RchiOBHm_Chr5g0009021

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000159
Physical Location & Seq
Reverse (-)
5961369 .. 5961731
363 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28994

Sequence Viewer

Length: 321 bp
ATGGGGATATCAATTACGAAGTGGATTGAATTGAAAGCTTTACTAAATATTGGTGCTCGGGGTAGTAAAATCATTGTAACAACACGCAATATGTCCGTTGTTTCGCTTTTGGGATCCGTGGATTACCAGCACCCTTTAGAAGGTCTTTCTCACGAGGATTGTATGTCTTTGTTTGTAGAAAGGGCATTTAGGAAAGAAGAAGAAAAAAACTTTCCTCACTTGATGGAAGTTGCAAACAATATTGTGAAGAAGTGTGGAGGGGTTCCTCTGGCTGTGACCATTCTAGGGGGCATGCTCTATTTGAAAAAGGGAACTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

106

Amino Acids

11.69

Weight (kDa)

9.0

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 7 - 67 1.6e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000159)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22800 FvH4_1g23030 FvH4_2g17621 FvH4_2g17623 FvH4_2g17640 FvH4_3g16170 FvH4_4g15173 FvH4_4g15190 FvH4_5g16900 FvH4_6g51550 FvH4_6g51570 FvH4_6g51610 FvH4_6g51610 FvH4_7g31270 FvH4_7g31321 FvH4_7g31321
malus_domestica MD06G1096400.v1.1 MD14G1231900.v1.1
prunus_persica Prupe.5G111200_v2.0.a1 Prupe.5G227800_v2.0.a1
pyrus_communis pycom06g09270
rosa_chinensis RchiOBHm_Chr2g0116281 RchiOBHm_Chr2g0116321 RchiOBHm_Chr2g0116651 RchiOBHm_Chr2g0116681 RchiOBHm_Chr2g0116691 RchiOBHm_Chr2g0116761 RchiOBHm_Chr2g0116981 RchiOBHm_Chr2g0117271 RchiOBHm_Chr2g0117561 RchiOBHm_Chr2g0117671 RchiOBHm_Chr5g0009011 RchiOBHm_Chr5g0009021 RchiOBHm_Chr5g0009031 RchiOBHm_Chr5g0051501 RchiOBHm_Chr5g0059261 RchiOBHm_Chr7g0179121 RchiOBHm_Chr7g0179151 RchiOBHm_Chr7g0180011 RchiOBHm_Chr7g0180031
rosa_laevigata RLG00000018253 RLG00000018256 RLG00000018298 RLG00000018318 RLG00000018339 RLG00000018341 RLG00000018355 RLG00000018360 RLG00000018363 RLG00000018364 RLG00000021097
rosa_multiflora Rmu_co8108666.1_g000001 Rmu_co8113786.1_g000001 Rmu_co8303371.1_g000001 Rmu_co8353409.1_g000001 Rmu_sc0000888.1_g000020 Rmu_sc0001035.1_g000046 Rmu_sc0001617.1_g000028 Rmu_sc0001617.1_g000031 Rmu_sc0002009.1_g000005 Rmu_sc0002009.1_g000024 Rmu_sc0002034.1_g000013 Rmu_sc0002191.1_g000001 Rmu_sc0002983.1_g000027 Rmu_sc0003499.1_g000025 Rmu_sc0004602.1_g000012 Rmu_sc0004795.1_g000010 Rmu_sc0004795.1_g000017 Rmu_sc0004888.1_g000050 Rmu_sc0004888.1_g000052 Rmu_sc0004888.1_g000054 Rmu_sc0004942.1_g000014 Rmu_sc0004942.1_g000015 Rmu_sc0004942.1_g000017 Rmu_sc0004942.1_g000020 Rmu_sc0005792.1_g000003 Rmu_sc0006184.1_g000014 Rmu_sc0006730.1_g000011 Rmu_sc0006730.1_g000012 Rmu_sc0011574.1_g000001 Rmu_sc0011574.1_g000002 Rmu_sc0011969.1_g000003 Rmu_sc0016190.1_g000001 Rmu_sc0016190.1_g000002 Rmu_sc0020362.1_g000003 Rmu_sc0020362.1_g000004 Rmu_sc0020362.1_g000005 Rmu_sc0025557.1_g000002 Rmu_sc0031855.1_g000001 Rmu_ssc0000119.1_g000002 Rmu_ssc0000119.1_g000006 Rmu_ssc0000119.1_g000008 Rmu_ssc0000119.1_g000015 Rmu_ssc0000119.1_g000018 Rmu_ssc0000119.1_g000023 Rmu_ssc0000238.1_g000010 Rmu_ssc0000238.1_g000014
rosa_roxburghii Rroxscaffold_1G00067000 Rroxscaffold_1G00067640 Rroxscaffold_2G00126270 Rroxscaffold_2G00126830 Rroxscaffold_2G00126970 Rroxscaffold_2G00127350 Rroxscaffold_3G00273210 Rroxscaffold_3G00273240 Rroxscaffold_3G00274260 Rroxscaffold_3G00274370 Rroxscaffold_4G00321190
