MD06G1096400.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000159
Physical Location & Seq
Reverse (-)
23053955 .. 23055384
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1096400.v1.1.491

Sequence Viewer

Length: 1374 bp
ATGCACATGGAGAGGGAGACCCACTCTTTTGTGCACGCCCCAGATGTTATCGGGAGAGAGAGCGAAAAAGAAGAGATTGTCGTCCAACTCTTTAAGGACACTCACACTGGTCCAGGTGATGAGGAGAATGTTTCTGTTATTTCAATTAATGGATTAGGAGGATTGGGAAAGACTACGCTTGCTAAATTGGTGTATAATGATAACAGGGTAGTGACCAACTTTGAGTTAAGAATATGGGTTTGCGTATCAGACGATTTTGATAGTAAAAGATTGCTTAGCGAAATTGTTACTGCGGCAACCAGCCAAAAATGTGGTGATGAAAGTATTGAACAGATGCAAATGAAGTTGCGACGTGCTTTGACTGGTAAAAAACTTTTGCTGGTGTTGGATGATGTCTGGGACAAGGGGCCAATGGGAATAACAGTCAAAAAATGGATTGATTTAAAATCTTTGTTAAATGTTGCAGCTTGCGGGCGTAAAATTATTGTAACAACGCGCAATGAATCAGTAGCTTTGCTTATGGGGGATGCACACATGCATCTGTTGAAAAGAAGAGCAAAACCATCCGAACTTGATGAAAATAGGGGAAGATATTGTGAAAAGTGTGGAGGGGTTCCCCTTGCCTTGTATACCCTAGGGGGCCTACTCTACTCGAATAAGGAAGAACGTTATTGGTCATATGTAAGAGATAGTGACATATGGAATTTGGAACAAGGAAGCGACGGCATTTTACCTGCACTCAAGTTAAGCTACGATGCATTGCCAATTTACTTGAAACCTTGTTTTGCCTTTTGTTCACTATTCCCAAAGGACTACATATTTCGAAGTTCAGAATTGATCCCGTTGTGGATGGCTCAAGGCTTTGTTCAATCCTCCAAAGGATACCAAGAACTTGAAGATATCGGTCTGGACTACATTAGGAAATTATGTTCTAGATATTTCTTTCAGATTGAGGAAGATAATTTCCTTTTTGTACGGTTTAGAATGCACGATCTAGTTCATGATTTAGCAACCTCAACAGCACAGCTAGAATACTCATCTCTAAATTTTCGTCCTGGTGAATCTTCCACGATGATCCAGCATGTGTCAATATCTCAAAAGGAATTGTCCAAGGATAAAGAAGAAGACCCAGAATTCTTACTCCCTTTTGAGAAATTGCGAACCATTCTAATTCCAGACTGGAATAGTGAATATCTTCCTACAGAAGTTGGTGTCAACAATCAATCTTTTTTGAAGAGATGCATCTCAATGTTCAACTACCTACGGCTTCTAGATCTTAGTAACTTGACCCTCAAGGTACTGCCTGTTGGAAGTTTGAGTAGAAATTTCCTTGTCCCACATTGGCCATTCCCAAAAGAGTTTATCACTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

458

Amino Acids

52.4

Weight (kDa)

