Rmu_sc0005792.1_g000003

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005792.1
Physical Location & Seq
Reverse (-)
7810 .. 11638
3829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005792.1_g000003.1.cds

Sequence Viewer

Length: 2445 bp
atgggacgtcaagtgaaagagatcagagaaagactggttgaaattgataatgaaaagagacaatttggtctccttaagtttgctaaggtagctgaggatcctcgtttcctccaagggatgcacgataataagagagagactgactctttggtggaggcttcagatgttattgggagagatgatgataaaaaacagattattagccatctcttaaataatactaatatctctagtgaggagaatgtttctgttatttccatccttgggttaggagggttggggaagacaactctagctaaattggtgtataatgatagcatagtagaggagaattttgagatgaaaatgtggatatgcgtctcagaaaactttgatatcggaacattaattcgcagcattatcaatgctgcaattaaacaaaaatgtgaggatgaaagtttggaccttatgaagagaagattgcaagatactttgcgaggtagaagatttttgttagtgttggatgatgtctgggatatggagctgattggaataacgattgaaaaatggaatgatctaaaaggcttgttaaatgtgggagctaatggaagtaaaatcatcataacaacacgacatggatcagttgcttcacttgtgaatcccgtatacatgcaccccttagaaggtcttccccacaaagactgcatctccttgttcatcaaaaaggcatttaaaagaggagaggagcagcgctatccacatttgatagaaattggtgaggatattgtgaagaagtgtcgaggagtacctttagcaatagctactgtagggagcatgctctatttgaaaagagatgaacaccaatggtcgagtgtcagagatgatgacatgtggagcataaggaacgacaatattctacctgcactcaaattgagctatgatgcattgccacaacacatgaaaccgtgttttgcattttgttcacttttcccaaaggattatgtattcaacagtggcttgttggttccattgtggatagcacaaggctacctcatgacatctaagaaaaatgaagatttggaacatatgggtgaagactatataagacagttttgctctagatctttgtttcaggtcgagatagatctcaaaacatccatagtttttaaaatacatgatctagttcatgatttagcaatttcagtggcacaagtagagtactccacagtcaattttcgtccctctagtgcttttgaaatggttcgacatgtgtcaatatctaaaattgacttgcttggagaagagacacaacttccccatttcatgctcaagtcaatcaaattacgaaccattttaattcccagagcagattgccagatgaatcaacgttttgtgaaggcatgcatctcgagattcaaatgtgtgcgggtgctagatctcagtgggtggcctcttgaggagctaccaagttccattgatagtttgtttcatttgagatttctcaacttgtctaatagtaggaagataaaaaggcttcccaattccatcagtaagctgttgaatttggagactttgtgccttgtgggttgtgacgcactggaggcgatacccaaagacatagggaacctgatcaacctccggttcctggtgataactacacaacaggcgtatttgccaaaaggaattagacgtctcaccttacttcagactttagcttttgatggatgtgtcaatcttaaatctttgggcgaagagatccaattcctcaacaaccttcgcaaactgtggattggcagttgtaataatttggaatcacatacgttgtttatcgttaattgcgagaagcttcaggtgatgatgagatcaggggaaggtcctcaaggtcttcgatcattgatttcaagtttggaggctttgcccccttggctcattgaagattctgcagacactctacagagcatatggcttggcgaatgtcataatctcacggcacttccggagttgataaagttcacattcctcgagcaactacacattgtagaatgccccaaattgtcggctttgccgcaaaggttgcattgccttactgagttgagaggattggagatttcagggtgtcctgaattgagaaaaagctgcaaaaggcaattaaaaggtgaggagtggtcaaagatggcacgtcaggtgaagattacactcgacgctgatgatgaagaagatgaagccgacaatcgcttggccgacagtagattctcgtaccaggtatctgtcttattgggctacttgttcttattttcagtatccctgtggaggaagaagagggttgctagctacaaggtgtacactgtggaggggaagttgaaagggactcacaggaagagcttccggtggctcaaggagactcgtggtctatggccgcttgcattgggtgagtgttttggggtacagcagctggctgcattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

