 1 cut(s) 744
BshFI GGCC 1 cut(s) 509
BshNI GGYRCC 1 cut(s) 83
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 615
BsmAI GTCTC 2 cut(s) 482, 715
BsmBI CGTCTC 1 cut(s) 715
BsmFI GGGAC 1 cut(s) 369
BsmI GAATGC 1 cut(s) 1003
BsnI GGCC 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 5 cut(s) 66, 291, 448, 904, 968
BspACI CCGC 1 cut(s) 744
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 2 cut(s) 577, 725
BspFNI CGCG 1 cut(s) 744
BspLI GGNNCC 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 287
BspOI GCTAGC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 2 cut(s) 246, 332
BssECI CCNNGG 2 cut(s) 463, 613
BssMI GATC 5 cut(s) 66, 291, 448, 904, 968
BssT1I CCWWGG 2 cut(s) 463, 613
Bst6I CTCTTC 1 cut(s) 363
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 13, 45, 1001
BstDEI CTNAG 4 cut(s) 435, 511, 585, 712
BstF5I GGATG 6 cut(s) 474, 609, 675, 787, 859, 1081
BstFNI CGCG 1 cut(s) 744
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 5 cut(s) 69, 294, 451, 907, 971
BstMAI GTCTC 2 cut(s) 482, 715
BstMBI GATC 5 cut(s) 66, 291, 448, 904, 968
BstMWI GCNNNNNNNGC 4 cut(s) 53, 83, 103, 440
BstNSI RCATGY 4 cut(s) 56, 1003, 1039, 1104
BstSFI CTRYAG 1 cut(s) 283
BstSLI GKGCMC 1 cut(s) 88
BstUI CGCG 1 cut(s) 744
BstV1I GCAGC 2 cut(s) 27, 745
BstV2I GAAGAC 1 cut(s) 1010
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuI GTATCC 1 cut(s) 859
BsuRI GGCC 1 cut(s) 509
BtsCI GGATG 6 cut(s) 474, 609, 675, 787, 859, 1081
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 3 cut(s) 13, 45, 1001
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 793
CseI GACGC 1 cut(s) 697
Csp6I GTAC 1 cut(s) 305
CviAII CATG 6 cut(s) 53, 78, 215, 1000, 1036, 1101
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 4 cut(s) 435, 511, 585, 712
DpnI GATC 5 cut(s) 68, 293, 450, 906, 970
DpnII GATC 5 cut(s) 66, 291, 448, 904, 968
DriI GACNNNNNGTC 1 cut(s) 1036
Eam1104I CTCTTC 1 cut(s) 363
Eam1105I GACNNNNNGTC 1 cut(s) 1036
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 2 cut(s) 463, 613
Eco147I AGGCCT 1 cut(s) 509
Eco32I GATATC 2 cut(s) 577, 727
Eco47I GGWCC 1 cut(s) 793
Eco57I CTGAAG 2 cut(s) 77, 465
EcoRI GAATTC 1 cut(s) 245
EcoRV GATATC 2 cut(s) 577, 727
EcoT14I CCWWGG 2 cut(s) 463, 613
EcoT22I ATGCAT 2 cut(s) 1001, 1005
ErhI CCWWGG 2 cut(s) 463, 613
Esp3I CGTCTC 1 cut(s) 715
FaeI CATG 6 cut(s) 56, 81, 218, 1003, 1039, 1104
FaqI GGGAC 1 cut(s) 369
FatI CATG 6 cut(s) 52, 77, 214, 999, 1035, 1100
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 16, 745, 759
FokI GGATG 6 cut(s) 481, 596, 682, 794, 866, 1088
Fsp4HI GCNGC 3 cut(s) 16, 745, 759
FspBI CTAG 3 cut(s) 44, 134, 386
GlaI GCGC 1 cut(s) 459
GluI GCNGC 3 cut(s) 16, 745, 759
HaeIII GGCC 1 cut(s) 509
HgaI GACGC 1 cut(s) 697
HhaI GCGC 1 cut(s) 460
Hin1II CATG 6 cut(s) 56, 81, 218, 1003, 1039, 1104
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 4 cut(s) 169, 328, 494, 988
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 3 cut(s) 690, 715, 1090
Hpy188III TCNNGA 1 cut(s) 321
Hpy8I GTNNAC 1 cut(s) 277
