AT3G10710

pectinesterase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
3352077 .. 3354375
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10710.1

Sequence Viewer

Length: 1686 bp
ATGTCCTCTCCTTACGGCAAAGTCGACGAGCGTGAACATGTAAGGCTCGAAGCTCGTCGTAAGACGAGAAAGAACATCGCAATCATCGCTGTATCACTAGTCATTCTTGCCGGAATCGTGATCGGAGCTGTGTTTGGAACCATGGCTCACAAGAAGTCACCAGAGACAGTGGAGACTAATAACAACGGAGACTCAATCTCCGTTTCCGTTAAAGCCGTTTGCGACGTTACGTTGCATAAAGAAAAATGCTTCGAAACCCTCGGATCAGCTCCAAACGCAAGCAGTCTCAATCCAGAAGAGCTCTTCAGATACGCAGTCAAAATCACAATCGCCGAAGTTTCAAAAGCTATCAACGCTTTCTCTTCATCCTTAGGCGATGAAAAGAACAACATCACCATGAACGCTTGCGCTGAGCTTCTTGACCTAACGATAGATAACCTCAACAACACGTTAACCTCATCATCAAACGGTGATGTCACGGTTCCTGAGCTAGTCGATGATCTCCGTACATGGCTGAGTTCAGCCGGGACGTATCAACGGACGTGCGTGGAAACGTTGGCTCCAGATATGAGGCCGTTCGGCGAAAGTCATCTCAAGAACTCAACGGAGTTGACGAGTAACGCACTAGCGATCATCACATGGCTCGGGAAGATCGCTGACTCTTTCAAACTCCGGAGGCGTTTGTTAACAACTGCAGACGTGGAGGTGGACTTCCACGCGGGTCGGAGATTGTTGCAGAGCACGGATTTGAGGAAAGTGGCGGATATTGTGGTGGCGAAGGATGGTTCAGGGAAGTATAGAACGATAAAGAGGGCTTTACAAGATGTGCCAGAGAAGAGTGAGAAGAGGACGATTATATATGTGAAGAAAGGAGTTTATTTTGAGAATGTGAAGGTGGAGAAGAAGATGTGGAATGTTATTGTGGTTGGAGATGGCGAGAGCAAGAGTATTGTCTCTGGTAGACTTAATGTCATCGATGGAACTCCCACTTTTAAGACCGCCACATTCGCTGTGTTTGGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACACAGCTGGTCCATCCAAACATCAAGCTGTTGCTCTAATGGTAAGCGCAGATCTCACAGCATTTTACCGTTGCACGATGAACGCATACCAAGACACGCTTTACGTTCATGCACAACGCCAATTCTACCGTGAATGCACCATTATCGGAACAGTAGATTTCATCTTTGGTAACTCAGCTTCAGTTCTCCAAAGCTGCCGGATTCTCCCTCGCCGACCAATGAAAGGACAACAAAACACAATCACGGCTCAAGGACGTACTGATCCGAACATGAACACAGGAATCTCGATTCACCGTTGTAACATCTCTCCACTCGGTGACCTAACCGATGTTATGACGTTTCTAGGTCGACCATGGAAGAATTTCTCGACGACGGTTATAATGGACTCGTATTTGCATGGTTTTATTGACCGGAAAGGCTGGTTACCGTGGACCGGAGATTCTGCGCCGGATACTATATTTTACGGTGAGTATAAGAATACCGGTCCTGGTGCATCGACGAAGAATAGGGTTAAGTGGAAGGGTTTGAGGTTTCTTAGTACGAAGGAAGCGAATAGGTTTACGGTGAAACCTTTCATCGACGGTGGAAGATGGCTTCCGGCGACGAAAGTGCCGTTCAGGTCCGGTCTCTGA

Protein Analysis

561

Amino Acids

62.1

Weight (kDa)