814

Amino Acids

92.99

Weight (kDa)

8.1

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AatII GACGTC 2 cut(s) 10, 1672
Acc36I ACCTGC 1 cut(s) 907
AccI GTMKAC 1 cut(s) 645
AccIII TCCGGA 1 cut(s) 1975
AciI CCGC 3 cut(s) 1405, 2045, 2396
AclI AACGTT 1 cut(s) 1366
AclWI GGATC 4 cut(s) 92, 105, 625, 1729
AcoI YGGCCR 2 cut(s) 2217, 2393
AcsI RAATTY 2 cut(s) 331, 1540
AcuI CTGAAG 3 cut(s) 144, 1667, 1811
AcyI GRCGYC 2 cut(s) 7, 1669
AfaI GTAC 5 cut(s) 786, 1199, 2237, 2321, 2424
AfeI AGCGCT 1 cut(s) 731
AfiI CCNNNNNNNGG 4 cut(s) 264, 662, 1624, 2289
AflII CTTAAG 1 cut(s) 74
AflIII ACRYGT 2 cut(s) 867, 1246
AhdI GACNNNNNGTC 1 cut(s) 2385
AjiI CACGTC 1 cut(s) 2159
AjnI CCWGG 2 cut(s) 1623, 2238
Alw26I GTCTC 8 cut(s) 52, 74, 131, 364, 1277, 1541, 1676, 2372
AlwI GGATC 4 cut(s) 92, 105, 625, 1729
AlwNI CAGNNNCTG 1 cut(s) 2431
Ama87I CYCGRG 2 cut(s) 1387, 2000
Aor13HI TCCGGA 1 cut(s) 1975
Aor51HI AGCGCT 1 cut(s) 731
AoxI GGCC 3 cut(s) 1427, 2217, 2393
ApeKI GCWGC 6 cut(s) 393, 407, 727, 2115, 2428, 2435
ApoI RAATTY 2 cut(s) 331, 1540
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AseI ATTAAT 1 cut(s) 386
Asp700I GAANNNNTTC 3 cut(s) 666, 1239, 2360
AspLEI GCGC 1 cut(s) 732
AspS9I GGNCC 2 cut(s) 442, 1853
AsuHPI GGTGA 8 cut(s) 767, 1082, 1639, 1666, 1843, 2147, 2176, 2420
AsuNHI GCTAGC 1 cut(s) 2306
AvaI CYCGRG 2 cut(s) 1387, 2000
AvaII GGWCC 2 cut(s) 442, 1853
BamHI GGATCC 1 cut(s) 97
BauI CACGAG 1 cut(s) 2382
BbsI GAAGAC 4 cut(s) 290, 659, 1080, 1856
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 6 cut(s) 394, 405, 739, 2102, 2422, 2440
BccI CCATC 5 cut(s) 213, 266, 1532, 1694, 2146
BceAI ACGGC 1 cut(s) 1983
BcgI CGANNNNNNTGC 2 cut(s) 1368, 1402
BciT130I CCWGG 2 cut(s) 1625, 2240
BciVI GTATCC 1 cut(s) 2290
BclI TGATCA 1 cut(s) 1608
BcoDI GTCTC 8 cut(s) 52, 74, 131, 364, 1277, 1541, 1676, 2372
BfaI CTAG 7 cut(s) 231, 293, 1098, 1160, 1224, 1412, 2307
BfmI CTRYAG 3 cut(s) 804, 1920, 1931
BfoI RGCGCY 1 cut(s) 733
BfrI CTTAAG 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 907
BfuI GTATCC 1 cut(s) 2290
BglI GCCNNNNNGGC 1 cut(s) 1903
BglII AGATCT 3 cut(s) 1100, 1123, 1414
BisI GCNGC 8 cut(s) 394, 408, 728, 2045, 2116, 2396, 2429, 2436
BlsI GCNGC 8 cut(s) 395, 409, 729, 2046, 2117, 2397, 2430, 2437
BmcAI AGTACT 1 cut(s) 1199
Bme1390I CCNGG 2 cut(s) 1625, 2240
Bme18I GGWCC 2 cut(s) 442, 1853
BmeRI GACNNNNNGTC 1 cut(s) 2385
BmeT110I CYCGRG 2 cut(s) 1387, 2000
