RchiOBHm_Chr2g0117271

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
29527020 .. 29531491
4472 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49023

Sequence Viewer

Length: 2658 bp
ATGGAGTTTGCCAGTAGCATTGCCGATAACGTCTTGTGTAGCTTAGCTTCACATGCTTCCCAAGAGATCTCCTTGGCATGGGGCGCCCAACTTGAGCTCACCAAGCTCAACAAGACCTTATCTGTCATCAAACTAGTGCTCGAGGATGCAGAGAAGAAGCAAGTGAGAGATCCCCTAATCACTCGTTGGTTAGGAAATCTCAAAGATGTTTGTCATGACGTTGATGATGTCTTAGACGAACTGGACTTCCAAAAGTTGCGATTGAAAGTGGAGGTCGACAACTATGGGAAGATCAAAGGAAAGGTACGCCGATTTTTTTCCCGATGGAATCCAGTAGTGTTTAACTTCAAAATGAGACATAAAGTGATAGAGATTAGAGAAAGACTAGTTGACATTGATAATGAAAAGAGACAGTTTGCTCTCCTTGAGTTTGTTAAGAGAGCTGAAGATCCTCGTGCGCCCCAACAAGTGCACGATGACAGGAGGATGACTACCTCTAAAGTTGAGGCTTCAAATGTTATTGGAAGAGATGATGATAAAAAACAGATTATCAAGCATCTCTTGAATGACACTGATTTCTCCAATGAGGAGAATGTTTCTGTTGTTTCCATAATTGGGTTAGGAGGGTTGGGGAAAACAACACTTGCTAAATTGGTGTACAATGATAAAATAGTAGAAGAAAATTTTGAGACAAAGATGTGGATATGCGTCTCAGACAACTTTGATATTCAAACATTAATTCGAGGTATTATTAATGCTGCAAATGGACCAAAATGTGAGGATGAAAGTTTGGATCTTATGGAAAGAAAGTTGCAAGATACTCTTAGAGGTAAAAAAATTTTATTAGTGTTGGACGATATCTGGGATTCAGAGTCGATTGGAGTAACAATTGAAAAATGGACTGATTTAAAAACTTTGTTAAATGTGGGCGCTAATGGAAGCAAAATCATTATAACAACACGAAATAAATCAGTTGCTTTACTTGTGAGTCCCTTATACATGCATTATTTAGAGGGTCTTTCCCACAAAGATTGCATGTCCTTGTTCATCCAAAGGGCATTTAAAAGAGGAGAGGAGCAGCGGTATCAACATTTGATAGAAATTGGAGAGGATATTGTGAAGAAATGTGGAGGAGTTCCTTTAGCAGTTGCTACTGTAGGGAGCATGCTCTATTTGAATACAGATGAACACCGATGGTCGAGTGTCAGGGATGATGACATGTGGAGTATAGGGAATGACAATATTCTACCTGCACTCAAATTGAGCTATGATGCATTGCCACAACACTTGAAACCGTGTTTTGCATTTTGTTCACTTTTCCCAAAGGATTATCAATTCAACAGTGGCTTCTTGGTTCCACTATGGAGAGCACAAGGATACCTCAAAGCATGTAAGAAAAATGAAGATTTTGAGCGTATGAGTATAGACTATATAAGACAGTTTTGCTCTAGATCTTTGTTTCAGGTTGAGACAGATCTCAAAACAGCCATATTTTTTAAAATACATGATCTAGTTCATGATTTAGCAATTTCAGTGGCACAAGTAGAGTACTCCACTGTCAATTTTCGTCCCTCTAGTGCTTTTGAAATGGTTCGACATGTGTCAATATCCAAAAATGACTTGCTTGGAGAAAAGGCACAACTTCCCGATTTCATGCTCAAGTCAAACAAATTACGAACCATTTTAATTCCTAGAGAAGATTGCCAGATGAATCAACGTTTTGTGAAGACATGCATCTCGAGACTCAAATGTATGCGGGTGCTAGATCTCAATGGGTCGCCTCTTGAGGAGTTACCAAGTTCCATTGGTAGTCTGTTTCATTTGAGATTTCTCAACTTGTGTTTTAATAATAAGATAAAAAGGCTTCCCAATTCCATCAGTAAGCTGCTGAATTTGGAGGCTTTGGCCCTTGGGGGTTGTGACGCACTTGAGGAGATACCCAAAGACATATGGAACCTGATCAACCTACGGAGCTTGACGATAACAACACAGCAGACATATTTGCCAAAAGGAATTAGACGCCTCACCTTACTTCAAGTTTTATATTTTAAAGGATGTGTCAATCTTAAATCTTTGGGCGAAGAGATCCAATTCCTCAACAACCTTCGTACACTGGCGATTGCTAGTTGTAATAATTTGGAATGCTTGCCACCAAATATGAAACACATGACCGCTTTACATACTTTGTCTATCGATGATTGCGAGAAGCTTCAGTTGATGAGATCAGGGGAAGGTCCTCAAGTTCTTCGATCATTGATGATCTATAAATCAAGTTTGGAGGCTTTGCCCCATTGGCTTGAAGATTCTGCAGACACTCTACAGAGCATATTAGTTTCTGAATGTCATAATCTCACGGCACTTCCGGAGTTGAAAAACTTCACATTCCTCGAGCAACTACACATTGTAGAATGCCCCAAATTGTTGGCTTTGCCGCAAGGGTTGCATTGCCTTACTGAGTTGAGAGAACTGAACATTGAAGGGTGTCCTGAATTGAGCAAAAGCTGCAAAAGGCAATTAAAAGGTGAGGAGTGGTCAAAGATGGCACGTCAGGTGAAGATTACACTCGACGCTGATGATGAAGAAGATGAAGCCCACAATCGTTTGGCCGACGGTAGGATCGCGTACCCCACAACCCGCCACCGGCGACGACGCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

885

Amino Acids

101.34

Weight (kDa)

7.26

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 93 3.4e-18 Rx N-terminal domain
NB-ARC PF00931 177 - 356 4.4e-31 NB-ARC domain
WHD_DRP PF23559 439 - 509 8.5e-17 Disease resistance protein Winged helix domain
LRR_14 PF23598 577 - 770 2.9e-24 Leucine-rich repeat region
LRR_13 PF23286 585 - 738 6e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_R13L1-DRL21 PF25019 746 - 804 3.1e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 953
Acc36I ACCTGC 1 cut(s) 1258
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 2621
AccIII TCCGGA 1 cut(s) 2362
AciI CCGC 5 cut(s) 1081, 1756, 2172, 2432, 2635
AclI AACGTT 1 cut(s) 1717
AclWI GGATC 5 cut(s) 164, 443, 801, 2080, 2624
AcoI YGGCCR 1 cut(s) 2604
AcsI RAATTY 3 cut(s) 682, 837, 1891
AcuI CTGAAG 2 cut(s) 465, 2195
AcyI GRCGYC 3 cut(s) 84, 2020, 2650
AfaI GTAC 5 cut(s) 306, 659, 1550, 2110, 2624
AfiI CCNNNNNNNGG 4 cut(s) 78, 615, 2613, 2640
AflIII ACRYGT 2 cut(s) 1218, 1597
AhlI ACTAGT 2 cut(s) 133, 385
AjiI CACGTC 1 cut(s) 2546
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
Alw21I GWGCWC 4 cut(s) 99, 141, 474, 1372
Alw26I GTCTC 6 cut(s) 349, 403, 683, 715, 1463, 1735
Alw44I GTGCAC 1 cut(s) 470
AlwI GGATC 5 cut(s) 164, 443, 801, 2080, 2624
Ama87I CYCGRG 3 cut(s) 140, 1738, 2387
Aor13HI TCCGGA 1 cut(s) 2362
AoxI GGCC 2 cut(s) 1905, 2604
ApaLI GTGCAC 1 cut(s) 470
ApeKI GCWGC 4 cut(s) 758, 1078, 1885, 2502
ApoI RAATTY 3 cut(s) 682, 837, 1891
AseI ATTAAT 2 cut(s) 737, 753
Asp700I GAANNNNTTC 2 cut(s) 1590, 2375
AspLEI GCGC 3 cut(s) 86, 460, 932
AspS9I GGNCC 3 cut(s) 767, 1906, 2234
AsuHPI GGTGA 4 cut(s) 91, 2017, 2534, 2563
