Rmu_sc0002191.1_g000001

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002191.1
OG0000159
Physical Location & Seq
Reverse (-)
1 .. 2925
2925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002191.1_g000001.1.cds

Sequence Viewer

Length: 2628 bp
atggagtttgcctctggcattgctgagacagtcttggttaggctagcctcctatgctgcccaagaagtttgcttggcttggggtgcccaacttgagcttaagaagctcaataagaccttgtcagccatcaaacttgtactccaagatggagagaggaagcaaatgcagaaccccctcatcactcattggctaggaaacctcaaagatgtttgcaacgatgctgaggatgtactcgacgaatttgagttccgaaagctccgactcgaagtgctcatcaacgaccaccggagtgtcaaagcaaaggtacaccaattcttctcccgttggaacccagtcgtgtttaactttaaaatgggtcataaaatcaaagagattagagaaagactagatgagattgatgctgaaaagacaaagttttctctcattcaagttgttgaactagttgaagattgtggtgagccccaaagggcacatgttaataaaagggagacagactctttactggaaggtcatgttgttggaagagatggtgataaggaaaaaattatccttctctttgatgacaccctttcctccagtgtagataatgtttcagtcatttccatctttgggttagcagggttgggaaaaaccacactcgctaaatcagtgtataatgatactgcggtggagaagaaatttgatattagaatgtgggtatgtgtctcagaaaactttgatatccatacattagttcgtggcattattgctacaactaaacaagaatgtgctcgtgaaagtttagatcttatgaaaacggggttgcaagatattttgagagataaaaagtttttgttagtgttggacgatgtctgggatacagagtcgataggagttacaaatcagaaatggagagagttaaaaactttgttagatgttggagacagagtaagtaaaatcatcgttacaacacgtaatgaatcagtagcttcacttgtgcaccctatacataagcataagttagaaagtctttctcaggaggattccatgactttatttaaaaacaatgcatttaacgaaggagaggagtcacactatcaacatttgataaaaattggagaagacattgtgaagaagtgtggaggggttcccttatcactagctactcttgggagtttacttcactcaaaaagggagcgacatcagtggttacatgtaagagataatgaaatatggagtgtgtcagaaaacaacaacattatgactgcactaaaattgagctacaatgcactgccacctcacttgaagccttgctttgccttttgttcactttaccccaaggattatatatttggaagtcaagaaatagtccaattatggatggcacaaggcttcctcaagtcctcaagagaaaatgaagattttgaagagatgggcctagactatataaggcagttttgttccaagtctttgtttcaacttgatattgatattgatttgaagactactgtgcagttcaaaatccatgatttagtgcatgacttggcaatatcagtggcacgggtagattgctcctcaattaatttccgtccctctagtgcttttgaaaaagtccgacacgtgtcaatatcgaaaaaagacttgtctggggatgtggcaggagtcccggcattcaatctccggtcggcgaaactgcggaccattctaaatgtagatagtgaagctgggatctccaatcaatattttctaaagacatgcatcttgagattcaagtatctgcgtgcgctagatgtgcgtcgttctactcttgaggagctaccaagttccattggtaacttgattcatttaagatatctcaacctggattttaatgagaagataaaacagcttcccagttccatttgcaagctcttgaatttgcagttcttaagccttcaaggttgtgaggcacttgaggagttacccaaaggcatagggaacctgatcaatctcagatatttgaatataactacacagcagatgtattttccgaaaggagtatttagacgcctcaccttacttcaatccttgctcattgggaattgtgcgaatctgaaatctctgggagaagagatccaatacctcactaaccttcgtcaactgtggatccgttactgtggaaatctggagtccttgccacctaacatgaagaacttgactgcattccatactttggcgatcgttgagtgtaagaagcttgagttaatgaggtcgggagaaggtatcaatggtctcagatcattcgctgtcgtcacatcagatttggaggctttgcccaattggcttcaagagtctgcagacactttacagagcatctggatcggagagtgtgataatctcacggcacttccagagtggttacaaaatctcaccttgctggagcaactggcgattggggaatgccccaaattgtctgctttgccgcaagggatgcatcgcctcactgccttgagagttttgatgattagcgggtgtcctgaattgagaaaaagatgcaaaagggaaacaggagaggattggtccaagatcaaacatgtccaaaggattgaactcgatgacgaggtgcggataatatcgatgattaggaaacaaattacttgttccactact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