BmgBI CACGTC 1 cut(s) 2159
BmgT120I GGNCC 2 cut(s) 442, 1853
BmiI GGNNCC 4 cut(s) 99, 1005, 1604, 1622
BmrFI CCNGG 2 cut(s) 1625, 2240
BmsI GCATC 4 cut(s) 108, 693, 910, 1392
BmtI GCTAGC 1 cut(s) 2310
BoxI GACNNNNGTC 1 cut(s) 1249
BpiI GAAGAC 4 cut(s) 290, 659, 1080, 1856
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 1598
Bpu10I CCTNAGC 2 cut(s) 84, 93
BpuEI CTTGAG 4 cut(s) 1292, 1454, 1842, 2357
BsaHI GRCGYC 2 cut(s) 7, 1669
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 112, 262, 1901
BsaWI WCCGGW 3 cut(s) 1617, 1975, 2364
BsaXI ACNNNNNCTCC 6 cut(s) 671, 701, 1538, 1568, 2321, 2351
Bsc4I CCNNNNNNNGG 4 cut(s) 264, 662, 1624, 2289
Bse1I ACTGG 2 cut(s) 39, 1581
Bse3DI GCAATG 2 cut(s) 923, 2056
BseAI TCCGGA 1 cut(s) 1975
BseBI CCWGG 2 cut(s) 1625, 2240
BseDI CCNNGG 3 cut(s) 112, 262, 1901
BseGI GGATG 6 cut(s) 123, 258, 436, 508, 1133, 1709
BseLI CCNNNNNNNGG 4 cut(s) 264, 662, 1624, 2289
BseMI GCAATG 2 cut(s) 923, 2056
BseMII CTCAG 4 cut(s) 84, 375, 1432, 2058
BseNI ACTGG 2 cut(s) 39, 1581
BseRI GAGGAG 7 cut(s) 251, 341, 732, 737, 795, 1451, 2153
BseXI GCAGC 6 cut(s) 394, 405, 739, 2102, 2422, 2440
BsgI GTGCAG 1 cut(s) 885
BshFI GGCC 3 cut(s) 1429, 2219, 2395
BsiHKCI CYCGRG 2 cut(s) 1387, 2000
BsiSI CCGG 3 cut(s) 1618, 1976, 2365
BslFI GGGAC 3 cut(s) 18, 1203, 2359
BslI CCNNNNNNNGG 4 cut(s) 264, 662, 1624, 2289
BsmAI GTCTC 8 cut(s) 52, 74, 131, 364, 1277, 1541, 1676, 2372
BsmBI CGTCTC 2 cut(s) 364, 1676
BsmFI GGGAC 3 cut(s) 18, 1203, 2359
BsmI GAATGC 1 cut(s) 2027
BsnI GGCC 3 cut(s) 1429, 2219, 2395
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 2 cut(s) 1387, 2000
Bsp13I TCCGGA 1 cut(s) 1975
Bsp1407I TGTACA 1 cut(s) 2319
BspACI CCGC 3 cut(s) 1405, 2045, 2396
BspANI GGCC 3 cut(s) 1429, 2219, 2395
BspCNI CTCAG 4 cut(s) 85, 374, 1431, 2059
BspEI TCCGGA 1 cut(s) 1975
BspHI TCATGA 2 cut(s) 1032, 1165
BspLI GGNNCC 4 cut(s) 99, 1005, 1604, 1622
BspMAI CTGCAG 1 cut(s) 1924
BspMI ACCTGC 1 cut(s) 907
BspOI GCTAGC 1 cut(s) 2310
BspPI GGATC 4 cut(s) 92, 105, 625, 1729
BspQI GCTCTTC 1 cut(s) 2351
BspTI CTTAAG 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 923, 2056
BsrGI TGTACA 1 cut(s) 2319
BsrI ACTGG 2 cut(s) 39, 1581
BssECI CCNNGG 3 cut(s) 112, 262, 1901
BssNAI GTATAC 1 cut(s) 646
BssNI GRCGYC 2 cut(s) 7, 1669
BssSI CACGAG 1 cut(s) 2382
BssT1I CCWWGG 3 cut(s) 112, 262, 1901
Bst1107I GTATAC 1 cut(s) 646
Bst2BI CACGAG 1 cut(s) 2382
Bst2UI CCWGG 2 cut(s) 1625, 2240
Bst4CI ACNGT 8 cut(s) 805, 945, 992, 1089, 1207, 1764, 2225, 2326
Bst6I CTCTTC 5 cut(s) 446, 1275, 1725, 2291, 2351
BstACI GRCGYC 2 cut(s) 7, 1669
