Rw5G036360

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000159
Physical Location & Seq
Reverse (-)
63850777 .. 63851760
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G036360.1

Sequence Viewer

Length: 984 bp
ATGCTCAAGTCAAAGAAATTACGAACCATTCTAATTCCTGAAGATGGCCAGATGAATCAACGTTTTGTGAAGACATGCATCTCAAGATTCAAATATATGAGGGTGCTAGATCTCAGTGGTTCACCTCTTGAGGAGCTACCAAGTTCCATTGGTAGTTTGTTTCATTTGAGATTTCTCAACTTGTCTTCTAATAGTAAGATAAAAAGGCTTCCCAATTCCATCAATAAGCTGCTGAATTTGGAGACCTTGTCCTTTTGGGGTTGTGAAGCACTTGAGGAGATACCCAAAGACATAGGAAACCTGATCAACCTCCGAAGCTTGGTGATAACTACACAACAAATGTATTTGCCGAAAGGAATTAGACGCCTGACCTTACTTCAATTTTTATATTTTCATGGATGTGTCAATCTTAAATCTTTGGGAGAAGAGATCGAATTCCTCAACAACCTTCGCAATTTGTGGATTAGCAGTTGTAATAATTTGGAATCCTTGCCACCAAATATGAAACGCATGACTACTTTAGATACTTTGACTGTCGATGATTGCAAGGAGCTTCAGTTGATGATGAGATCAGGGGAAGGTCCTCAAGGTCTTCGATCATTGATTATAATGAAATCAAGTTTGGAGGCTTTGCCCCCTTGGCTTGAAGATTCTGGAGACACTCTACAGAGCATAGCAGTTTCTGAATGTCATAATCTCACGGCACTTCCGGAGTTGATAAACTTCAAATTCCTCGAGCAACTACGCATTGAAGAATGCTCCAAATTGTCAGCTTTGCCGCATGGGTTGCAGTGCCTTACTGAGTTGAGAGAATTGAACATTAAAGGGTGTACTGAATTGAGCAAAAGCTGCAAGAGGCAATTAAAAGGTGAGAATTGGTTGTCAAAGATGTCACGTCATGCAAAGATTACACTCGACTCTGATGTGGATACTGATGATGAAGAAGACGAAGATGAAGGTACACCAATGATGGACTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

327

Amino Acids

37.31

Weight (kDa)