5.89

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 41 - 177 3.5e-27 NB-ARC domain
WHD_DRP PF23559 267 - 337 1.1e-23 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1372
Acc36I ACCTGC 1 cut(s) 742
AccI GTMKAC 1 cut(s) 629
AccII CGCG 1 cut(s) 496
AciI CCGC 2 cut(s) 293, 471
AclI AACGTT 1 cut(s) 667
AclWI GGATC 2 cut(s) 832, 1069
AcoI YGGCCR 1 cut(s) 1343
AcsI RAATTY 4 cut(s) 703, 1045, 1133, 1324
AfaI GTAC 2 cut(s) 975, 1299
AgsI TTSAA 8 cut(s) 144, 329, 547, 775, 869, 896, 1234, 1255
AjiI CACGTC 1 cut(s) 353
AjnI CCWGG 2 cut(s) 112, 1054
AloI GAACNNNNNNTCC 2 cut(s) 913, 945
AluBI AGCT 4 cut(s) 467, 512, 750, 1027
AluI AGCT 4 cut(s) 467, 512, 750, 1027
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 11
Alw44I GTGCAC 1 cut(s) 32
AlwI GGATC 2 cut(s) 832, 1069
AoxI GGCC 3 cut(s) 407, 640, 1343
ApaLI GTGCAC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 4 cut(s) 703, 1045, 1133, 1324
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 1194
AspA2I CCTAGG 1 cut(s) 634
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 3 cut(s) 110, 407, 640
AsuHPI GGTGA 3 cut(s) 128, 326, 1070
AsuII TTCGAA 1 cut(s) 823
AvaII GGWCC 1 cut(s) 110
AvrII CCTAGG 1 cut(s) 634
BaeGI GKGCMC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 1345
BbsI GAAGAC 1 cut(s) 1131
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 476
BccI CCATC 2 cut(s) 571, 844
BceAI ACGGC 2 cut(s) 739, 1280
BciT130I CCWGG 2 cut(s) 114, 1056
BciVI GTATCC 1 cut(s) 875
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 5 cut(s) 635, 933, 995, 1028, 1271
BfmI CTRYAG 1 cut(s) 1200
BfuAI ACCTGC 1 cut(s) 742
BfuI GTATCC 1 cut(s) 875
BglII AGATCT 1 cut(s) 1273
BisI GCNGC 2 cut(s) 294, 465
BlnI CCTAGG 1 cut(s) 634
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 2 cut(s) 295, 466
Bme1390I CCNGG 2 cut(s) 114, 1056
Bme18I GGWCC 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 353
BmgT120I GGNCC 3 cut(s) 110, 407, 640
BmiI GGNNCC 3 cut(s) 408, 615, 641
BmrFI CCNGG 2 cut(s) 114, 1056
BmsI GCATC 6 cut(s) 324, 517, 547, 745, 1229, 1251
BpiI GAAGAC 1 cut(s) 1131
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bpu1102I GCTNAGC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 823
BpuEI CTTGAG 3 cut(s) 725, 840, 1277
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 634, 1110
Bse1I ACTGG 3 cut(s) 112, 367, 1184
Bse3DI GCAATG 2 cut(s) 505, 758
BseBI CCWGG 2 cut(s) 114, 1056
BseDI CCNNGG 2 cut(s) 634, 1110
BseGI GGATG 4 cut(s) 394, 532, 563, 855
BseMI GCAATG 2 cut(s) 505, 758
BseNI ACTGG 3 cut(s) 112, 367, 1184
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 476
BsgI GTGCAG 1 cut(s) 720
Bsh1236I CGCG 1 cut(s) 496
BshFI GGCC 3 cut(s) 409, 642, 1345
BsiHKAI GWGCWC 1 cut(s) 36
BslFI GGGAC 2 cut(s) 413, 1319
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 2 cut(s) 413, 1319
BsmI GAATGC 1 cut(s) 990
BsnI GGCC 3 cut(s) 409, 642, 1345
Bso31I GGTCTC 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 823
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 4 cut(s) 837, 991, 1074, 1273
Bsp1720I GCTNAGC 1 cut(s) 275
BspACI CCGC 2 cut(s) 293, 471
BspANI GGCC 3 cut(s) 409, 642, 1345
BspFNI CGCG 1 cut(s) 496
