Rorug06G0430000

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000159
Physical Location & Seq
Reverse (-)
56551592 .. 56554691
3100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0430000.1

Sequence Viewer

Length: 1350 bp
ATGAGAGAGATCCTCCACATCCAGGGCGGCCAATGCGGCAACCAAATCGGCTCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGCGTCGACCCCACCGGACGCTACAAGGGCGATGGCTCCTCCGATCTCCAGCTCGAGAGGATCAACGTCTATTACAATGAGGCCTCCGGCGGCAGGTACGTCCCCCGCGCCGTGCTTATGGATCTTGAGCCCGGAACCATGGACAGCATCAGATCCGGCCCCTTCGGACAGATCTTCCGCCCCGATAACTTCGTCTTCGGACAGTCCGGCGCCGGTAATAATTGGGCCAAAGGTCACTATACCGAAGGAGCTGAGCTGATCGATTCCGTTCTCGATGTTGTTCGCAAGGAGGCGGAGAACTGCGATTGCCTTCAAGGTTTCCAGGTGTGCCACTCACTTGGAGGAGGAACTGGTTCTGGCATGGGAACCCTTCTGATATCGAAGATCAGAGAGGAATACCCTGACAGGATGATGCTTACATTCTCTGTGTTCCCATCTCCAAAGGTCTCGGACACTGTTGTGGAGCCATACAATGCCACTCTTTCAGTCCACCAGTTGGTAGAGAATGCTGATGAATGCATGGTTCTAGATAACGAGGCTCTTTATGACATTTGCTTCAGAACCTTAAAACTCAGTACCCCAAGCTTTGGTGACCTGAACCATTTGATATCTGCAACTATGAGTGGTGTTACTTGCTGCCTAAGGTTCCCTGGTCAGCTGAACTCTGATCTCCGGAAGCTGGCTGTCAATCTCATTCCATTCCCACGTCTTCACTTCTTCATGGTTGGGTTCGCCCCACTCACATCTCGCGGTTCCCAGCAGTACATCTCCCTCACCGTGCCAGAGCTGACTCAGCAAATGTGGGATGCCAAGAACATGATGTGTGCTGCTGACCCTCGCCACGGAAGGTACCTGACAGCCTCGGCCATGTTCAGGGGTAAGATGAGCACCAAAGAGGTGGATGAACAGATGATCAATGTGCAGAACAAGAACTCTTCCTACTTTGTTGAGTGGATTCCTCACAATGTGAAGTCCAGCGTGTGCGACATCCCTCCCCTGGGATTGAAAATGGCATCAACCTTTGTTGGTAACTCTACCTCAATCCAGGAGATGTTCAGGAGAGTGAGCGAGCAGTTCACAGCCATGTTCAGGCGCAAGGCCTTTTTGCATTGGTATACCGGAGAAGGTATGGACGAGATGGAGTTCACCGAAGCTGAGAGTAACATGAATGATTTGGTTGCCGAGTACCAGCAATACCAGGATGCTACAGTTGAGGATGAAGGTGAATATGAGGAGGATGGTGTTGAAGGTGAGTATGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

449

Amino Acids

50.36

Weight (kDa)

