Rh2BG281000

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000159
Physical Location & Seq
Reverse (-)
30774667 .. 30787368
12702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG281000.1

Sequence Viewer

Length: 336 bp
ATGGAGTTTGCCAGCAGCATTGCAGATGACGTCTTGGGTAGGCTAGCTTCACAAGCTTCCCAACAGTTCTCCTTGGCATGGGGTGCCCAACTTAAGCTCAGCAAGCTCAACAACACCTTATCTGCCATCAAACTAGTGCTCGAGGATGCAGAGAAGAAGCAAGTGAGATATCCCCTAATCACTCGTTGGTTAGGAAATCTCAAAGATGTTTGTCATGACGTTGATGATGTCTTGGACGAACTGGACTTCCAAAAGTTGTGGTTGAAAATGGACGTCGACAACTGTGGGAAGATCAAAGGAAAGCATGTATTGGGTGAGTATTTTGGGGTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

111

Amino Acids

12.52

Weight (kDa)

5.61

Isoelectric Point (pI)

16.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 89 1e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 33, 276
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 276
AcyI GRCGYC 2 cut(s) 30, 273
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 78
AflII CTTAAG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 265
AhlI ACTAGT 1 cut(s) 133
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 4 cut(s) 47, 56, 97, 106
AluI AGCT 4 cut(s) 47, 56, 97, 106
Alw21I GWGCWC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 326
AsuNHI GCTAGC 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 31, 63
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 134
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 2 cut(s) 44, 134
BfrI CTTAAG 1 cut(s) 92
BisI GCNGC 1 cut(s) 16
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 47
Bpu1102I GCTNAGC 1 cut(s) 98
BsaHI GRCGYC 2 cut(s) 30, 273
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 88, 141
Bsp143I GATC 1 cut(s) 291
Bsp1720I GCTNAGC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 85
BspOI GCTAGC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 83
BspTI CTTAAG 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 291
BssNI GRCGYC 2 cut(s) 30, 273
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 66, 284
BstACI GRCGYC 2 cut(s) 30, 273
BstAFI CTTAAG 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 13, 45, 104
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 3 cut(s) 53, 83, 103
BstNSI RCATGY 1 cut(s) 308
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 151
Cac8I GCNNGC 3 cut(s) 13, 45, 104
CciI TCATGA 1 cut(s) 214
Csp6I GTAC 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 239, 274
CviAII CATG 3 cut(s) 78, 215, 305
CviJI RGCY 5 cut(s) 43, 47, 56, 97, 106
CviKI_1 RGCY 5 cut(s) 43, 47, 56, 97, 106
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 1 cut(s) 98
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 72
Eco32I GATATC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 3 cut(s) 81, 218, 308
FaiI YATR 3 cut(s) 79, 216, 306
FatI CATG 3 cut(s) 77, 214, 304
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 2 cut(s) 44, 134
GluI GCNGC 1 cut(s) 16
Hin1I GRCGYC 2 cut(s) 30, 273
Hin1II CATG 3 cut(s) 81, 218, 308
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 54
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 278
HpyCH4III ACNGT 2 cut(s) 66, 284
HpyCH4IV ACGT 3 cut(s) 30, 219, 273
HpyCH4V TGCA 2 cut(s) 23, 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 83, 103
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 3 cut(s) 30, 219, 273
Hsp92I GRCGYC 2 cut(s) 30, 273
Hsp92II CATG 3 cut(s) 81, 218, 308
Kzo9I GATC 1 cut(s) 291
LpnPI CCDG 2 cut(s) 25, 227
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 44, 134
MaeII ACGT 3 cut(s) 30, 219, 273
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 2 cut(s) 166, 301
MhlI GDGCHC 2 cut(s) 88, 141
MnlI CCTC 1 cut(s) 136
MseI TTAA 1 cut(s) 93
MspCI CTTAAG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 53, 83, 103
NdeII GATC 1 cut(s) 291
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 3 cut(s) 81, 218, 308
NlaIV GGNNCC 1 cut(s) 85
NspI RCATGY 1 cut(s) 308
PaeR7I CTCGAG 1 cut(s) 140
PagI TCATGA 1 cut(s) 214
PkrI GCNGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 85
PspXI VCTCGAGB 1 cut(s) 140
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 1 cut(s) 291
SduI GDGCHC 2 cut(s) 88, 141
SetI ASST 8 cut(s) 33, 49, 58, 99, 108, 119, 222, 276
SfaNI GCATC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 92, 140
SmoI CTYRAG 2 cut(s) 92, 140
SpeI ACTAGT 1 cut(s) 133
SspMI CTAG 2 cut(s) 44, 134
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 66, 284
TaiI ACGT 3 cut(s) 33, 222, 276
TaqI TCGA 2 cut(s) 141, 276
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseI GCWGC 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 92
XceI RCATGY 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 2 cut(s) 44, 134
ZraI GACGTC 2 cut(s) 31, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.