Rmu_co8303371.1_g000001

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8303371.1
OG0000159
Physical Location & Seq
Forward (+)
1 .. 900
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8303371.1_g000001.1.cds

Sequence Viewer

Length: 743 bp
gagggttggggaaaacaacacttgctgaattggtgtataatgatagcatggtacaagaaaattttgagaaaaagatgtggatatgcgtctcagacaactttgatattcaagcattaattcaaggtattactaatgctgcaaatggaccaaaatgtgaggatgaaagtttggatcttatggaaagaaagttgcaagatactcttagggctaatggaagcaaaatcatcataacaacacgaaatgaatcagttgctttacttgtgaatcccttatacatgcattctttaaaaggtctttcccacaatgattgcatgtccttgttcatccaaagggcgtttaacataggagaggagcagcgctatcagtatttgatagaaattggagaggatattgtgaagaagtgtggaggacttcctttagcagttgcagctatagggagcatgctctatttgaataaagagcaacgtcattggtctagtgtcagagatgatgacatgtggagtatagggaatgacaatattctacctgcactcaaattgagctatgatgcattgccacaaaagttgaaactatgttttgcatattgttcactttttccaaaggattatgtattcgagtgtgacctattggttccattgtggatatcacaaggctaccttaaaacatgcaagaaaaatgaagatttggaacagatgggtttagagtacgtaaggcagttttgctctagatctttgtttcaagtc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

247

Amino Acids

28.19

Weight (kDa)