4.76

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 213 1.1e-64 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 263 - 384 5.7e-39 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
Acc65I GGTACC 1 cut(s) 933
AccB1I GGYRCC 2 cut(s) 293, 933
AccB7I CCANNNNNTGG 3 cut(s) 60, 580, 671
AccI GTMKAC 2 cut(s) 90, 1199
AccII CGCG 2 cut(s) 192, 834
AccIII TCCGGA 1 cut(s) 756
AciI CCGC 7 cut(s) 27, 36, 174, 190, 262, 377, 834
AclWI GGATC 4 cut(s) 4, 152, 213, 231
AcoI YGGCCR 2 cut(s) 28, 948
AcuI CTGAAG 1 cut(s) 625
AcyI GRCGYC 2 cut(s) 87, 294
AdeI CACNNNGTG 1 cut(s) 1051
AfaI GTAC 5 cut(s) 182, 661, 848, 935, 1271
AgsI TTSAA 3 cut(s) 398, 1090, 1331
AjiI CACGTC 1 cut(s) 791
AjnI CCWGG 6 cut(s) 21, 405, 733, 1080, 1128, 1281
AleI CACNNNNGTG 1 cut(s) 542
AluBI AGCT 8 cut(s) 136, 335, 340, 669, 742, 763, 871, 1238
AluI AGCT 8 cut(s) 136, 335, 340, 669, 742, 763, 871, 1238
Alw21I GWGCWC 2 cut(s) 84, 974
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 4 cut(s) 4, 152, 213, 231
Ama87I CYCGRG 1 cut(s) 137
Aor13HI TCCGGA 1 cut(s) 756
AoxI GGCC 6 cut(s) 28, 165, 241, 309, 948, 1182
ApeKI GCWGC 2 cut(s) 720, 911
Asp700I GAANNNNTTC 1 cut(s) 436
Asp718I GGTACC 1 cut(s) 933
AspLEI GCGC 3 cut(s) 194, 296, 1179
AspS9I GGNCC 2 cut(s) 242, 309
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 5 cut(s) 686, 850, 1222, 1319, 1346
AvaI CYCGRG 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 725
BanI GGYRCC 2 cut(s) 293, 933
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 2 cut(s) 271, 785
Bbv12I GWGCWC 2 cut(s) 84, 974
BbvI GCAGC 2 cut(s) 707, 898
BccI CCATC 4 cut(s) 110, 526, 1216, 1316
BceAI ACGGC 2 cut(s) 100, 179
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 6 cut(s) 23, 407, 735, 1082, 1130, 1283
BclI TGATCA 1 cut(s) 996
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 1 cut(s) 1290
BfoI RGCGCY 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 36
BglII AGATCT 1 cut(s) 255
BisI GCNGC 5 cut(s) 28, 37, 175, 721, 912
BlpI GCTNAGC 1 cut(s) 336
BlsI GCNGC 5 cut(s) 29, 38, 176, 722, 913
Bme1390I CCNGG 7 cut(s) 23, 216, 407, 735, 1082, 1130, 1283
BmeT110I CYCGRG 1 cut(s) 137
BmgBI CACGTC 1 cut(s) 791
BmgT120I GGNCC 2 cut(s) 242, 309
BmrFI CCNGG 7 cut(s) 23, 216, 407, 735, 1082, 1130, 1283
BmsI GCATC 5 cut(s) 240, 486, 880, 1106, 1276
BpiI GAAGAC 2 cut(s) 271, 785
BplI GAGNNNNNCTC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 116
Bpu1102I GCTNAGC 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 216
Bsa29I ATCGAT 1 cut(s) 345
BsaHI GRCGYC 2 cut(s) 87, 294
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 7 cut(s) 22, 222, 733, 925, 945, 1080, 1081
BsaWI WCCGGW 3 cut(s) 98, 756, 1202
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 439, 577
Bse21I CCTNAGG 1 cut(s) 725
BseAI TCCGGA 1 cut(s) 756
BseBI CCWGG 6 cut(s) 23, 407, 735, 1082, 1130, 1283
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 7 cut(s) 22, 222, 733, 925, 945, 1080, 1081
BseGI GGATG 8 cut(s) 18, 498, 895, 991, 1071, 1291, 1306, 1327
BseMII CTCAG 4 cut(s) 327, 670, 890, 1230
BseNI ACTGG 2 cut(s) 439, 577