9.43

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 69 - 211 1.7e-27 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 255 - 546 8.9e-144 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013785)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1433
AccI GTMKAC 3 cut(s) 24, 961, 1402
AccII CGCG 1 cut(s) 719
AccIII TCCGGA 1 cut(s) 672
AciI CCGC 3 cut(s) 719, 761, 999
AclI AACGTT 1 cut(s) 554
AclWI GGATC 2 cut(s) 271, 1310
AcsI RAATTY 1 cut(s) 1414
AcuI CTGAAG 2 cut(s) 289, 1218
AdeI CACNNNGTG 1 cut(s) 1370
AfaI GTAC 3 cut(s) 508, 1312, 1594
AfiI CCNNNNNNNGG 2 cut(s) 1277, 1487
AflIII ACRYGT 2 cut(s) 37, 447
AgeI ACCGGT 1 cut(s) 1535
AgsI TTSAA 2 cut(s) 342, 667
AhdI GACNNNNNGTC 1 cut(s) 968
AhlI ACTAGT 1 cut(s) 97
AjiI CACGTC 2 cut(s) 543, 700
AjnI CCWGG 1 cut(s) 1540
Alw21I GWGCWC 2 cut(s) 303, 743
Alw26I GTCTC 6 cut(s) 158, 167, 183, 290, 958, 1032
AlwI GGATC 2 cut(s) 271, 1310
Ama87I CYCGRG 1 cut(s) 644
Aor13HI TCCGGA 1 cut(s) 672
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 1 cut(s) 1248
ApoI RAATTY 1 cut(s) 1414
AsiGI ACCGGT 1 cut(s) 1535
Asp700I GAANNNNTTC 2 cut(s) 1415, 1625
AspLEI GCGC 3 cut(s) 410, 1103, 1501
AspS9I GGNCC 4 cut(s) 1064, 1485, 1538, 1674
AsuC2I CCSGG 1 cut(s) 526
AsuHPI GGTGA 7 cut(s) 150, 385, 482, 1337, 1382, 1532, 1630
AsuII TTCGAA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 644
AvaII GGWCC 4 cut(s) 1064, 1485, 1538, 1674
AxyI CCTNAGG 1 cut(s) 370
BanII GRGCYC 1 cut(s) 303
BarI GAAGNNNNNNTAC 2 cut(s) 1216, 1248
Bbv12I GWGCWC 2 cut(s) 303, 743
BbvI GCAGC 1 cut(s) 1235
BccI CCATC 5 cut(s) 776, 926, 971, 1075, 1638
BceAI ACGGC 5 cut(s) 31, 200, 559, 1314, 1651
BcgI CGANNNNNNTGC 4 cut(s) 1180, 1214, 1645, 1679
BciT130I CCWGG 1 cut(s) 1542
BciVI GTATCC 1 cut(s) 1498
BcnI CCSGG 1 cut(s) 526
BcoDI GTCTC 6 cut(s) 158, 167, 183, 290, 958, 1032
BcuI ACTAGT 1 cut(s) 97
BfaI CTAG 4 cut(s) 98, 491, 626, 1397
BfmI CTRYAG 1 cut(s) 693
BfuI GTATCC 1 cut(s) 1498
BglII AGATCT 1 cut(s) 1105
BisI GCNGC 1 cut(s) 1249
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 1250
Bme1390I CCNGG 2 cut(s) 526, 1542
Bme18I GGWCC 4 cut(s) 1064, 1485, 1538, 1674
BmeRI GACNNNNNGTC 1 cut(s) 968
BmeT110I CYCGRG 1 cut(s) 644
BmgBI CACGTC 2 cut(s) 543, 700
BmgT120I GGNCC 4 cut(s) 1064, 1485, 1538, 1674
BmiI GGNNCC 3 cut(s) 139, 483, 561
BmrFI CCNGG 2 cut(s) 526, 1542
BmsI GCATC 1 cut(s) 1556
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 486
Bpu1102I GCTNAGC 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 2 cut(s) 578, 1287