rosa_rugosa Rorug02G0205600 Rorug02G0209300 Rorug02G0209500 Rorug02G0211700 Rorug02G0212300 Rorug02G0213200 Rorug02G0213200 Rorug02G0213400 Rorug03G0352400 Rorug03G0352500 Rorug04G0440900 Rorug05G0171300 Rorug05G0322100 Rorug06G0421200 Rorug06G0421400 Rorug06G0421500 Rorug06G0421600 Rorug06G0429800 Rorug06G0430000 Rorug06G0430100
rosa_samantha Rh1DG100600 Rh2AG260900 Rh2AG261000 Rh2AG263400 Rh2AG263600 Rh2AG263900 Rh2AG265300 Rh2AG269300 Rh2AG269700 Rh2BG281000 Rh2CG267300 Rh2CG267500 Rh2CG270600 Rh2CG270700 Rh2CG271100 Rh2DG274100 Rh2DG290500 Rh2DG291600 Rh4DG089700 Rh5CG077900 Rh5CG421700 Rh5DG065900 Rh5DG066000 Rh7BG020200 Rh7BG020700 Rh7BG029700 Rh7BG029800 Rh7BG029900 Rh7BG030100 Rh7CG031400 Rh7CG031900 Rh7DG021300 Rh7DG030600 Rh7DG030900
rosa_wichuraiana Rw0G008860 Rw1G007590 Rw2G020460 Rw2G020740 Rw2G020770 Rw2G020820 Rw2G020920 Rw2G021100 Rw2G021120 Rw2G021260 Rw2G021280 Rw2G021290 Rw5G006520 Rw5G028690 Rw5G036360 Rw5G036370 Rw7G001730 Rw7G002430 Rw7G002450 Rw7G002470 Rw7G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 108, 121
AfiI CCNNNNNNNGG 2 cut(s) 140, 285
AgsI TTSAA 3 cut(s) 29, 34, 304
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 2 cut(s) 108, 121
Ama87I CYCGRG 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 57
BamHI GGATCC 1 cut(s) 113
BauI CACGAG 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 58
BccI CCATC 1 cut(s) 217
BfaI CTAG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 115, 264
BsaAI YACGTR 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 285
BseDI CCNNGG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 140, 285
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 140, 285
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 115, 264
BspPI GGATC 2 cut(s) 108, 121
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 113
BssSI CACGAG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 138
BstKTI GATC 1 cut(s) 116
BstMBI GATC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 293
CviAII CATG 1 cut(s) 292
CviJI RGCY 2 cut(s) 38, 272
CviKI_1 RGCY 2 cut(s) 38, 272
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 138
EcoRV GATATC 1 cut(s) 9
FaeI CATG 1 cut(s) 295
FaiI YATR 3 cut(s) 92, 164, 293
FatI CATG 1 cut(s) 291
FspBI CTAG 1 cut(s) 284
Hin1II CATG 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 1 cut(s) 113
LpnPI CCDG 2 cut(s) 140, 254
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 76, 274
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 3 cut(s) 209, 212, 259
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 12, 29
MnlI CCTC 4 cut(s) 148, 225, 251, 276
NdeII GATC 1 cut(s) 113
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 2 cut(s) 115, 264
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 295
PaeI GCATGC 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 115, 264
PsuI RGATCY 1 cut(s) 113
Sau3AI GATC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 58
SetI ASST 3 cut(s) 40, 145, 320
SphI GCATGC 1 cut(s) 295
Sse9I AATT 2 cut(s) 12, 29
SspI AATATT 2 cut(s) 49, 241
SspMI CTAG 1 cut(s) 284
TaiI ACGT 1 cut(s) 320
TasI AATT 2 cut(s) 12, 29
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspGWI ACGGA 2 cut(s) 85, 106
XagI CCTNNNNNAGG 1 cut(s) 138
XceI RCATGY 1 cut(s) 295
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.