AvaI CYCGRG 3 cut(s) 140, 1738, 2387
AvaII GGWCC 2 cut(s) 767, 2234
BaeGI GKGCMC 1 cut(s) 474
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 99
BarI GAAGNNNNNNTAC 2 cut(s) 31, 63
BauI CACGAG 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 1733
Bbv12I GWGCWC 4 cut(s) 99, 141, 474, 1372
BbvI GCAGC 4 cut(s) 745, 1090, 1872, 2489
BccI CCATC 4 cut(s) 318, 1188, 1883, 2533
BceAI ACGGC 2 cut(s) 2370, 2637
BciVI GTATCC 1 cut(s) 1370
BclI TGATCA 1 cut(s) 1959
BcoDI GTCTC 6 cut(s) 349, 403, 683, 715, 1463, 1735
BcuI ACTAGT 2 cut(s) 133, 385
BfaI CTAG 8 cut(s) 134, 386, 1449, 1511, 1575, 1692, 1763, 2124
BfmI CTRYAG 3 cut(s) 1155, 2307, 2318
BfoI RGCGCY 2 cut(s) 87, 933
BfuAI ACCTGC 1 cut(s) 1258
BfuI GTATCC 1 cut(s) 1370
BglI GCCNNNNNGGC 1 cut(s) 2293
BglII AGATCT 4 cut(s) 66, 1451, 1474, 1765
BisI GCNGC 5 cut(s) 759, 1079, 1886, 2432, 2503
BlpI GCTNAGC 1 cut(s) 43
BlsI GCNGC 5 cut(s) 760, 1080, 1887, 2433, 2504
BmcAI AGTACT 1 cut(s) 1550
Bme18I GGWCC 2 cut(s) 767, 2234
BmeT110I CYCGRG 3 cut(s) 140, 1738, 2387
BmgBI CACGTC 1 cut(s) 2546
BmgT120I GGNCC 3 cut(s) 767, 1906, 2234
BmiI GGNNCC 3 cut(s) 85, 1356, 1955
BmsI GCATC 4 cut(s) 136, 565, 1261, 1743
BoxI GACNNNNGTC 1 cut(s) 1600
BpiI GAAGAC 1 cut(s) 1733
Bpu1102I GCTNAGC 1 cut(s) 43
BpuEI CTTGAG 6 cut(s) 113, 446, 1643, 1805, 1949, 2223
Bsa29I ATCGAT 1 cut(s) 2193
BsaHI GRCGYC 3 cut(s) 84, 2020, 2650
BsaJI CCNNGG 2 cut(s) 72, 1909
BsaWI WCCGGW 1 cut(s) 2362
BsaXI ACNNNNNCTCC 2 cut(s) 1067, 1097
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 615, 2613, 2640
Bse118I RCCGGY 1 cut(s) 2640
Bse1I ACTGG 4 cut(s) 12, 246, 332, 2118
Bse3DI GCAATG 3 cut(s) 18, 1274, 2443
BseAI TCCGGA 1 cut(s) 2362
BseCI ATCGAT 1 cut(s) 2193
BseDI CCNNGG 2 cut(s) 72, 1909
BseGI GGATG 6 cut(s) 151, 492, 787, 1047, 1216, 2060
BseLI CCNNNNNNNGG 4 cut(s) 78, 615, 2613, 2640
BseMI GCAATG 3 cut(s) 18, 1274, 2443
BseMII CTCAG 2 cut(s) 726, 2445
BseNI ACTGG 4 cut(s) 12, 246, 332, 2118
BseRI GAGGAG 7 cut(s) 602, 1083, 1088, 1146, 1802, 1946, 2540
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 4 cut(s) 745, 1090, 1872, 2489
BsgI GTGCAG 1 cut(s) 1236
Bsh1236I CGCG 1 cut(s) 2621
BshFI GGCC 2 cut(s) 1907, 2606
BshNI GGYRCC 1 cut(s) 83
BshVI ATCGAT 1 cut(s) 2193
BsiHKAI GWGCWC 4 cut(s) 99, 141, 474, 1372