BstAFI CTTAAG 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 2053
BstAUI TGTACA 1 cut(s) 2319
BstC8I GCNNGC 5 cut(s) 815, 1381, 2308, 2400, 2433
BstDEI CTNAG 7 cut(s) 84, 93, 361, 658, 1041, 1418, 2067
BstF5I GGATG 6 cut(s) 123, 258, 436, 508, 1133, 1709
BstH2I RGCGCY 1 cut(s) 733
BstHHI GCGC 1 cut(s) 732
BstMAI GTCTC 8 cut(s) 52, 74, 131, 364, 1277, 1541, 1676, 2372
BstMWI GCNNNNNNNGC 4 cut(s) 89, 1580, 1903, 2053
BstNI CCWGG 2 cut(s) 1625, 2240
BstNSI RCATGY 5 cut(s) 652, 817, 871, 1250, 1383
BstPAI GACNNNNGTC 1 cut(s) 1249
BstSCI CCNGG 2 cut(s) 1623, 2238
BstSFI CTRYAG 3 cut(s) 804, 1920, 1931
BstV1I GCAGC 6 cut(s) 394, 405, 739, 2102, 2422, 2440
BstV2I GAAGAC 4 cut(s) 290, 659, 1080, 1856
BstX2I RGATCY 5 cut(s) 97, 1100, 1123, 1414, 1734
BstYI RGATCY 5 cut(s) 97, 1100, 1123, 1414, 1734
BstZ17I GTATAC 1 cut(s) 646
BsuI GTATCC 1 cut(s) 2290
BsuRI GGCC 3 cut(s) 1429, 2219, 2395
BtrI CACGTC 1 cut(s) 2159
BtsCI GGATG 6 cut(s) 123, 258, 436, 508, 1133, 1709
BtsIMutI CAGTG 5 cut(s) 997, 1188, 1426, 1574, 2322
BveI ACCTGC 1 cut(s) 907
Cac8I GCNNGC 5 cut(s) 815, 1381, 2308, 2400, 2433
CaiI CAGNNNCTG 1 cut(s) 2431
CciI TCATGA 2 cut(s) 1032, 1165
CfoI GCGC 1 cut(s) 732
Cfr13I GGNCC 2 cut(s) 442, 1853
CseI GACGC 3 cut(s) 346, 1580, 2189
CsiI ACCWGGT 1 cut(s) 2238
Csp6I GTAC 5 cut(s) 785, 1198, 2236, 2320, 2423
CspCI CAANNNNNGTGG 2 cut(s) 1164, 1199
CviQI GTAC 5 cut(s) 785, 1198, 2236, 2320, 2423
DdeI CTNAG 7 cut(s) 84, 93, 361, 658, 1041, 1418, 2067
DraI TTTAAA 2 cut(s) 712, 1147
DrdI GACNNNNNNGTC 1 cut(s) 66
DriI GACNNNNNGTC 1 cut(s) 2385
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 2 cut(s) 2217, 2393
Eam1104I CTCTTC 5 cut(s) 446, 1275, 1725, 2291, 2351
Eam1105I GACNNNNNGTC 1 cut(s) 2385
EarI CTCTTC 5 cut(s) 446, 1275, 1725, 2291, 2351
Eco130I CCWWGG 3 cut(s) 112, 262, 1901
Eco31I GGTCTC 1 cut(s) 74
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 442, 1853
Eco47III AGCGCT 1 cut(s) 731
Eco57I CTGAAG 3 cut(s) 144, 1667, 1811
Eco88I CYCGRG 2 cut(s) 1387, 2000
EcoO109I RGGNCCY 1 cut(s) 1853
EcoRII CCWGG 2 cut(s) 1623, 2238
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 3 cut(s) 112, 262, 1901
EcoT22I ATGCAT 2 cut(s) 925, 1385
ErhI CCWWGG 3 cut(s) 112, 262, 1901
Esp3I CGTCTC 2 cut(s) 364, 1676
FaqI GGGAC 3 cut(s) 18, 1203, 2359
FauI CCCGC 1 cut(s) 1398
FauNDI CATATG 2 cut(s) 1065, 1940
FbaI TGATCA 1 cut(s) 1608
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 8 cut(s) 394, 408, 728, 2045, 2116, 2396, 2429, 2436
FokI GGATG 6 cut(s) 130, 245, 443, 515, 1120, 1716
Fsp4HI GCNGC 8 cut(s) 394, 408, 728, 2045, 2116, 2396, 2429, 2436
