FvH4_4g15190

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000159
Physical Location & Seq
Forward (+)
18779384 .. 18779867
484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15190.t1

Sequence Viewer

Length: 414 bp
ATGAAACACTTGACTACACTGGATACTTTATTTATTCGTAAGTGTGGGAAGCTTAAGCTGATGAGTTCCGTAGAAGGCCCTCAAGGCCACAGATCAATTGGGATTGCCTATTCAGACTTGGATGCTTTGCCCCGTTGGCTTGATGATTCTGCTGAAACTTTACAGAGTTTAGGACTCGAACAGTGTGATAATCTAACTAAACTTCCAGGGTTGCAGAACTTCAAATTCCTTGAGCAACTAGTGATTAAAGACTGCTTCAAATTGTCAGTAAAAGCTGCAAGGCAATTGAAAGGTGAAGATTGGTCAAAGATGGCACGTCATGCAAATATTACGCTCGACTCTGATGTGGATACTGATGATGAAGAAGATGCAGAAGATGATGAAGGTGCTTTCGATGTTGATAGTACTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

138

Amino Acids

15.35

Weight (kDa)

4.65

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 31 - 85 4.2e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 406
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 3 cut(s) 223, 259, 289
AhlI ACTAGT 1 cut(s) 238
AjiI CACGTC 1 cut(s) 317
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 52, 58, 275
AluI AGCT 3 cut(s) 52, 58, 275
AoxI GGCC 2 cut(s) 76, 85
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 305
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 2 cut(s) 16, 343
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 1 cut(s) 239
BfrI CTTAAG 1 cut(s) 53
BfuI GTATCC 2 cut(s) 16, 343
BglI GCCNNNNNGGC 2 cut(s) 84, 136
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 2 cut(s) 112, 358
BpuEI CTTGAG 2 cut(s) 66, 251
BsaJI CCNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 262
BshFI GGCC 2 cut(s) 78, 87
BsnI GGCC 2 cut(s) 78, 87
Bsp143I GATC 1 cut(s) 92
BspANI GGCC 2 cut(s) 78, 87
BspTI CTTAAG 1 cut(s) 53
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 320
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 3 cut(s) 84, 136, 320
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 262
BsuI GTATCC 2 cut(s) 16, 343
BsuRI GGCC 2 cut(s) 78, 87
BtrI CACGTC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 17, 188
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 405
CviAII CATG 1 cut(s) 320
CviJI RGCY 6 cut(s) 52, 58, 78, 87, 139, 275
CviKI_1 RGCY 6 cut(s) 52, 58, 78, 87, 139, 275
CviQI GTAC 1 cut(s) 405
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 323
FaiI YATR 1 cut(s) 321
FatI CATG 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 1 cut(s) 239
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 2 cut(s) 78, 87
Hin1II CATG 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 146, 174, 338
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 115, 343
HpyAV CCTTC 2 cut(s) 68, 377
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 214, 278, 323, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 136, 320
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 1 cut(s) 92
LpnPI CCDG 3 cut(s) 5, 192, 219
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 2 cut(s) 112, 358
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 316
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 4 cut(s) 308, 374, 377, 386
MfeI CAATTG 2 cut(s) 96, 284
MluCI AATT 4 cut(s) 96, 224, 260, 284
MlyI GAGTC 2 cut(s) 168, 332
MnlI CCTC 1 cut(s) 90
MseI TTAA 2 cut(s) 54, 246
MspCI CTTAAG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 2 cut(s) 96, 284
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 84, 136, 320
NdeII GATC 1 cut(s) 92
NlaIII CATG 1 cut(s) 323
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 2 cut(s) 168, 332
PpsI GAGTC 2 cut(s) 168, 332
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
SaqAI TTAA 2 cut(s) 54, 246
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 77
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 2 cut(s) 168, 332
ScrFI CCNGG 1 cut(s) 207
SetI ASST 6 cut(s) 54, 60, 277, 295, 319, 388
SfaNI GCATC 2 cut(s) 112, 358
SfiI GGCCNNNNNGGCC 1 cut(s) 84
SmlI CTYRAG 3 cut(s) 53, 81, 230
SmoI CTYRAG 3 cut(s) 53, 81, 230
SpeI ACTAGT 1 cut(s) 238
Sse9I AATT 4 cut(s) 96, 224, 260, 284
SspI AATATT 1 cut(s) 328
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 177, 336, 393
TasI AATT 4 cut(s) 96, 224, 260, 284
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 54, 246
Tru9I TTAA 2 cut(s) 54, 246
TscAI CASTG 2 cut(s) 24, 188
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 17, 375, 396
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 2 cut(s) 24, 188
Vha464I CTTAAG 1 cut(s) 53
XapI RAATTY 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 1 cut(s) 239
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.