876

Amino Acids

99.82

Weight (kDa)

6.78

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 2191
AciI CCGC 5 cut(s) 665, 1675, 2441, 2487, 2584
AclWI GGATC 5 cut(s) 1715, 2086, 2119, 2132, 2345
AcsI RAATTY 3 cut(s) 239, 677, 1894
AcvI CACGTG 1 cut(s) 1600
AcyI GRCGYC 1 cut(s) 2026
AfaI GTAC 3 cut(s) 138, 231, 306
AfiI CCNNNNNNNGG 2 cut(s) 609, 2191
AflII CTTAAG 2 cut(s) 98, 1906
AflIII ACRYGT 6 cut(s) 472, 950, 1192, 1597, 1599, 2551
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 1 cut(s) 1839
AleI CACNNNNGTG 1 cut(s) 288
Alw21I GWGCWC 3 cut(s) 273, 772, 981
Alw26I GTCTC 5 cut(s) 20, 482, 709, 915, 2255
Alw44I GTGCAC 1 cut(s) 977
AlwI GGATC 5 cut(s) 1715, 2086, 2119, 2132, 2345
AoxI GGCC 1 cut(s) 1414
ApaLI GTGCAC 1 cut(s) 977
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 3 cut(s) 239, 677, 1894
AseI ATTAAT 1 cut(s) 1560
AspLEI GCGC 1 cut(s) 1765
AspS9I GGNCC 3 cut(s) 1414, 1677, 2538
AsuC2I CCSGG 1 cut(s) 1646
AsuHPI GGTGA 4 cut(s) 467, 542, 2023, 2380
AsuNHI GCTAGC 1 cut(s) 43
AvaII GGWCC 2 cut(s) 1677, 2538
BaeGI GKGCMC 3 cut(s) 88, 472, 981
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BamHI GGATCC 1 cut(s) 2124
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 462
BauI CACGAG 1 cut(s) 771
BbrPI CACGTG 1 cut(s) 1600
BbsI GAAGAC 2 cut(s) 1107, 1487
Bbv12I GWGCWC 3 cut(s) 273, 772, 981
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 43
BccI CCATC 6 cut(s) 134, 140, 521, 611, 1354, 1405
BceAI ACGGC 1 cut(s) 2376
BcgI CGANNNNNNTGC 2 cut(s) 2320, 2354
BciT130I CCWGG 1 cut(s) 1841
BciVI GTATCC 1 cut(s) 850
BclI TGATCA 1 cut(s) 1962
BcnI CCSGG 1 cut(s) 1646
BcoDI GTCTC 5 cut(s) 20, 482, 709, 915, 2255
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 8 cut(s) 44, 191, 386, 440, 1139, 1418, 1575, 1766
BfmI CTRYAG 1 cut(s) 2313
BfrI CTTAAG 2 cut(s) 98, 1906
BfuI GTATCC 1 cut(s) 850
BglI GCCNNNNNGGC 1 cut(s) 2299
BglII AGATCT 1 cut(s) 784
BisI GCNGC 2 cut(s) 57, 2441
BlsI GCNGC 2 cut(s) 58, 2442
Bme1390I CCNGG 2 cut(s) 1646, 1841
Bme18I GGWCC 2 cut(s) 1677, 2538
BmgT120I GGNCC 3 cut(s) 1414, 1677, 2538
BmiI GGNNCC 5 cut(s) 85, 329, 1128, 1958, 2126
BmrFI CCNGG 2 cut(s) 1646, 1841
BmrI ACTGGG 2 cut(s) 326, 1866
BmsI GCATC 7 cut(s) 208, 388, 1746, 2340, 2439, 2461, 2501
BmtI GCTAGC 1 cut(s) 47