5.87

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 26 - 217 1.5e-27 Leucine-rich repeat region
LRR_13 PF23286 42 - 188 2.1e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_R13L1-DRL21 PF25019 195 - 253 8.1e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 608
AccIII TCCGGA 1 cut(s) 709
AciI CCGC 1 cut(s) 779
AclI AACGTT 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 3 cut(s) 235, 434, 728
AcuI CTGAAG 2 cut(s) 60, 539
AcyI GRCGYC 1 cut(s) 364
AfaI GTAC 2 cut(s) 832, 961
AfiI CCNNNNNNNGG 2 cut(s) 44, 319
AgsI TTSAA 6 cut(s) 91, 380, 647, 727, 752, 817
AjiI CACGTC 1 cut(s) 896
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AluBI AGCT 6 cut(s) 136, 229, 318, 553, 773, 849
AluI AGCT 6 cut(s) 136, 229, 318, 553, 773, 849
Alw26I GTCTC 2 cut(s) 236, 651
AlwNI CAGNNNCTG 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 734
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 229, 849
ApoI RAATTY 3 cut(s) 235, 434, 728
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 3 cut(s) 114, 334, 881
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 1 cut(s) 581
BalI TGGCCA 1 cut(s) 48
BbsI GAAGAC 4 cut(s) 77, 177, 584, 951
BbvI GCAGC 2 cut(s) 216, 836
BccI CCATC 3 cut(s) 38, 227, 964
BceAI ACGGC 1 cut(s) 717
BciVI GTATCC 1 cut(s) 922
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 236, 651
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 2 cut(s) 665, 976
BfuI GTATCC 1 cut(s) 922
BglI GCCNNNNNGGC 1 cut(s) 640
BglII AGATCT 1 cut(s) 109
BisI GCNGC 3 cut(s) 230, 779, 850
BlsI GCNGC 3 cut(s) 231, 780, 851
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 734
BmgBI CACGTC 1 cut(s) 896
BmgT120I GGNCC 1 cut(s) 581
BmsI GCATC 1 cut(s) 87
BpiI GAAGAC 4 cut(s) 77, 177, 584, 951
BpmI CTGGAG 1 cut(s) 675
BpuEI CTTGAG 4 cut(s) 67, 149, 293, 570
BsaHI GRCGYC 1 cut(s) 364
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 638
BsaWI WCCGGW 1 cut(s) 709
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 542, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 319
BseAI TCCGGA 1 cut(s) 709
BseDI CCNNGG 1 cut(s) 638
BseGI GGATG 1 cut(s) 404
BseLI CCNNNNNNNGG 2 cut(s) 44, 319
BseMII CTCAG 2 cut(s) 127, 792
BseRI GAGGAG 2 cut(s) 146, 290
BseXI GCAGC 2 cut(s) 216, 836
BshFI GGCC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 1 cut(s) 710
BslI CCNNNNNNNGG 2 cut(s) 44, 319
BsmAI GTCTC 2 cut(s) 236, 651
BsmI GAATGC 1 cut(s) 761
BsnI GGCC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 734
Bsp13I TCCGGA 1 cut(s) 709
Bsp143I GATC 5 cut(s) 109, 303, 429, 569, 596
BspACI CCGC 1 cut(s) 779
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 126, 793
BspEI TCCGGA 1 cut(s) 709
BspMAI CTGCAG 1 cut(s) 980
BspTNI GGTCTC 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 638
BssMI GATC 5 cut(s) 109, 303, 429, 569, 596
BssNI GRCGYC 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 638
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 1 cut(s) 420
BstACI GRCGYC 1 cut(s) 364
BstAPI GCANNNNNTGC 2 cut(s) 787, 849
BstDEI CTNAG 2 cut(s) 113, 801
BstF5I GGATG 1 cut(s) 404
BstKTI GATC 5 cut(s) 112, 306, 432, 572, 599
BstMAI GTCTC 2 cut(s) 236, 651
BstMBI GATC 5 cut(s) 109, 303, 429, 569, 596
BstMWI GCNNNNNNNGC 3 cut(s) 640, 787, 849
BstNSI RCATGY 1 cut(s) 78
BstSFI CTRYAG 2 cut(s) 665, 976
BstV1I GCAGC 2 cut(s) 216, 836
BstV2I GAAGAC 4 cut(s) 77, 177, 584, 951
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuI GTATCC 1 cut(s) 922
BsuRI GGCC 1 cut(s) 48
BtrI CACGTC 1 cut(s) 896
BtsCI GGATG 1 cut(s) 404
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 2 cut(s) 121, 797
CaiI CAGNNNCTG 1 cut(s) 683
Cfr13I GGNCC 1 cut(s) 581
CseI GACGC 1 cut(s) 372
Csp6I GTAC 2 cut(s) 831, 960
CviAII CATG 5 cut(s) 75, 395, 511, 782, 899
CviQI GTAC 2 cut(s) 831, 960
DdeI CTNAG 2 cut(s) 113, 801
DpnI GATC 5 cut(s) 111, 305, 431, 571, 598
DpnII GATC 5 cut(s) 109, 303, 429, 569, 596
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 638
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 2 cut(s) 60, 539