BsiHKCI CYCGRG 3 cut(s) 140, 1738, 2387
BsiSI CCGG 2 cut(s) 2363, 2641
BslFI GGGAC 2 cut(s) 975, 1554
BslI CCNNNNNNNGG 4 cut(s) 78, 615, 2613, 2640
BsmAI GTCTC 6 cut(s) 349, 403, 683, 715, 1463, 1735
BsmBI CGTCTC 1 cut(s) 715
BsmFI GGGAC 2 cut(s) 975, 1554
BsmI GAATGC 2 cut(s) 2147, 2414
BsnI GGCC 2 cut(s) 1907, 2606
BsoBI CYCGRG 3 cut(s) 140, 1738, 2387
Bsp1286I GDGCHC 4 cut(s) 99, 141, 474, 1372
Bsp13I TCCGGA 1 cut(s) 2362
Bsp1407I TGTACA 1 cut(s) 657
Bsp1720I GCTNAGC 1 cut(s) 43
BspACI CCGC 5 cut(s) 1081, 1756, 2172, 2432, 2635
BspANI GGCC 2 cut(s) 1907, 2606
BspCNI CTCAG 2 cut(s) 725, 2446
BspDI ATCGAT 1 cut(s) 2193
BspEI TCCGGA 1 cut(s) 2362
BspFNI CGCG 1 cut(s) 2621
BspHI TCATGA 2 cut(s) 214, 1516
BspLI GGNNCC 3 cut(s) 85, 1356, 1955
BspMAI CTGCAG 1 cut(s) 2311
BspMI ACCTGC 1 cut(s) 1258
BspPI GGATC 5 cut(s) 164, 443, 801, 2080, 2624
BspT107I GGYRCC 1 cut(s) 83
BsrDI GCAATG 3 cut(s) 18, 1274, 2443
BsrFI RCCGGY 1 cut(s) 2640
BsrGI TGTACA 1 cut(s) 657
BsrI ACTGG 4 cut(s) 12, 246, 332, 2118
BssAI RCCGGY 1 cut(s) 2640
BssECI CCNNGG 2 cut(s) 72, 1909
BssNI GRCGYC 3 cut(s) 84, 2020, 2650
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 72, 1909
Bst2BI CACGAG 1 cut(s) 453
Bst4CI ACNGT 7 cut(s) 414, 1156, 1296, 1343, 1440, 1558, 2612
Bst6I CTCTTC 2 cut(s) 520, 2076
BstACI GRCGYC 3 cut(s) 84, 2020, 2650
BstAPI GCANNNNNTGC 2 cut(s) 2440, 2502
BstAUI TGTACA 1 cut(s) 657
BstC8I GCNNGC 2 cut(s) 1166, 2147
BstDEI CTNAG 5 cut(s) 43, 232, 712, 824, 2454
BstF5I GGATG 6 cut(s) 151, 492, 787, 1047, 1216, 2060
BstFNI CGCG 1 cut(s) 2621
BstH2I RGCGCY 2 cut(s) 87, 933
BstHHI GCGC 3 cut(s) 86, 460, 932
BstMAI GTCTC 6 cut(s) 349, 403, 683, 715, 1463, 1735
BstMWI GCNNNNNNNGC 6 cut(s) 53, 83, 103, 2293, 2440, 2502
BstNSI RCATGY 8 cut(s) 56, 1003, 1039, 1168, 1222, 1392, 1601, 1734
BstPAI GACNNNNGTC 1 cut(s) 1600
BstSFI CTRYAG 3 cut(s) 1155, 2307, 2318
BstSLI GKGCMC 1 cut(s) 474
BstUI CGCG 1 cut(s) 2621
BstV1I GCAGC 4 cut(s) 745, 1090, 1872, 2489
BstV2I GAAGAC 1 cut(s) 1733
BstX2I RGATCY 8 cut(s) 66, 169, 448, 793, 1451, 1474, 1765, 2085
BstXI CCANNNNNNTGG 1 cut(s) 2422
BstYI RGATCY 8 cut(s) 66, 169, 448, 793, 1451, 1474, 1765, 2085
Bsu15I ATCGAT 1 cut(s) 2193
BsuI GTATCC 1 cut(s) 1370
BsuRI GGCC 2 cut(s) 1907, 2606
BsuTUI ATCGAT 1 cut(s) 2193
BtrI CACGTC 1 cut(s) 2546