BmuI ACTGGG 2 cut(s) 326, 1866
BoxI GACNNNNGTC 1 cut(s) 1600
BpiI GAAGAC 2 cut(s) 1107, 1487
BplI GAGNNNNNCTC 3 cut(s) 28, 479, 511
BpmI CTGGAG 3 cut(s) 559, 2165, 2417
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 8 cut(s) 113, 1361, 1369, 1762, 1808, 1952, 2237, 2488
BpuMI CCSGG 1 cut(s) 1646
Bsa29I ATCGAT 1 cut(s) 2594
BsaAI YACGTR 2 cut(s) 953, 1600
BsaHI GRCGYC 1 cut(s) 2026
BsaI GGTCTC 1 cut(s) 2255
BsaJI CCNNGG 1 cut(s) 1317
BsaWI WCCGGW 2 cut(s) 285, 1659
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 912, 942
Bsc4I CCNNNNNNNGG 2 cut(s) 609, 2191
Bse1I ACTGG 5 cut(s) 332, 507, 576, 1872, 2409
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 1841
BseCI ATCGAT 1 cut(s) 2594
BseDI CCNNGG 1 cut(s) 1317
BseGI GGATG 4 cut(s) 232, 1365, 1636, 2454
BseLI CCNNNNNNNGG 2 cut(s) 609, 2191
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 6 cut(s) 15, 213, 720, 1028, 1984, 2266
BseNI ACTGG 5 cut(s) 332, 507, 576, 1872, 2409
BseRI GAGGAG 4 cut(s) 1079, 1543, 1805, 1949
BseSI GKGCMC 3 cut(s) 88, 472, 981
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 1703
BsgI GTGCAG 2 cut(s) 1230, 1511
Bsh1285I CGRYCG 2 cut(s) 1664, 2199
BshFI GGCC 1 cut(s) 1416
BshNI GGYRCC 1 cut(s) 83
BshVI ATCGAT 1 cut(s) 2594
BsiEI CGRYCG 2 cut(s) 1664, 2199
BsiHKAI GWGCWC 3 cut(s) 273, 772, 981
BsiSI CCGG 3 cut(s) 286, 1646, 1660
BslFI GGGAC 2 cut(s) 1554, 1628
BslI CCNNNNNNNGG 2 cut(s) 609, 2191
BsmAI GTCTC 5 cut(s) 20, 482, 709, 915, 2255
BsmFI GGGAC 2 cut(s) 1554, 1628
BsmI GAATGC 3 cut(s) 1649, 2180, 2423
BsnI GGCC 1 cut(s) 1416
Bso31I GGTCTC 1 cut(s) 2255
Bsp1286I GDGCHC 6 cut(s) 88, 273, 462, 472, 772, 981
Bsp143I GATC 9 cut(s) 784, 1707, 1962, 2091, 2124, 2196, 2255, 2337, 2544
BspACI CCGC 5 cut(s) 665, 1675, 2441, 2487, 2584
BspANI GGCC 1 cut(s) 1416
BspCNI CTCAG 6 cut(s) 16, 214, 719, 1027, 1983, 2265
BspDI ATCGAT 1 cut(s) 2594
BspLI GGNNCC 5 cut(s) 85, 329, 1128, 1958, 2126
BspMAI CTGCAG 1 cut(s) 2317
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 5 cut(s) 1715, 2086, 2119, 2132, 2345
BspT107I GGYRCC 1 cut(s) 83
BspTI CTTAAG 2 cut(s) 98, 1906
BspTNI GGTCTC 1 cut(s) 2255
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 5 cut(s) 332, 507, 576, 1872, 2409
BssECI CCNNGG 1 cut(s) 1317
BssMI GATC 9 cut(s) 784, 1707, 1962, 2091, 2124, 2196, 2255, 2337, 2544
BssNI GRCGYC 1 cut(s) 2026
BssSI CACGAG 1 cut(s) 771
BssT1I CCWWGG 1 cut(s) 1317
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 1841
Bst4CI ACNGT 4 cut(s) 31, 1489, 2121, 2135
Bst6I CTCTTC 3 cut(s) 517, 1401, 2082
BstACI GRCGYC 1 cut(s) 2026
BstAFI CTTAAG 2 cut(s) 98, 1906