BpuMI CCSGG 1 cut(s) 526
Bsa29I ATCGAT 1 cut(s) 975
BsaJI CCNNGG 4 cut(s) 141, 259, 1406, 1481
BsaWI WCCGGW 5 cut(s) 672, 1464, 1487, 1535, 1676
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 544, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 1277, 1487
Bse118I RCCGGY 1 cut(s) 1535
Bse21I CCTNAGG 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 672
BseBI CCWGG 1 cut(s) 1542
BseCI ATCGAT 1 cut(s) 975
BseDI CCNNGG 4 cut(s) 141, 259, 1406, 1481
BseGI GGATG 3 cut(s) 365, 787, 1067
BseLI CCNNNNNNNGG 2 cut(s) 1277, 1487
BseMII CTCAG 4 cut(s) 402, 477, 506, 1242
BseXI GCAGC 1 cut(s) 1235
Bsh1236I CGCG 1 cut(s) 719
BshFI GGCC 1 cut(s) 574
BshTI ACCGGT 1 cut(s) 1535
BshVI ATCGAT 1 cut(s) 975
BsiHKAI GWGCWC 2 cut(s) 303, 743
BsiHKCI CYCGRG 1 cut(s) 644
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 2 cut(s) 1277, 1487
BsmAI GTCTC 6 cut(s) 158, 167, 183, 290, 958, 1032
BsmFI GGGAC 1 cut(s) 541
BsmI GAATGC 1 cut(s) 1193
BsnI GGCC 1 cut(s) 574
BsoBI CYCGRG 1 cut(s) 644
Bsp119I TTCGAA 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 303, 743
Bsp13I TCCGGA 1 cut(s) 672
Bsp143I GATC 7 cut(s) 120, 263, 499, 630, 651, 1105, 1315
Bsp1720I GCTNAGC 1 cut(s) 411
Bsp19I CCATGG 2 cut(s) 141, 1406
BspACI CCGC 3 cut(s) 719, 761, 999
BspANI GGCC 1 cut(s) 574
BspCNI CTCAG 4 cut(s) 403, 478, 507, 1241
BspDI ATCGAT 1 cut(s) 975
BspEI TCCGGA 1 cut(s) 672
BspFNI CGCG 1 cut(s) 719
BspLI GGNNCC 3 cut(s) 139, 483, 561
BspMAI CTGCAG 1 cut(s) 697
BspPI GGATC 2 cut(s) 271, 1310
BspQI GCTCTTC 2 cut(s) 291, 308
BspT104I TTCGAA 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 1535
BssAI RCCGGY 1 cut(s) 1535
BssECI CCNNGG 4 cut(s) 141, 259, 1406, 1481
BssMI GATC 7 cut(s) 120, 263, 499, 630, 651, 1105, 1315
BssT1I CCWWGG 2 cut(s) 141, 1406
Bst2UI CCWGG 1 cut(s) 1542
Bst6I CTCTTC 5 cut(s) 291, 308, 367, 830, 839
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 280, 406
BstDEI CTNAG 6 cut(s) 370, 411, 486, 515, 1228, 1589
BstDSI CCRYGG 3 cut(s) 141, 1406, 1481
BstEII GGTNACC 2 cut(s) 1370, 1476
BstF5I GGATG 3 cut(s) 365, 787, 1067
BstFNI CGCG 1 cut(s) 719
BstHHI GCGC 3 cut(s) 410, 1103, 1501
BstKTI GATC 7 cut(s) 123, 266, 502, 633, 654, 1108, 1318
BstMAI GTCTC 6 cut(s) 158, 167, 183, 290, 958, 1032
BstMBI GATC 7 cut(s) 120, 263, 499, 630, 651, 1105, 1315
BstMWI GCNNNNNNNGC 4 cut(s) 86, 275, 353, 1007
BstNI CCWGG 1 cut(s) 1542
BstNSI RCATGY 1 cut(s) 41
BstPI GGTNACC 2 cut(s) 1370, 1476
BstSCI CCNGG 2 cut(s) 524, 1540