BtsCI GGATG 6 cut(s) 151, 492, 787, 1047, 1216, 2060
BtsIMutI CAGTG 5 cut(s) 570, 1348, 1539, 1554, 2111
BveI ACCTGC 1 cut(s) 1258
Cac8I GCNNGC 2 cut(s) 1166, 2147
CciI TCATGA 2 cut(s) 214, 1516
CfoI GCGC 3 cut(s) 86, 460, 932
Cfr10I RCCGGY 1 cut(s) 2640
Cfr13I GGNCC 3 cut(s) 767, 1906, 2234
ClaI ATCGAT 1 cut(s) 2193
CseI GACGC 4 cut(s) 697, 1931, 2028, 2576
Csp6I GTAC 5 cut(s) 305, 658, 1549, 2109, 2623
CspCI CAANNNNNGTGG 6 cut(s) 1013, 1048, 1269, 1304, 1515, 1550
CviQI GTAC 5 cut(s) 305, 658, 1549, 2109, 2623
DdeI CTNAG 5 cut(s) 43, 232, 712, 824, 2454
DinI GGCGCC 1 cut(s) 85
DraI TTTAAA 4 cut(s) 909, 1063, 1498, 2050
EaeI YGGCCR 1 cut(s) 2604
Eam1104I CTCTTC 2 cut(s) 520, 2076
EarI CTCTTC 2 cut(s) 520, 2076
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 72, 1909
Eco24I GRGCYC 1 cut(s) 99
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 2 cut(s) 767, 2234
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 465, 2195
Eco88I CYCGRG 3 cut(s) 140, 1738, 2387
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 2234
EcoRV GATATC 1 cut(s) 859
EcoT14I CCWWGG 2 cut(s) 72, 1909
EcoT22I ATGCAT 3 cut(s) 1005, 1276, 1736
EcoT38I GRGCYC 1 cut(s) 99
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
ErhI CCWWGG 2 cut(s) 72, 1909
Esp3I CGTCTC 1 cut(s) 715
FalI AAGNNNNNCTT 4 cut(s) 545, 577, 807, 839
FaqI GGGAC 2 cut(s) 975, 1554
FauI CCCGC 2 cut(s) 1749, 2642
FauNDI CATATG 1 cut(s) 1949
FbaI TGATCA 1 cut(s) 1959
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 5 cut(s) 759, 1079, 1886, 2432, 2503
FokI GGATG 6 cut(s) 158, 499, 794, 1034, 1223, 2067
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 5 cut(s) 759, 1079, 1886, 2432, 2503
FspBI CTAG 8 cut(s) 134, 386, 1449, 1511, 1575, 1692, 1763, 2124
GlaI GCGC 3 cut(s) 85, 459, 931
GluI GCNGC 5 cut(s) 759, 1079, 1886, 2432, 2503
HaeII RGCGCY 2 cut(s) 87, 933
HaeIII GGCC 2 cut(s) 1907, 2606
HapII CCGG 2 cut(s) 2363, 2641
HgaI GACGC 4 cut(s) 697, 1931, 2028, 2576
HhaI GCGC 3 cut(s) 86, 460, 932
Hin1I GRCGYC 3 cut(s) 84, 2020, 2650
Hin6I GCGC 3 cut(s) 84, 458, 930
HinP1I GCGC 3 cut(s) 84, 458, 930
HincII GTYRAC 2 cut(s) 277, 391
HindII GTYRAC 2 cut(s) 277, 391
HindIII AAGCTT 1 cut(s) 2207
HinfI GANTC 7 cut(s) 328, 866, 872, 988, 1711, 1743, 2303
HpaII CCGG 2 cut(s) 2363, 2641