BstAPI GCANNNNNTGC 1 cut(s) 2449
BstBAI YACGTR 2 cut(s) 953, 1600
BstC8I GCNNGC 3 cut(s) 45, 1761, 1886
BstDEI CTNAG 6 cut(s) 24, 222, 706, 1014, 1970, 2252
BstF5I GGATG 4 cut(s) 232, 1365, 1636, 2454
BstHHI GCGC 1 cut(s) 1765
BstKTI GATC 9 cut(s) 787, 1710, 1965, 2094, 2127, 2199, 2258, 2340, 2547
BstMAI GTCTC 5 cut(s) 20, 482, 709, 915, 2255
BstMBI GATC 9 cut(s) 784, 1707, 1962, 2091, 2124, 2196, 2255, 2337, 2544
BstMCI CGRYCG 2 cut(s) 1664, 2199
BstMWI GCNNNNNNNGC 6 cut(s) 53, 83, 103, 1771, 2299, 2449
BstNI CCWGG 1 cut(s) 1841
BstNSI RCATGY 4 cut(s) 476, 1196, 1737, 2555
BstPAI GACNNNNGTC 1 cut(s) 1600
BstSCI CCNGG 2 cut(s) 1644, 1839
BstSFI CTRYAG 1 cut(s) 2313
BstSLI GKGCMC 3 cut(s) 88, 472, 981
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 2 cut(s) 1107, 1487
BstX2I RGATCY 4 cut(s) 784, 1707, 2091, 2124
BstYI RGATCY 4 cut(s) 784, 1707, 2091, 2124
Bsu15I ATCGAT 1 cut(s) 2594
BsuI GTATCC 1 cut(s) 850
BsuRI GGCC 1 cut(s) 1416
BsuTUI ATCGAT 1 cut(s) 2594
BtgZI GCGATG 1 cut(s) 2438
BtsCI GGATG 4 cut(s) 232, 1365, 1636, 2454
BtsI GCAGTG 2 cut(s) 1268, 2460
BtsIMutI CAGTG 6 cut(s) 583, 654, 1190, 1268, 1539, 2460
Cac8I GCNNGC 3 cut(s) 45, 1761, 1886
CfoI GCGC 1 cut(s) 1765
Cfr13I GGNCC 3 cut(s) 1414, 1677, 2538
ClaI ATCGAT 1 cut(s) 2594
CseI GACGC 2 cut(s) 1763, 2034
Csp6I GTAC 3 cut(s) 137, 230, 305
CspCI CAANNNNNGTGG 4 cut(s) 1263, 1298, 1515, 1550
CviAII CATG 9 cut(s) 473, 512, 1027, 1193, 1505, 1517, 1734, 2164, 2552
CviQI GTAC 3 cut(s) 137, 230, 305
DdeI CTNAG 6 cut(s) 24, 222, 706, 1014, 1970, 2252
DpnI GATC 9 cut(s) 786, 1709, 1964, 2093, 2126, 2198, 2257, 2339, 2546
DpnII GATC 9 cut(s) 784, 1707, 1962, 2091, 2124, 2196, 2255, 2337, 2544
DraI TTTAAA 2 cut(s) 349, 1039
Eam1104I CTCTTC 3 cut(s) 517, 1401, 2082
EarI CTCTTC 3 cut(s) 517, 1401, 2082
Eco130I CCWWGG 1 cut(s) 1317
Eco24I GRGCYC 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 2255
Eco32I GATATC 2 cut(s) 721, 1832
Eco47I GGWCC 2 cut(s) 1677, 2538
Eco72I CACGTG 1 cut(s) 1600
EcoRII CCWGG 1 cut(s) 1839
EcoRV GATATC 2 cut(s) 721, 1832
EcoT14I CCWWGG 1 cut(s) 1317
EcoT22I ATGCAT 3 cut(s) 1051, 1739, 2454
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 1317
FaeI CATG 9 cut(s) 476, 515, 1030, 1196, 1508, 1520, 1737, 2167, 2555
FalI AAGNNNNNCTT 2 cut(s) 1277, 1309
FaqI GGGAC 2 cut(s) 1554, 1628
FatI CATG 9 cut(s) 472, 511, 1026, 1192, 1504, 1516, 1733, 2163, 2551
FauI CCCGC 1 cut(s) 2480
FbaI TGATCA 1 cut(s) 1962
Fnu4HI GCNGC 2 cut(s) 57, 2441
FokI GGATG 4 cut(s) 239, 1372, 1643, 2461
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 2 cut(s) 57, 2441
FspBI CTAG 8 cut(s) 44, 191, 386, 440, 1139, 1418, 1575, 1766