BseRI GAGGAG 3 cut(s) 112, 441, 1331
BseXI GCAGC 2 cut(s) 707, 898
BseYI CCCAGC 1 cut(s) 840
BsgI GTGCAG 1 cut(s) 1025
Bsh1236I CGCG 2 cut(s) 192, 834
BshFI GGCC 6 cut(s) 30, 167, 243, 311, 950, 1184
BshNI GGYRCC 2 cut(s) 293, 933
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 84, 974
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 8 cut(s) 99, 171, 216, 240, 291, 297, 757, 1203
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 2 cut(s) 595, 605
BsnI GGCC 6 cut(s) 30, 167, 243, 311, 950, 1184
Bso31I GGTCTC 1 cut(s) 535
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 3 cut(s) 84, 216, 974
Bsp13I TCCGGA 1 cut(s) 756
Bsp1720I GCTNAGC 1 cut(s) 336
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 7 cut(s) 27, 36, 174, 190, 262, 377, 834
BspANI GGCC 6 cut(s) 30, 167, 243, 311, 950, 1184
BspCNI CTCAG 4 cut(s) 328, 669, 889, 1231
BspDI ATCGAT 1 cut(s) 345
BspEI TCCGGA 1 cut(s) 756
BspFNI CGCG 2 cut(s) 192, 834
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 4 cut(s) 4, 152, 213, 231
BspT107I GGYRCC 2 cut(s) 293, 933
BspTNI GGTCTC 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 2 cut(s) 439, 577
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 7 cut(s) 22, 222, 733, 925, 945, 1080, 1081
BssNAI GTATAC 1 cut(s) 1200
BssNI GRCGYC 2 cut(s) 87, 294
BssT1I CCWWGG 1 cut(s) 222
Bst1107I GTATAC 1 cut(s) 1200
Bst2UI CCWGG 6 cut(s) 23, 407, 735, 1082, 1130, 1283
Bst4CI ACNGT 4 cut(s) 288, 541, 862, 1294
Bst6I CTCTTC 1 cut(s) 1024
BstACI GRCGYC 2 cut(s) 87, 294
BstC8I GCNNGC 2 cut(s) 765, 1154
BstDEI CTNAG 5 cut(s) 336, 656, 725, 876, 1239
BstDSI CCRYGG 2 cut(s) 222, 925
BstEII GGTNACC 1 cut(s) 674
BstF5I GGATG 8 cut(s) 18, 498, 895, 991, 1071, 1291, 1306, 1327
BstFNI CGCG 2 cut(s) 192, 834
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 3 cut(s) 194, 296, 1179
BstMAI GTCTC 1 cut(s) 535
BstMWI GCNNNNNNNGC 4 cut(s) 33, 36, 111, 877
BstNI CCWGG 6 cut(s) 23, 407, 735, 1082, 1130, 1283
BstPI GGTNACC 1 cut(s) 674
BstSCI CCNGG 7 cut(s) 21, 214, 405, 733, 1080, 1128, 1281
BstSFI CTRYAG 1 cut(s) 1290
BstUI CGCG 2 cut(s) 192, 834
BstV1I GCAGC 2 cut(s) 707, 898
BstV2I GAAGAC 2 cut(s) 271, 785
BstX2I RGATCY 4 cut(s) 9, 205, 236, 255
BstXI CCANNNNNNTGG 2 cut(s) 422, 982
BstYI RGATCY 4 cut(s) 9, 205, 236, 255
BstZ17I GTATAC 1 cut(s) 1200
Bsu15I ATCGAT 1 cut(s) 345
Bsu36I CCTNAGG 1 cut(s) 725
BsuRI GGCC 6 cut(s) 30, 167, 243, 311, 950, 1184
BsuTUI ATCGAT 1 cut(s) 345
BtgI CCRYGG 2 cut(s) 222, 925
BtgZI GCGATG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 791
BtsCI GGATG 8 cut(s) 18, 498, 895, 991, 1071, 1291, 1306, 1327
BtsIMutI CAGTG 1 cut(s) 537
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 765, 1154
CfoI GCGC 3 cut(s) 194, 296, 1179
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 242, 309
ClaI ATCGAT 1 cut(s) 345
CseI GACGC 2 cut(s) 76, 111
Csp6I GTAC 5 cut(s) 181, 660, 847, 934, 1270
CviAII CATG 8 cut(s) 223, 445, 604, 805, 901, 952, 1168, 1249
CviQI GTAC 5 cut(s) 181, 660, 847, 934, 1270
DdeI CTNAG 5 cut(s) 336, 656, 725, 876, 1239
DinI GGCGCC 1 cut(s) 295