HphI GGTGA 4 cut(s) 91, 2017, 2534, 2563
Hpy166II GTNNAC 6 cut(s) 277, 391, 472, 658, 1313, 2111
Hpy188I TCNGA 3 cut(s) 715, 871, 2338
Hpy8I GTNNAC 6 cut(s) 277, 391, 472, 658, 1313, 2111
Hpy99I CGWCG 4 cut(s) 2570, 2612, 2649, 2652
HpyAV CCTTC 3 cut(s) 2114, 2225, 2471
HpyCH4III ACNGT 7 cut(s) 414, 1156, 1296, 1343, 1440, 1558, 2612
HpyCH4IV ACGT 4 cut(s) 30, 219, 1717, 2545
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 83, 103, 2293, 2440, 2502
HpyF3I CTNAG 5 cut(s) 43, 232, 712, 824, 2454
HpySE526I ACGT 4 cut(s) 30, 219, 1717, 2545
Hsp92I GRCGYC 3 cut(s) 84, 2020, 2650
HspAI GCGC 3 cut(s) 84, 458, 930
KasI GGCGCC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 2362
Ksp22I TGATCA 1 cut(s) 1959
LmnI GCTCC 3 cut(s) 1075, 1161, 1971
Lsp1109I GCAGC 4 cut(s) 745, 1090, 1872, 2489
LweI GCATC 4 cut(s) 136, 565, 1261, 1743
MaeI CTAG 8 cut(s) 134, 386, 1449, 1511, 1575, 1692, 1763, 2124
MaeII ACGT 4 cut(s) 30, 219, 1717, 2545
MaeIII GTNAC 3 cut(s) 883, 1791, 1919
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 8 cut(s) 66, 169, 448, 793, 1451, 1474, 1765, 2085
MhlI GDGCHC 4 cut(s) 99, 141, 474, 1372
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 3 cut(s) 881, 997, 1737
MmeI TCCRAC 1 cut(s) 831
Mph1103I ATGCAT 3 cut(s) 1005, 1276, 1736
MroI TCCGGA 1 cut(s) 2362
MroXI GAANNNNTTC 2 cut(s) 1590, 2375
MspA1I CMGCKG 1 cut(s) 1081
MspI CCGG 2 cut(s) 2363, 2641
MunI CAATTG 1 cut(s) 888
Mva1269I GAATGC 2 cut(s) 2147, 2414
MvnI CGCG 1 cut(s) 2621
MwoI GCNNNNNNNGC 6 cut(s) 53, 83, 103, 2293, 2440, 2502
NarI GGCGCC 1 cut(s) 84
NdeI CATATG 1 cut(s) 1949
NlaIV GGNNCC 3 cut(s) 85, 1356, 1955
NmuCI GTSAC 1 cut(s) 1919
NsiI ATGCAT 3 cut(s) 1005, 1276, 1736
NspI RCATGY 8 cut(s) 56, 1003, 1039, 1168, 1222, 1392, 1601, 1734
PaeI GCATGC 1 cut(s) 1168
PaeR7I CTCGAG 3 cut(s) 140, 1738, 2387
PagI TCATGA 2 cut(s) 214, 1516
PciI ACATGT 2 cut(s) 1218, 1597
PcsI WCGNNNNNNNCGW 1 cut(s) 2199
PctI GAATGC 2 cut(s) 2147, 2414
PdmI GAANNNNTTC 2 cut(s) 1590, 2375
PfeI GAWTC 4 cut(s) 328, 866, 1711, 2303
PkrI GCNGC 5 cut(s) 760, 1080, 1887, 2433, 2504
PleI GAGTC 3 cut(s) 880, 996, 1737
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 3 cut(s) 880, 996, 1737
PpuMI RGGWCCY 1 cut(s) 2234
PscI ACATGT 2 cut(s) 1218, 1597
PshAI GACNNNNGTC 1 cut(s) 1600
PshBI ATTAAT 2 cut(s) 737, 753