FspBI CTAG 7 cut(s) 231, 293, 1098, 1160, 1224, 1412, 2307
GlaI GCGC 1 cut(s) 731
GluI GCNGC 8 cut(s) 394, 408, 728, 2045, 2116, 2396, 2429, 2436
GsuI CTGGAG 1 cut(s) 1598
HaeII RGCGCY 1 cut(s) 733
HaeIII GGCC 3 cut(s) 1429, 2219, 2395
HapII CCGG 3 cut(s) 1618, 1976, 2365
HgaI GACGC 3 cut(s) 346, 1580, 2189
HhaI GCGC 1 cut(s) 732
Hin1I GRCGYC 2 cut(s) 7, 1669
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 1823
HinfI GANTC 9 cut(s) 143, 637, 1360, 1392, 1790, 1916, 2229, 2347, 2380
HpaII CCGG 3 cut(s) 1618, 1976, 2365
HphI GGTGA 8 cut(s) 767, 1082, 1639, 1666, 1843, 2147, 2176, 2420
Hpy166II GTNNAC 5 cut(s) 646, 962, 1992, 2320, 2322
Hpy188I TCNGA 6 cut(s) 26, 163, 364, 380, 857, 1686
Hpy188III TCNNGA 9 cut(s) 1033, 1098, 1117, 1166, 1387, 1389, 1433, 1976, 2099
Hpy8I GTNNAC 5 cut(s) 646, 962, 1992, 2320, 2322
Hpy99I CGWCG 1 cut(s) 2183
HpyAV CCTTC 4 cut(s) 656, 1369, 1763, 1844
HpyCH4III ACNGT 8 cut(s) 805, 945, 992, 1089, 1207, 1764, 2225, 2326
HpyCH4IV ACGT 5 cut(s) 7, 1366, 1669, 1799, 2158
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 1580, 1903, 2053
HpyF3I CTNAG 7 cut(s) 84, 93, 361, 658, 1041, 1418, 2067
HpySE526I ACGT 5 cut(s) 7, 1366, 1669, 1799, 2158
Hsp92I GRCGYC 2 cut(s) 7, 1669
HspAI GCGC 1 cut(s) 730
Kpn2I TCCGGA 1 cut(s) 1975
Ksp22I TGATCA 1 cut(s) 1608
LguI GCTCTTC 1 cut(s) 2351
LmnI GCTCC 6 cut(s) 520, 578, 724, 810, 873, 1438
Lsp1109I GCAGC 6 cut(s) 394, 405, 739, 2102, 2422, 2440
LweI GCATC 4 cut(s) 108, 693, 910, 1392
MabI ACCWGGT 1 cut(s) 2238
MaeI CTAG 7 cut(s) 231, 293, 1098, 1160, 1224, 1412, 2307
MaeII ACGT 5 cut(s) 7, 1366, 1669, 1799, 2158
MaeIII GTNAC 1 cut(s) 1568
MflI RGATCY 5 cut(s) 97, 1100, 1123, 1414, 1734
MlyI GAGTC 3 cut(s) 137, 2341, 2374
MmeI TCCRAC 1 cut(s) 480
Mph1103I ATGCAT 2 cut(s) 925, 1385
MroI TCCGGA 1 cut(s) 1975
MroXI GAANNNNTTC 3 cut(s) 666, 1239, 2360
MslI CAYNNNNRTG 1 cut(s) 1068
MspA1I CMGCKG 1 cut(s) 2431
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 3 cut(s) 1618, 1976, 2365
MspR9I CCNGG 2 cut(s) 1625, 2240
Mva1269I GAATGC 1 cut(s) 2027
MvaI CCWGG 2 cut(s) 1625, 2240
MwoI GCNNNNNNNGC 4 cut(s) 89, 1580, 1903, 2053
NdeI CATATG 2 cut(s) 1065, 1940
NheI GCTAGC 1 cut(s) 2306
NlaIV GGNNCC 4 cut(s) 99, 1005, 1604, 1622
NmuCI GTSAC 1 cut(s) 1568
NsiI ATGCAT 2 cut(s) 925, 1385
NspI RCATGY 5 cut(s) 652, 817, 871, 1250, 1383
PaeI GCATGC 2 cut(s) 817, 1383
PaeR7I CTCGAG 2 cut(s) 1387, 2000
PagI TCATGA 2 cut(s) 1032, 1165
PciI ACATGT 2 cut(s) 867, 1246
PciSI GCTCTTC 1 cut(s) 2351
PcsI WCGNNNNNNNCGW 1 cut(s) 1815
PctI GAATGC 1 cut(s) 2027
PdmI GAANNNNTTC 3 cut(s) 666, 1239, 2360