DraIII CACNNNGTG 1 cut(s) 1051
EaeI YGGCCR 2 cut(s) 28, 948
Eam1104I CTCTTC 1 cut(s) 1024
EarI CTCTTC 1 cut(s) 1024
EciI GGCGGA 2 cut(s) 251, 392
Eco130I CCWWGG 1 cut(s) 222
Eco147I AGGCCT 2 cut(s) 167, 1184
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 535
Eco32I GATATC 2 cut(s) 462, 693
Eco57I CTGAAG 1 cut(s) 625
Eco81I CCTNAGG 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 137
Eco91I GGTNACC 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 674
EcoRII CCWGG 6 cut(s) 21, 405, 733, 1080, 1128, 1281
EcoRV GATATC 2 cut(s) 462, 693
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 605
EcoT38I GRGCYC 1 cut(s) 216
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 8 cut(s) 226, 448, 607, 808, 904, 955, 1171, 1252
FaqI GGGAC 1 cut(s) 170
FatI CATG 8 cut(s) 222, 444, 603, 804, 900, 951, 1167, 1248
FauI CCCGC 1 cut(s) 197
FbaI TGATCA 1 cut(s) 996
FblI GTMKAC 2 cut(s) 90, 1199
Fnu4HI GCNGC 5 cut(s) 28, 37, 175, 721, 912
FokI GGATG 8 cut(s) 5, 505, 902, 998, 1058, 1298, 1313, 1334
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 5 cut(s) 28, 37, 175, 721, 912
FspBI CTAG 1 cut(s) 611
GlaI GCGC 3 cut(s) 193, 295, 1178
GluI GCNGC 5 cut(s) 28, 37, 175, 721, 912
GsaI CCCAGC 1 cut(s) 844
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 6 cut(s) 30, 167, 243, 311, 950, 1184
HapII CCGG 8 cut(s) 99, 171, 216, 240, 291, 297, 757, 1203
HgaI GACGC 2 cut(s) 76, 111
HhaI GCGC 3 cut(s) 194, 296, 1179
Hin1I GRCGYC 2 cut(s) 87, 294
Hin1II CATG 8 cut(s) 226, 448, 607, 808, 904, 955, 1171, 1252
Hin6I GCGC 3 cut(s) 192, 294, 1177
HinP1I GCGC 3 cut(s) 192, 294, 1177
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 667
HinfI GANTC 3 cut(s) 347, 874, 1039
HpaII CCGG 8 cut(s) 99, 171, 216, 240, 291, 297, 757, 1203
HphI GGTGA 5 cut(s) 686, 850, 1222, 1319, 1346
Hpy166II GTNNAC 5 cut(s) 91, 574, 1161, 1200, 1230
Hpy188I TCNGA 9 cut(s) 127, 236, 251, 284, 459, 473, 535, 644, 751
Hpy188III TCNNGA 6 cut(s) 139, 209, 356, 611, 757, 1141
Hpy8I GTNNAC 5 cut(s) 91, 574, 1161, 1200, 1230
Hpy99I CGWCG 2 cut(s) 80, 92
HpyAV CCTTC 8 cut(s) 256, 323, 404, 464, 924, 1202, 1298, 1325
HpyCH4III ACNGT 4 cut(s) 288, 541, 862, 1294
HpyCH4IV ACGT 3 cut(s) 150, 183, 790
HpyCH4V TGCA 4 cut(s) 603, 698, 1006, 1192
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 36, 111, 877
HpyF3I CTNAG 5 cut(s) 336, 656, 725, 876, 1239
HpySE526I ACGT 3 cut(s) 150, 183, 790
Hsp92I GRCGYC 2 cut(s) 87, 294
Hsp92II CATG 8 cut(s) 226, 448, 607, 808, 904, 955, 1171, 1252
HspAI GCGC 3 cut(s) 192, 294, 1177
KasI GGCGCC 1 cut(s) 293
Kpn2I TCCGGA 1 cut(s) 756
KpnI GGTACC 1 cut(s) 937
Ksp22I TGATCA 1 cut(s) 996
LmnI GCTCC 4 cut(s) 56, 125, 332, 547
Lsp1109I GCAGC 2 cut(s) 707, 898
LweI GCATC 5 cut(s) 240, 486, 880, 1106, 1276
MaeI CTAG 1 cut(s) 611
MaeII ACGT 3 cut(s) 150, 183, 790
MaeIII GTNAC 5 cut(s) 317, 674, 712, 1112, 1244
MboII GAAGA 6 cut(s) 250, 271, 478, 785, 793, 1011
MflI RGATCY 4 cut(s) 9, 205, 236, 255
MhlI GDGCHC 3 cut(s) 84, 216, 974
MluCI AATT 1 cut(s) 304
Mly113I GGCGCC 1 cut(s) 294
MlyI GAGTC 1 cut(s) 868
Mph1103I ATGCAT 1 cut(s) 605