GlaI GCGC 1 cut(s) 1764
GluI GCNGC 2 cut(s) 57, 2441
GsaI CCCAGC 1 cut(s) 1707
GsuI CTGGAG 3 cut(s) 559, 2165, 2417
HaeIII GGCC 1 cut(s) 1416
HapII CCGG 3 cut(s) 286, 1646, 1660
HgaI GACGC 2 cut(s) 1763, 2034
HhaI GCGC 1 cut(s) 1765
Hin1I GRCGYC 1 cut(s) 2026
Hin1II CATG 9 cut(s) 476, 515, 1030, 1196, 1508, 1520, 1737, 2167, 2555
Hin6I GCGC 1 cut(s) 1763
HinP1I GCGC 1 cut(s) 1763
HincII GTYRAC 1 cut(s) 2117
HindII GTYRAC 1 cut(s) 2117
HindIII AAGCTT 1 cut(s) 2213
HpaII CCGG 3 cut(s) 286, 1646, 1660
HphI GGTGA 4 cut(s) 467, 542, 2023, 2380
Hpy166II GTNNAC 5 cut(s) 307, 979, 1157, 1307, 2117
Hpy8I GTNNAC 5 cut(s) 307, 979, 1157, 1307, 2117
Hpy99I CGWCG 2 cut(s) 239, 1779
HpyAV CCTTC 6 cut(s) 500, 560, 1052, 1922, 2120, 2231
HpyCH4III ACNGT 4 cut(s) 31, 1489, 2121, 2135
HpyCH4IV ACGT 2 cut(s) 952, 1599
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 83, 103, 1771, 2299, 2449
HpyF3I CTNAG 6 cut(s) 24, 222, 706, 1014, 1970, 2252
HpySE526I ACGT 2 cut(s) 952, 1599
Hsp92I GRCGYC 1 cut(s) 2026
Hsp92II CATG 9 cut(s) 476, 515, 1030, 1196, 1508, 1520, 1737, 2167, 2555
HspAI GCGC 1 cut(s) 1763
Ksp22I TGATCA 1 cut(s) 1962
Kzo9I GATC 9 cut(s) 784, 1707, 1962, 2091, 2124, 2196, 2255, 2337, 2544
LmnI GCTCC 5 cut(s) 261, 1174, 1556, 1792, 2398
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 7 cut(s) 208, 388, 1746, 2340, 2439, 2461, 2501
MaeI CTAG 8 cut(s) 44, 191, 386, 440, 1139, 1418, 1575, 1766
MaeII ACGT 2 cut(s) 952, 1599
MaeIII GTNAC 9 cut(s) 874, 943, 1068, 1188, 1811, 1938, 2129, 2269, 2376
MalI GATC 9 cut(s) 786, 1709, 1964, 2093, 2126, 2198, 2257, 2339, 2546
MboI GATC 9 cut(s) 784, 1707, 1962, 2091, 2124, 2196, 2255, 2337, 2544
MfeI CAATTG 1 cut(s) 2296
MflI RGATCY 4 cut(s) 784, 1707, 2091, 2124
MhlI GDGCHC 6 cut(s) 88, 273, 462, 472, 772, 981
MlyI GAGTC 7 cut(s) 255, 488, 872, 1076, 1650, 2156, 2318
MmeI TCCRAC 6 cut(s) 283, 305, 499, 822, 898, 1618
Mph1103I ATGCAT 3 cut(s) 1051, 1739, 2454
MslI CAYNNNNRTG 1 cut(s) 288
MspCI CTTAAG 2 cut(s) 98, 1906
MspI CCGG 3 cut(s) 286, 1646, 1660
MspR9I CCNGG 2 cut(s) 1646, 1841
MunI CAATTG 1 cut(s) 2296
Mva1269I GAATGC 3 cut(s) 1649, 2180, 2423
MvaI CCWGG 1 cut(s) 1841
MwoI GCNNNNNNNGC 6 cut(s) 53, 83, 103, 1771, 2299, 2449
NciI CCSGG 1 cut(s) 1646
NdeII GATC 9 cut(s) 784, 1707, 1962, 2091, 2124, 2196, 2255, 2337, 2544
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 9 cut(s) 476, 515, 1030, 1196, 1508, 1520, 1737, 2167, 2555
NlaIV GGNNCC 5 cut(s) 85, 329, 1128, 1958, 2126
NmuCI GTSAC 2 cut(s) 1068, 2269
NsiI ATGCAT 3 cut(s) 1051, 1739, 2454
NspI RCATGY 4 cut(s) 476, 1196, 1737, 2555