PfeI GAWTC 6 cut(s) 637, 1360, 1392, 1790, 1916, 2229
PkrI GCNGC 8 cut(s) 395, 409, 729, 2046, 2117, 2397, 2430, 2437
PleI GAGTC 3 cut(s) 137, 2341, 2374
PpsI GAGTC 3 cut(s) 137, 2341, 2374
PpuMI RGGWCCY 1 cut(s) 1853
PscI ACATGT 2 cut(s) 867, 1246
PshAI GACNNNNGTC 1 cut(s) 1249
PshBI ATTAAT 1 cut(s) 386
Psp1406I AACGTT 1 cut(s) 1366
Psp5II RGGWCCY 1 cut(s) 1853
Psp6I CCWGG 2 cut(s) 1623, 2238
PspGI CCWGG 2 cut(s) 1623, 2238
PspN4I GGNNCC 4 cut(s) 99, 1005, 1604, 1622
PspPI GGNCC 2 cut(s) 442, 1853
PspPPI RGGWCCY 1 cut(s) 1853
PspXI VCTCGAGB 1 cut(s) 2000
PstI CTGCAG 1 cut(s) 1924
PstNI CAGNNNCTG 1 cut(s) 2431
PsuI RGATCY 5 cut(s) 97, 1100, 1123, 1414, 1734
PvuII CAGCTG 1 cut(s) 2431
RsaI GTAC 5 cut(s) 786, 1199, 2237, 2321, 2424
RsaNI GTAC 5 cut(s) 785, 1198, 2236, 2320, 2423
RseI CAYNNNNRTG 1 cut(s) 1068
SapI GCTCTTC 1 cut(s) 2351
SatI GCNGC 8 cut(s) 394, 408, 728, 2045, 2116, 2396, 2429, 2436
Sau96I GGNCC 2 cut(s) 442, 1853
ScaI AGTACT 1 cut(s) 1199
SchI GAGTC 3 cut(s) 137, 2341, 2374
ScrFI CCNGG 2 cut(s) 1625, 2240
SexAI ACCWGGT 1 cut(s) 2238
SfaNI GCATC 4 cut(s) 108, 693, 910, 1392
SfcI CTRYAG 3 cut(s) 804, 1920, 1931
Sfr274I CTCGAG 2 cut(s) 1387, 2000
SinI GGWCC 2 cut(s) 442, 1853
SlaI CTCGAG 2 cut(s) 1387, 2000
SmiMI CAYNNNNRTG 1 cut(s) 1068
SmlI CTYRAG 7 cut(s) 74, 1307, 1387, 1433, 1857, 2000, 2372
SmoI CTYRAG 7 cut(s) 74, 1307, 1387, 1433, 1857, 2000, 2372
SphI GCATGC 2 cut(s) 817, 1383
SsiI CCGC 3 cut(s) 1405, 2045, 2396
SspI AATATT 1 cut(s) 892
SspMI CTAG 7 cut(s) 231, 293, 1098, 1160, 1224, 1412, 2307
StyD4I CCNGG 2 cut(s) 1623, 2238
StyI CCWWGG 3 cut(s) 112, 262, 1901
TaaI ACNGT 8 cut(s) 805, 945, 992, 1089, 1207, 1764, 2225, 2326
TaiI ACGT 5 cut(s) 10, 1369, 1672, 1802, 2161
TaqI TCGA 8 cut(s) 778, 848, 1116, 1243, 1388, 1867, 2001, 2178
TatI WGTACW 2 cut(s) 1197, 2319
TauI GCSGC 2 cut(s) 2047, 2398
TfiI GAWTC 6 cut(s) 637, 1360, 1392, 1790, 1916, 2229
TscAI CASTG 5 cut(s) 997, 1188, 1426, 1581, 2329
TseFI GTSAC 1 cut(s) 1568
TseI GCWGC 6 cut(s) 393, 407, 727, 2115, 2428, 2435
Tsp45I GTSAC 1 cut(s) 1568
TspRI CASTG 5 cut(s) 997, 1188, 1426, 1581, 2329
Vha464I CTTAAG 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 442, 1853
VspI ATTAAT 1 cut(s) 386
XapI RAATTY 2 cut(s) 331, 1540
XbaI TCTAGA 1 cut(s) 1097
XceI RCATGY 5 cut(s) 652, 817, 871, 1250, 1383
XhoI CTCGAG 2 cut(s) 1387, 2000
XmiI GTMKAC 1 cut(s) 645
XmnI GAANNNNTTC 3 cut(s) 666, 1239, 2360
XspI CTAG 7 cut(s) 231, 293, 1098, 1160, 1224, 1412, 2307
ZraI GACGTC 2 cut(s) 8, 1670
ZrmI AGTACT 1 cut(s) 1199
Zsp2I ATGCAT 2 cut(s) 925, 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.