5.21

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 534
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 60
AfaI GTAC 2 cut(s) 53, 706
AfeI AGCGCT 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 5 cut(s) 109, 121, 453, 567, 739
AluBI AGCT 2 cut(s) 430, 542
AluI AGCT 2 cut(s) 430, 542
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 179
Aor51HI AGCGCT 1 cut(s) 358
ApeKI GCWGC 3 cut(s) 136, 354, 427
ApoI RAATTY 1 cut(s) 60
AseI ATTAAT 1 cut(s) 115
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 145
BbvI GCAGC 3 cut(s) 123, 366, 439
BccI CCATC 1 cut(s) 687
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 2 cut(s) 476, 725
BfmI CTRYAG 1 cut(s) 431
BfoI RGCGCY 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 534
BglII AGATCT 1 cut(s) 727
BisI GCNGC 3 cut(s) 137, 355, 428
BlsI GCNGC 3 cut(s) 138, 356, 429
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 632
BmsI GCATC 1 cut(s) 537
BsaAI YACGTR 1 cut(s) 708
Bse3DI GCAATG 1 cut(s) 550
BseGI GGATG 2 cut(s) 165, 323
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 3 cut(s) 123, 366, 439
BsgI GTGCAG 1 cut(s) 512
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 171, 727
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 632
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 550
BssMI GATC 2 cut(s) 171, 727
BstBAI YACGTR 1 cut(s) 708
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 90, 202
BstF5I GGATG 2 cut(s) 165, 323
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 2 cut(s) 174, 730
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 171, 727
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNSI RCATGY 5 cut(s) 279, 315, 444, 498, 668
BstSFI CTRYAG 1 cut(s) 431
BstSNI TACGTA 1 cut(s) 708
BstV1I GCAGC 3 cut(s) 123, 366, 439
BstX2I RGATCY 2 cut(s) 171, 727
BstYI RGATCY 2 cut(s) 171, 727
BtsCI GGATG 2 cut(s) 165, 323
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 1 cut(s) 442
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 52, 705
CspCI CAANNNNNGTGG 4 cut(s) 289, 324, 545, 580
CviAII CATG 6 cut(s) 48, 276, 312, 441, 495, 665
CviJI RGCY 4 cut(s) 208, 430, 542, 653
CviKI_1 RGCY 4 cut(s) 208, 430, 542, 653
CviQI GTAC 2 cut(s) 52, 705
DdeI CTNAG 2 cut(s) 90, 202
DpnI GATC 2 cut(s) 173, 729
DpnII GATC 2 cut(s) 171, 727
DraI TTTAAA 1 cut(s) 287
Eco105I TACGTA 1 cut(s) 708
Eco32I GATATC 1 cut(s) 644
Eco47I GGWCC 1 cut(s) 145
Eco47III AGCGCT 1 cut(s) 358
EcoRV GATATC 1 cut(s) 644
EcoT22I ATGCAT 2 cut(s) 281, 552
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 6 cut(s) 51, 279, 315, 444, 498, 668
FalI AAGNNNNNCTT 4 cut(s) 185, 217, 641, 673
FatI CATG 6 cut(s) 47, 275, 311, 440, 494, 664
Fnu4HI GCNGC 3 cut(s) 137, 355, 428
FokI GGATG 2 cut(s) 172, 310
Fsp4HI GCNGC 3 cut(s) 137, 355, 428
FspBI CTAG 2 cut(s) 476, 725
GlaI GCGC 1 cut(s) 358
GluI GCNGC 3 cut(s) 137, 355, 428
HaeII RGCGCY 1 cut(s) 360
HgaI GACGC 1 cut(s) 75
HhaI GCGC 1 cut(s) 359
Hin1II CATG 6 cut(s) 51, 279, 315, 444, 498, 668
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HinfI GANTC 2 cut(s) 244, 264
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 2 cut(s) 93, 484
Hpy188III TCNNGA 1 cut(s) 725
Hpy8I GTNNAC 1 cut(s) 589
HpyCH4IV ACGT 2 cut(s) 465, 707
HpyCH4V TGCA 9 cut(s) 139, 192, 279, 311, 427, 529, 550, 580, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 2 cut(s) 90, 202
HpySE526I ACGT 2 cut(s) 465, 707
Hsp92II CATG 6 cut(s) 51, 279, 315, 444, 498, 668
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 171, 727
LmnI GCTCC 2 cut(s) 351, 437
LpnPI CCDG 1 cut(s) 539
Lsp1109I GCAGC 3 cut(s) 123, 366, 439
LweI GCATC 1 cut(s) 537
MaeI CTAG 2 cut(s) 476, 725
MaeII ACGT 2 cut(s) 465, 707
MaeIII GTNAC 1 cut(s) 619
MalI GATC 2 cut(s) 173, 729
MboI GATC 2 cut(s) 171, 727
MboII GAAGA 2 cut(s) 408, 691
MflI RGATCY 2 cut(s) 171, 727
MluCI AATT 5 cut(s) 28, 60, 116, 377, 535
MnlI CCTC 4 cut(s) 150, 342, 378, 400
Mph1103I ATGCAT 2 cut(s) 281, 552
MseI TTAA 4 cut(s) 115, 286, 338, 659
Mva1269I GAATGC 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeII GATC 2 cut(s) 171, 727
NlaIII CATG 6 cut(s) 51, 279, 315, 444, 498, 668
NlaIV GGNNCC 1 cut(s) 632
NmuCI GTSAC 1 cut(s) 619
NsiI ATGCAT 2 cut(s) 281, 552
NspI RCATGY 5 cut(s) 279, 315, 444, 498, 668
PaeI GCATGC 1 cut(s) 444
PciI ACATGT 1 cut(s) 494
PctI GAATGC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 244, 264
PkrI GCNGC 3 cut(s) 138, 356, 429
Ppu21I YACGTR 1 cut(s) 708
PscI ACATGT 1 cut(s) 494
PshBI ATTAAT 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 632
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 2 cut(s) 171, 727
RsaI GTAC 2 cut(s) 53, 706
RsaNI GTAC 2 cut(s) 52, 705
SaqAI TTAA 4 cut(s) 115, 286, 338, 659
SatI GCNGC 3 cut(s) 137, 355, 428
Sau3AI GATC 2 cut(s) 171, 727
Sau96I GGNCC 1 cut(s) 145
SetI ASST 9 cut(s) 126, 294, 432, 468, 528, 544, 626, 659, 710
SfaNI GCATC 1 cut(s) 537
SfcI CTRYAG 1 cut(s) 431
SinI GGWCC 1 cut(s) 145
SnaBI TACGTA 1 cut(s) 708
SphI GCATGC 1 cut(s) 444
Sse9I AATT 5 cut(s) 28, 60, 116, 377, 535
SspI AATATT 1 cut(s) 519
SspMI CTAG 2 cut(s) 476, 725
TaiI ACGT 2 cut(s) 468, 710
TaqI TCGA 1 cut(s) 614
TasI AATT 5 cut(s) 28, 60, 116, 377, 535
TfiI GAWTC 2 cut(s) 244, 264
Tru1I TTAA 4 cut(s) 115, 286, 338, 659
Tru9I TTAA 4 cut(s) 115, 286, 338, 659
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 3 cut(s) 136, 354, 427
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 4 cut(s) 176, 257, 312, 692
VpaK11BI GGWCC 1 cut(s) 145
VspI ATTAAT 1 cut(s) 115
XapI RAATTY 1 cut(s) 60
XbaI TCTAGA 1 cut(s) 724
XceI RCATGY 5 cut(s) 279, 315, 444, 498, 668
XspI CTAG 2 cut(s) 476, 725
Zsp2I ATGCAT 2 cut(s) 281, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.