MroI TCCGGA 1 cut(s) 756
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 1 cut(s) 650
MslI CAYNNNNRTG 2 cut(s) 542, 1166
MspA1I CMGCKG 1 cut(s) 742
MspI CCGG 8 cut(s) 99, 171, 216, 240, 291, 297, 757, 1203
MspR9I CCNGG 7 cut(s) 23, 216, 407, 735, 1082, 1130, 1283
Mva1269I GAATGC 2 cut(s) 595, 605
MvaI CCWGG 6 cut(s) 23, 407, 735, 1082, 1130, 1283
MvnI CGCG 2 cut(s) 192, 834
MwoI GCNNNNNNNGC 4 cut(s) 33, 36, 111, 877
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 1 cut(s) 216
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 8 cut(s) 226, 448, 607, 808, 904, 955, 1171, 1252
NmeAIII GCCGAG 2 cut(s) 926, 1291
NmuCI GTSAC 2 cut(s) 317, 674
NsiI ATGCAT 1 cut(s) 605
OliI CACNNNNGTG 1 cut(s) 542
PaeR7I CTCGAG 1 cut(s) 137
PasI CCCWGGG 1 cut(s) 1081
PceI AGGCCT 2 cut(s) 167, 1184
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PctI GAATGC 2 cut(s) 595, 605
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 2 cut(s) 347, 1039
PflMI CCANNNNNTGG 3 cut(s) 60, 580, 671
PfoI TCCNGGA 1 cut(s) 1128
PkrI GCNGC 5 cut(s) 29, 38, 176, 722, 913
PleI GAGTC 1 cut(s) 868
PluTI GGCGCC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 868
Psp6I CCWGG 6 cut(s) 21, 405, 733, 1080, 1128, 1281
PspEI GGTNACC 1 cut(s) 674
PspFI CCCAGC 1 cut(s) 840
PspGI CCWGG 6 cut(s) 21, 405, 733, 1080, 1128, 1281
PspPI GGNCC 2 cut(s) 242, 309
PsrI GAACNNNNNNTAC 2 cut(s) 1007, 1039
PsuI RGATCY 4 cut(s) 9, 205, 236, 255
PvuII CAGCTG 1 cut(s) 742
RsaI GTAC 5 cut(s) 182, 661, 848, 935, 1271
RsaNI GTAC 5 cut(s) 181, 660, 847, 934, 1270
RseI CAYNNNNRTG 2 cut(s) 542, 1166
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 650
SatI GCNGC 5 cut(s) 28, 37, 175, 721, 912
Sau96I GGNCC 2 cut(s) 242, 309
SchI GAGTC 1 cut(s) 868
ScrFI CCNGG 7 cut(s) 23, 216, 407, 735, 1082, 1130, 1283
SduI GDGCHC 3 cut(s) 84, 216, 974
SfaNI GCATC 5 cut(s) 240, 486, 880, 1106, 1276
SfcI CTRYAG 1 cut(s) 1290
SfoI GGCGCC 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 2 cut(s) 542, 1166
SmlI CTYRAG 2 cut(s) 137, 209
SmoI CTYRAG 2 cut(s) 137, 209
Sse9I AATT 1 cut(s) 304
SseBI AGGCCT 2 cut(s) 167, 1184
SsiI CCGC 7 cut(s) 27, 36, 174, 190, 262, 377, 834
SspDI GGCGCC 1 cut(s) 293
SspMI CTAG 1 cut(s) 611
StuI AGGCCT 2 cut(s) 167, 1184
StyD4I CCNGG 7 cut(s) 21, 214, 405, 733, 1080, 1128, 1281
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 4 cut(s) 288, 541, 862, 1294
TaiI ACGT 3 cut(s) 153, 186, 793
TaqI TCGA 5 cut(s) 90, 138, 345, 357, 464
TasI AATT 1 cut(s) 304
TatI WGTACW 1 cut(s) 846
TauI GCSGC 3 cut(s) 30, 39, 177
TfiI GAWTC 2 cut(s) 347, 1039
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 2 cut(s) 317, 674
TseI GCWGC 2 cut(s) 720, 911
Tsp45I GTSAC 2 cut(s) 317, 674
TspDTI ATGAA 5 cut(s) 612, 793, 1002, 1265, 1317
TspGWI ACGGA 2 cut(s) 340, 942
TspRI CASTG 1 cut(s) 544
Van91I CCANNNNNTGG 3 cut(s) 60, 580, 671
XbaI TCTAGA 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 137
XmiI GTMKAC 2 cut(s) 90, 1199
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 1 cut(s) 611
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.