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 3 cut(s) 408, 615, 641
BspMI ACCTGC 1 cut(s) 742
BspPI GGATC 2 cut(s) 832, 1069
BspQI GCTCTTC 1 cut(s) 547
BspT104I TTCGAA 1 cut(s) 823
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 2 cut(s) 505, 758
BsrI ACTGG 3 cut(s) 112, 367, 1184
BssECI CCNNGG 2 cut(s) 634, 1110
BssMI GATC 4 cut(s) 837, 991, 1074, 1273
BssNAI GTATAC 1 cut(s) 630
BssT1I CCWWGG 2 cut(s) 634, 1110
Bst1107I GTATAC 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 114, 1056
Bst4CI ACNGT 2 cut(s) 424, 978
Bst6I CTCTTC 3 cut(s) 66, 547, 1229
BstBI TTCGAA 1 cut(s) 823
BstC8I GCNNGC 4 cut(s) 36, 180, 469, 473
BstDEI CTNAG 2 cut(s) 275, 1277
BstF5I GGATG 4 cut(s) 394, 532, 563, 855
BstFNI CGCG 1 cut(s) 496
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 4 cut(s) 840, 994, 1077, 1276
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 4 cut(s) 837, 991, 1074, 1273
BstNI CCWGG 2 cut(s) 114, 1056
BstNSI RCATGY 2 cut(s) 538, 1085
BstSCI CCNGG 2 cut(s) 112, 1054
BstSFI CTRYAG 1 cut(s) 1200
BstSLI GKGCMC 1 cut(s) 36
BstUI CGCG 1 cut(s) 496
BstV1I GCAGC 1 cut(s) 476
BstV2I GAAGAC 1 cut(s) 1131
BstX2I RGATCY 1 cut(s) 1273
BstXI CCANNNNNNTGG 1 cut(s) 311
BstYI RGATCY 1 cut(s) 1273
BstZ17I GTATAC 1 cut(s) 630
BsuI GTATCC 1 cut(s) 875
BsuRI GGCC 3 cut(s) 409, 642, 1345
BtrI CACGTC 1 cut(s) 353
BtsCI GGATG 4 cut(s) 394, 532, 563, 855
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 4 cut(s) 36, 180, 469, 473
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 3 cut(s) 110, 407, 640
Csp6I GTAC 2 cut(s) 974, 1298
CviAII CATG 4 cut(s) 7, 535, 1001, 1082
CviQI GTAC 2 cut(s) 974, 1298
DdeI CTNAG 2 cut(s) 275, 1277
DpnI GATC 4 cut(s) 839, 993, 1076, 1275
DpnII GATC 4 cut(s) 837, 991, 1074, 1273
DraI TTTAAA 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 1343
Eam1104I CTCTTC 3 cut(s) 66, 547, 1229
EarI CTCTTC 3 cut(s) 66, 547, 1229
Eco130I CCWWGG 2 cut(s) 634, 1110
Eco31I GGTCTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 640
EcoRI GAATTC 1 cut(s) 1133
EcoRII CCWGG 2 cut(s) 112, 1054
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 2 cut(s) 634, 1110
EcoT22I ATGCAT 3 cut(s) 540, 760, 1244
ErhI CCWWGG 2 cut(s) 634, 1110
FaeI CATG 4 cut(s) 10, 538, 1004, 1085
FaqI GGGAC 2 cut(s) 413, 1319
FatI CATG 4 cut(s) 6, 534, 1000, 1081
FauI CCCGC 1 cut(s) 464
FauNDI CATATG 2 cut(s) 679, 698
FblI GTMKAC 1 cut(s) 629
Fnu4HI GCNGC 2 cut(s) 294, 465
FokI GGATG 4 cut(s) 401, 539, 550, 862
Fsp4HI GCNGC 2 cut(s) 294, 465
FspBI CTAG 5 cut(s) 635, 933, 995, 1028, 1271
GlaI GCGC 1 cut(s) 497
GluI GCNGC 2 cut(s) 294, 465
HaeIII GGCC 3 cut(s) 409, 642, 1345
HhaI GCGC 1 cut(s) 498
Hin1II CATG 4 cut(s) 10, 538, 1004, 1085
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HinfI GANTC 2 cut(s) 503, 1061
HphI GGTGA 3 cut(s) 128, 326, 1070
Hpy166II GTNNAC 4 cut(s) 34, 630, 797, 1216
Hpy188I TCNGA 4 cut(s) 250, 568, 832, 948
Hpy188III TCNNGA 6 cut(s) 52, 908, 933, 1001, 1175, 1271
Hpy8I GTNNAC 4 cut(s) 34, 630, 797, 1216
Hpy99I CGWCG 2 cut(s) 354, 725
HpyCH4III ACNGT 2 cut(s) 424, 978
HpyCH4IV ACGT 2 cut(s) 352, 667
HpyF3I CTNAG 2 cut(s) 275, 1277
HpySE526I ACGT 2 cut(s) 352, 667
Hsp92II CATG 4 cut(s) 10, 538, 1004, 1085