Eco88I CYCGRG 1 cut(s) 734
EcoO109I RGGNCCY 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 638
EcoT22I ATGCAT 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 638
FaeI CATG 5 cut(s) 78, 398, 514, 785, 902
FatI CATG 5 cut(s) 74, 394, 510, 781, 898
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 230, 779, 850
FokI GGATG 1 cut(s) 411
Fsp4HI GCNGC 3 cut(s) 230, 779, 850
FspBI CTAG 1 cut(s) 107
GluI GCNGC 3 cut(s) 230, 779, 850
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 710
HgaI GACGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 364
Hin1II CATG 5 cut(s) 78, 398, 514, 785, 902
HindIII AAGCTT 1 cut(s) 316
HinfI GANTC 5 cut(s) 55, 87, 485, 650, 917
HpaII CCGG 1 cut(s) 710
HphI GGTGA 3 cut(s) 114, 334, 881
Hpy166II GTNNAC 3 cut(s) 122, 831, 962
Hpy188I TCNGA 3 cut(s) 314, 685, 922
Hpy188III TCNNGA 5 cut(s) 38, 84, 128, 654, 710
Hpy8I GTNNAC 3 cut(s) 122, 831, 962
HpyAV CCTTC 3 cut(s) 458, 572, 950
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 2 cut(s) 61, 895
HpyCH4V TGCA 6 cut(s) 78, 546, 790, 852, 902, 978
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 787, 849
HpyF3I CTNAG 2 cut(s) 113, 801
HpySE526I ACGT 2 cut(s) 61, 895
Hsp92I GRCGYC 1 cut(s) 364
Hsp92II CATG 5 cut(s) 78, 398, 514, 785, 902
Kpn2I TCCGGA 1 cut(s) 709
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 5 cut(s) 109, 303, 429, 569, 596
LmnI GCTCC 3 cut(s) 133, 550, 764
LpnPI CCDG 7 cut(s) 51, 62, 314, 380, 558, 639, 723
Lsp1109I GCAGC 2 cut(s) 216, 836
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 61, 895
MaeIII GTNAC 1 cut(s) 891
MalI GATC 5 cut(s) 111, 305, 431, 571, 598
MboI GATC 5 cut(s) 109, 303, 429, 569, 596
MflI RGATCY 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 911
Mox20I TGGCCA 1 cut(s) 48
Mph1103I ATGCAT 1 cut(s) 80
MroI TCCGGA 1 cut(s) 709
MscI TGGCCA 1 cut(s) 48
MseI TTAA 3 cut(s) 411, 822, 863
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 761
MwoI GCNNNNNNNGC 3 cut(s) 640, 787, 849
NdeII GATC 5 cut(s) 109, 303, 429, 569, 596
NlaIII CATG 5 cut(s) 78, 398, 514, 785, 902
NmuCI GTSAC 1 cut(s) 891
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 734
PctI GAATGC 1 cut(s) 761
PfeI GAWTC 4 cut(s) 55, 87, 485, 650
PflFI GACNNNGTC 1 cut(s) 247
PkrI GCNGC 3 cut(s) 231, 780, 851
PleI GAGTC 1 cut(s) 911
PpsI GAGTC 1 cut(s) 911
PpuMI RGGWCCY 1 cut(s) 581
PsiI TTATAA 1 cut(s) 608
Psp1406I AACGTT 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 581
PspPI GGNCC 1 cut(s) 581
PspPPI RGGWCCY 1 cut(s) 581
PspXI VCTCGAGB 1 cut(s) 734
PstI CTGCAG 1 cut(s) 980
PstNI CAGNNNCTG 1 cut(s) 683
PsuI RGATCY 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 247
RsaI GTAC 2 cut(s) 832, 961
RsaNI GTAC 2 cut(s) 831, 960
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 3 cut(s) 411, 822, 863
SatI GCNGC 3 cut(s) 230, 779, 850
Sau3AI GATC 5 cut(s) 109, 303, 429, 569, 596
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 911
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 2 cut(s) 665, 976
Sfr274I CTCGAG 1 cut(s) 734
SinI GGWCC 1 cut(s) 581
SlaI CTCGAG 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 6 cut(s) 5, 82, 128, 272, 585, 734
SmoI CTYRAG 6 cut(s) 5, 82, 128, 272, 585, 734
SsiI CCGC 1 cut(s) 779
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 638
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 2 cut(s) 64, 898
TaqI TCGA 5 cut(s) 432, 537, 595, 735, 915
TatI WGTACW 1 cut(s) 830
TauI GCSGC 1 cut(s) 781
TfiI GAWTC 4 cut(s) 55, 87, 485, 650
Tru1I TTAA 3 cut(s) 411, 822, 863
Tru9I TTAA 3 cut(s) 411, 822, 863
TscAI CASTG 2 cut(s) 121, 797
TseFI GTSAC 1 cut(s) 891
TseI GCWGC 2 cut(s) 229, 849
Tsp45I GTSAC 1 cut(s) 891
TspDTI ATGAA 7 cut(s) 68, 152, 383, 518, 626, 954, 969
TspRI CASTG 2 cut(s) 121, 797
Tth111I GACNNNGTC 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 3 cut(s) 235, 434, 728
XceI RCATGY 1 cut(s) 78
XhoI CTCGAG 1 cut(s) 734
XspI CTAG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.