PsiI TTATAA 1 cut(s) 953
Psp124BI GAGCTC 1 cut(s) 99
Psp1406I AACGTT 1 cut(s) 1717
Psp5II RGGWCCY 1 cut(s) 2234
PspN4I GGNNCC 3 cut(s) 85, 1356, 1955
PspPI GGNCC 3 cut(s) 767, 1906, 2234
PspPPI RGGWCCY 1 cut(s) 2234
PspXI VCTCGAGB 2 cut(s) 140, 2387
PstI CTGCAG 1 cut(s) 2311
PsuI RGATCY 8 cut(s) 66, 169, 448, 793, 1451, 1474, 1765, 2085
RsaI GTAC 5 cut(s) 306, 659, 1550, 2110, 2624
RsaNI GTAC 5 cut(s) 305, 658, 1549, 2109, 2623
SacI GAGCTC 1 cut(s) 99
SalI GTCGAC 1 cut(s) 275
SatI GCNGC 5 cut(s) 759, 1079, 1886, 2432, 2503
Sau96I GGNCC 3 cut(s) 767, 1906, 2234
ScaI AGTACT 1 cut(s) 1550
SchI GAGTC 3 cut(s) 881, 997, 1737
SduI GDGCHC 4 cut(s) 99, 141, 474, 1372
SfaNI GCATC 4 cut(s) 136, 565, 1261, 1743
SfcI CTRYAG 3 cut(s) 1155, 2307, 2318
SfoI GGCGCC 1 cut(s) 85
Sfr274I CTCGAG 3 cut(s) 140, 1738, 2387
SgrAI CRCCGGYG 1 cut(s) 2640
SinI GGWCC 2 cut(s) 767, 2234
SlaI CTCGAG 3 cut(s) 140, 1738, 2387
SmlI CTYRAG 9 cut(s) 92, 140, 425, 1658, 1738, 1784, 1928, 2238, 2387
SmoI CTYRAG 9 cut(s) 92, 140, 425, 1658, 1738, 1784, 1928, 2238, 2387
SpeI ACTAGT 2 cut(s) 133, 385
SphI GCATGC 1 cut(s) 1168
SsiI CCGC 5 cut(s) 1081, 1756, 2172, 2432, 2635
SspDI GGCGCC 1 cut(s) 83
SspI AATATT 1 cut(s) 1243
SspMI CTAG 8 cut(s) 134, 386, 1449, 1511, 1575, 1692, 1763, 2124
SstI GAGCTC 1 cut(s) 99
StyI CCWWGG 2 cut(s) 72, 1909
TaaI ACNGT 7 cut(s) 414, 1156, 1296, 1343, 1440, 1558, 2612
TaiI ACGT 4 cut(s) 33, 222, 1720, 2548
TatI WGTACW 2 cut(s) 657, 1548
TauI GCSGC 1 cut(s) 2434
TfiI GAWTC 4 cut(s) 328, 866, 1711, 2303
TscAI CASTG 5 cut(s) 577, 1348, 1539, 1561, 2118
TseFI GTSAC 1 cut(s) 1919
TseI GCWGC 4 cut(s) 758, 1078, 1885, 2502
Tsp45I GTSAC 1 cut(s) 1919
TspGWI ACGGA 1 cut(s) 1984
TspRI CASTG 5 cut(s) 577, 1348, 1539, 1561, 2118
VneI GTGCAC 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 767, 2234
VspI ATTAAT 2 cut(s) 737, 753
XapI RAATTY 3 cut(s) 682, 837, 1891
XbaI TCTAGA 1 cut(s) 1448
XceI RCATGY 8 cut(s) 56, 1003, 1039, 1168, 1222, 1392, 1601, 1734
XhoI CTCGAG 3 cut(s) 140, 1738, 2387
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 2 cut(s) 1590, 2375
XspI CTAG 8 cut(s) 134, 386, 1449, 1511, 1575, 1692, 1763, 2124
ZrmI AGTACT 1 cut(s) 1550
Zsp2I ATGCAT 3 cut(s) 1005, 1276, 1736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.