OliI CACNNNNGTG 1 cut(s) 288
PciI ACATGT 3 cut(s) 472, 1192, 2551
PctI GAATGC 3 cut(s) 1649, 2180, 2423
PfeI GAWTC 5 cut(s) 959, 1022, 1746, 1819, 2068
PflFI GACNNNGTC 2 cut(s) 118, 848
PflMI CCANNNNNTGG 1 cut(s) 2191
PkrI GCNGC 2 cut(s) 58, 2442
Ple19I CGATCG 1 cut(s) 2199
PleI GAGTC 7 cut(s) 255, 488, 871, 1075, 1649, 2155, 2317
PmaCI CACGTG 1 cut(s) 1600
PmlI CACGTG 1 cut(s) 1600
PpsI GAGTC 7 cut(s) 255, 488, 871, 1075, 1649, 2155, 2317
Ppu21I YACGTR 2 cut(s) 953, 1600
PscI ACATGT 3 cut(s) 472, 1192, 2551
PshAI GACNNNNGTC 1 cut(s) 1600
PshBI ATTAAT 1 cut(s) 1560
Psp6I CCWGG 1 cut(s) 1839
PspCI CACGTG 1 cut(s) 1600
PspFI CCCAGC 1 cut(s) 1703
PspGI CCWGG 1 cut(s) 1839
PspN4I GGNNCC 5 cut(s) 85, 329, 1128, 1958, 2126
PspPI GGNCC 3 cut(s) 1414, 1677, 2538
PstI CTGCAG 1 cut(s) 2317
PsuI RGATCY 4 cut(s) 784, 1707, 2091, 2124
PsyI GACNNNGTC 2 cut(s) 118, 848
PvuI CGATCG 1 cut(s) 2199
RsaI GTAC 3 cut(s) 138, 231, 306
RsaNI GTAC 3 cut(s) 137, 230, 305
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 2 cut(s) 57, 2441
Sau3AI GATC 9 cut(s) 784, 1707, 1962, 2091, 2124, 2196, 2255, 2337, 2544
Sau96I GGNCC 3 cut(s) 1414, 1677, 2538
SchI GAGTC 7 cut(s) 255, 488, 872, 1076, 1650, 2156, 2318
ScrFI CCNGG 2 cut(s) 1646, 1841
SduI GDGCHC 6 cut(s) 88, 273, 462, 472, 772, 981
SfaNI GCATC 7 cut(s) 208, 388, 1746, 2340, 2439, 2461, 2501
SfcI CTRYAG 1 cut(s) 2313
SinI GGWCC 2 cut(s) 1677, 2538
SmiMI CAYNNNNRTG 1 cut(s) 288
SpeI ACTAGT 1 cut(s) 439
SsiI CCGC 5 cut(s) 665, 1675, 2441, 2487, 2584
SspI AATATT 1 cut(s) 1721
SspMI CTAG 8 cut(s) 44, 191, 386, 440, 1139, 1418, 1575, 1766
StyD4I CCNGG 2 cut(s) 1644, 1839
StyI CCWWGG 1 cut(s) 1317
TaaI ACNGT 4 cut(s) 31, 1489, 2121, 2135
TaiI ACGT 2 cut(s) 955, 1602
TaqI TCGA 6 cut(s) 234, 264, 866, 1610, 2571, 2594
TatI WGTACW 2 cut(s) 136, 229
TauI GCSGC 1 cut(s) 2443
TfiI GAWTC 5 cut(s) 959, 1022, 1746, 1819, 2068
TscAI CASTG 6 cut(s) 583, 654, 1190, 1275, 1539, 2467
TseFI GTSAC 2 cut(s) 1068, 2269
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 2 cut(s) 1068, 2269
TspDTI ATGAA 6 cut(s) 806, 972, 1221, 1410, 1811, 2180
TspGWI ACGGA 2 cut(s) 1556, 2117
TspRI CASTG 6 cut(s) 583, 654, 1190, 1275, 1539, 2467
Tth111I GACNNNGTC 2 cut(s) 118, 848
Van91I CCANNNNNTGG 1 cut(s) 2191
Vha464I CTTAAG 2 cut(s) 98, 1906
VneI GTGCAC 1 cut(s) 977
VpaK11BI GGWCC 2 cut(s) 1677, 2538
VspI ATTAAT 1 cut(s) 1560
XapI RAATTY 3 cut(s) 239, 677, 1894
XceI RCATGY 4 cut(s) 476, 1196, 1737, 2555
XspI CTAG 8 cut(s) 44, 191, 386, 440, 1139, 1418, 1575, 1766
Zsp2I ATGCAT 3 cut(s) 1051, 1739, 2454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.