HpyCH4IV ACGT 2 cut(s) 30, 219
HpyCH4V TGCA 9 cut(s) 23, 149, 285, 472, 761, 814, 999, 1003, 1035
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 83, 103, 440
HpyF3I CTNAG 4 cut(s) 435, 511, 585, 712
HpySE526I ACGT 2 cut(s) 30, 219
Hsp92II CATG 6 cut(s) 56, 81, 218, 1003, 1039, 1104
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 5 cut(s) 66, 291, 448, 904, 968
LmnI GCTCC 2 cut(s) 871, 929
LpnPI CCDG 4 cut(s) 227, 271, 345, 847
Lsp1109I GCAGC 2 cut(s) 27, 745
LweI GCATC 2 cut(s) 136, 459
MaeI CTAG 3 cut(s) 44, 134, 386
MaeII ACGT 2 cut(s) 30, 219
MalI GATC 5 cut(s) 68, 293, 450, 906, 970
MboI GATC 5 cut(s) 66, 291, 448, 904, 968
MboII GAAGA 8 cut(s) 155, 166, 301, 380, 458, 819, 846, 1010
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 7 cut(s) 245, 311, 393, 650, 682, 738, 762
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 831
MnlI CCTC 9 cut(s) 159, 421, 499, 580, 617, 670, 772, 821, 1066
Mph1103I ATGCAT 2 cut(s) 1001, 1005
MroXI GAANNNNTTC 1 cut(s) 1017
MseI TTAA 6 cut(s) 342, 563, 737, 765, 920, 1062
Mva1269I GAATGC 1 cut(s) 1003
MvnI CGCG 1 cut(s) 744
MwoI GCNNNNNNNGC 4 cut(s) 53, 83, 103, 440
NdeII GATC 5 cut(s) 66, 291, 448, 904, 968
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 6 cut(s) 56, 81, 218, 1003, 1039, 1104
NlaIV GGNNCC 1 cut(s) 85
NsiI ATGCAT 2 cut(s) 1001, 1005
NspI RCATGY 4 cut(s) 56, 1003, 1039, 1104
PaeI GCATGC 1 cut(s) 1003
PceI AGGCCT 1 cut(s) 509
PciI ACATGT 1 cut(s) 1100
PctI GAATGC 1 cut(s) 1003
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 3 cut(s) 169, 328, 988
PkrI GCNGC 3 cut(s) 17, 746, 760
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
PscI ACATGT 1 cut(s) 1100
PshBI ATTAAT 1 cut(s) 737
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 793
PstI CTGCAG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 6 cut(s) 342, 563, 737, 765, 920, 1062
SatI GCNGC 3 cut(s) 16, 745, 759
Sau3AI GATC 5 cut(s) 66, 291, 448, 904, 968
Sau96I GGNCC 1 cut(s) 793
SchI GAGTC 1 cut(s) 488
SduI GDGCHC 1 cut(s) 88
SfaNI GCATC 2 cut(s) 136, 459
SfcI CTRYAG 1 cut(s) 283
SinI GGWCC 1 cut(s) 793
SpeI ACTAGT 1 cut(s) 133
SphI GCATGC 1 cut(s) 1003
Sse9I AATT 7 cut(s) 245, 311, 393, 650, 682, 738, 762
SseBI AGGCCT 1 cut(s) 509
SsiI CCGC 1 cut(s) 744
SspI AATATT 1 cut(s) 595
SspMI CTAG 3 cut(s) 44, 134, 386
StuI AGGCCT 1 cut(s) 509
StyI CCWWGG 2 cut(s) 463, 613
TaiI ACGT 2 cut(s) 33, 222
TaqI TCGA 1 cut(s) 276
TasI AATT 7 cut(s) 245, 311, 393, 650, 682, 738, 762
TauI GCSGC 1 cut(s) 747
TfiI GAWTC 3 cut(s) 169, 328, 988
Tru1I TTAA 6 cut(s) 342, 563, 737, 765, 920, 1062
Tru9I TTAA 6 cut(s) 342, 563, 737, 765, 920, 1062
TscAI CASTG 1 cut(s) 577
TseI GCWGC 2 cut(s) 15, 758
TspDTI ATGAA 3 cut(s) 417, 798, 815
TspGWI ACGGA 1 cut(s) 884
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 793
VspI ATTAAT 1 cut(s) 737
XapI RAATTY 2 cut(s) 245, 682
XceI RCATGY 4 cut(s) 56, 1003, 1039, 1104
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 3 cut(s) 44, 134, 386
Zsp2I ATGCAT 2 cut(s) 1001, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.