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 4 cut(s) 837, 991, 1074, 1273
LguI GCTCTTC 1 cut(s) 547
Lsp1109I GCAGC 1 cut(s) 476
LweI GCATC 6 cut(s) 324, 517, 547, 745, 1229, 1251
MaeI CTAG 5 cut(s) 635, 933, 995, 1028, 1271
MaeII ACGT 2 cut(s) 352, 667
MaeIII GTNAC 5 cut(s) 211, 286, 487, 692, 1280
MalI GATC 4 cut(s) 839, 993, 1076, 1275
MboI GATC 4 cut(s) 837, 991, 1074, 1273
MflI RGATCY 1 cut(s) 1273
MhlI GDGCHC 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 1345
MluNI TGGCCA 1 cut(s) 1345
MmeI TCCRAC 3 cut(s) 109, 366, 1288
MnlI CCTC 8 cut(s) 6, 115, 152, 602, 883, 946, 1024, 1301
Mox20I TGGCCA 1 cut(s) 1345
Mph1103I ATGCAT 3 cut(s) 540, 760, 1244
MroXI GAANNNNTTC 1 cut(s) 1194
MscI TGGCCA 1 cut(s) 1345
MseI TTAA 6 cut(s) 93, 147, 227, 443, 455, 746
MslI CAYNNNNRTG 1 cut(s) 1247
Msp20I TGGCCA 1 cut(s) 1345
MspR9I CCNGG 2 cut(s) 114, 1056
Mva1269I GAATGC 1 cut(s) 990
MvaI CCWGG 2 cut(s) 114, 1056
MvnI CGCG 1 cut(s) 496
NdeI CATATG 2 cut(s) 679, 698
NdeII GATC 4 cut(s) 837, 991, 1074, 1273
NlaIII CATG 4 cut(s) 10, 538, 1004, 1085
NlaIV GGNNCC 3 cut(s) 408, 615, 641
NmuCI GTSAC 2 cut(s) 211, 692
NsiI ATGCAT 3 cut(s) 540, 760, 1244
NspI RCATGY 2 cut(s) 538, 1085
NspV TTCGAA 1 cut(s) 823
PagI TCATGA 1 cut(s) 1000
PciSI GCTCTTC 1 cut(s) 547
PctI GAATGC 1 cut(s) 990
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 2 cut(s) 503, 1061
PkrI GCNGC 2 cut(s) 295, 466
PshBI ATTAAT 1 cut(s) 147
PsiI TTATAA 1 cut(s) 1372
Psp1406I AACGTT 1 cut(s) 667
Psp6I CCWGG 2 cut(s) 112, 1054
PspGI CCWGG 2 cut(s) 112, 1054
PspN4I GGNNCC 3 cut(s) 408, 615, 641
PspPI GGNCC 3 cut(s) 110, 407, 640
PsuI RGATCY 1 cut(s) 1273
RsaI GTAC 2 cut(s) 975, 1299
RsaNI GTAC 2 cut(s) 974, 1298
RseI CAYNNNNRTG 1 cut(s) 1247
SapI GCTCTTC 1 cut(s) 547
SaqAI TTAA 6 cut(s) 93, 147, 227, 443, 455, 746
SatI GCNGC 2 cut(s) 294, 465
Sau3AI GATC 4 cut(s) 837, 991, 1074, 1273
Sau96I GGNCC 3 cut(s) 110, 407, 640
ScrFI CCNGG 2 cut(s) 114, 1056
SduI GDGCHC 1 cut(s) 36
SfaNI GCATC 6 cut(s) 324, 517, 547, 745, 1229, 1251
SfcI CTRYAG 1 cut(s) 1200
SfuI TTCGAA 1 cut(s) 823
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 1247
SmlI CTYRAG 3 cut(s) 740, 855, 1292
SmoI CTYRAG 3 cut(s) 740, 855, 1292
SsiI CCGC 2 cut(s) 293, 471
SspMI CTAG 5 cut(s) 635, 933, 995, 1028, 1271
StyD4I CCNGG 2 cut(s) 112, 1054
StyI CCWWGG 2 cut(s) 634, 1110
TaaI ACNGT 2 cut(s) 424, 978
TaiI ACGT 2 cut(s) 355, 670
TaqI TCGA 2 cut(s) 653, 823
TaqII GACCGA 1 cut(s) 893
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 503, 1061
Tru1I TTAA 6 cut(s) 93, 147, 227, 443, 455, 746
Tru9I TTAA 6 cut(s) 93, 147, 227, 443, 455, 746
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 211, 692
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 2 cut(s) 211, 692
TspDTI ATGAA 5 cut(s) 333, 356, 516, 591, 989
TspRI CASTG 1 cut(s) 112
VneI GTGCAC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 110
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 4 cut(s) 703, 1045, 1133, 1324
XbaI TCTAGA 2 cut(s) 932, 1270
XceI RCATGY 2 cut(s) 538, 1085
XmaJI CCTAGG 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 5 cut(s) 635, 933, 995, 1028, 1271
Zsp2I ATGCAT 3 cut(s) 540, 760, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.