BstSFI CTRYAG 1 cut(s) 693
BstUI CGCG 1 cut(s) 719
BstV1I GCAGC 1 cut(s) 1235
BstX2I RGATCY 1 cut(s) 1105
BstYI RGATCY 1 cut(s) 1105
Bsu15I ATCGAT 1 cut(s) 975
Bsu36I CCTNAGG 1 cut(s) 370
BsuI GTATCC 1 cut(s) 1498
BsuRI GGCC 1 cut(s) 574
BsuTUI ATCGAT 1 cut(s) 975
BtgI CCRYGG 3 cut(s) 141, 1406, 1481
BtgZI GCGATG 3 cut(s) 61, 70, 390
BtrI CACGTC 2 cut(s) 543, 700
BtsCI GGATG 3 cut(s) 365, 787, 1067
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 280, 406
CfoI GCGC 3 cut(s) 410, 1103, 1501
Cfr10I RCCGGY 1 cut(s) 1535
Cfr13I GGNCC 4 cut(s) 1064, 1485, 1538, 1674
ClaI ATCGAT 1 cut(s) 975
Csp6I GTAC 3 cut(s) 507, 1311, 1593
CspAI ACCGGT 1 cut(s) 1535
CviQI GTAC 3 cut(s) 507, 1311, 1593
DdeI CTNAG 6 cut(s) 370, 411, 486, 515, 1228, 1589
DpnI GATC 7 cut(s) 122, 265, 501, 632, 653, 1107, 1317
DpnII GATC 7 cut(s) 120, 263, 499, 630, 651, 1105, 1315
DraIII CACNNNGTG 1 cut(s) 1370
DriI GACNNNNNGTC 1 cut(s) 968
Eam1104I CTCTTC 5 cut(s) 291, 308, 367, 830, 839
Eam1105I GACNNNNNGTC 1 cut(s) 968
EarI CTCTTC 5 cut(s) 291, 308, 367, 830, 839
EciI GGCGGA 1 cut(s) 776
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 141, 1406
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 4 cut(s) 1064, 1485, 1538, 1674
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 289, 1218
Eco81I CCTNAGG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 644
Eco91I GGTNACC 2 cut(s) 1370, 1476
EcoICRI GAGCTC 1 cut(s) 301
EcoO65I GGTNACC 2 cut(s) 1370, 1476
EcoRII CCWGG 1 cut(s) 1540
EcoT14I CCWWGG 2 cut(s) 141, 1406
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 2 cut(s) 141, 1406
FalI AAGNNNNNCTT 2 cut(s) 1137, 1169
FaqI GGGAC 1 cut(s) 541
FauI CCCGC 1 cut(s) 712
FblI GTMKAC 3 cut(s) 24, 961, 1402
Fnu4HI GCNGC 1 cut(s) 1249
FokI GGATG 3 cut(s) 352, 794, 1054
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 1249
FspBI CTAG 4 cut(s) 98, 491, 626, 1397
GlaI GCGC 3 cut(s) 409, 1102, 1500
GluI GCNGC 1 cut(s) 1249
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 1 cut(s) 574
HhaI GCGC 3 cut(s) 410, 1103, 1501
Hin6I GCGC 3 cut(s) 408, 1101, 1499
HinP1I GCGC 3 cut(s) 408, 1101, 1499
HincII GTYRAC 5 cut(s) 25, 453, 612, 687, 1403
HindII GTYRAC 5 cut(s) 25, 453, 612, 687, 1403
HinfI GANTC 8 cut(s) 114, 191, 659, 1255, 1335, 1342, 1439, 1493
HpaI GTTAAC 2 cut(s) 453, 687
HphI GGTGA 7 cut(s) 150, 385, 482, 1337, 1382, 1532, 1630
Hpy188I TCNGA 7 cut(s) 125, 263, 308, 726, 1202, 1320, 1685
Hpy99I CGWCG 8 cut(s) 29, 60, 227, 1426, 1429, 1555, 1637, 1660
HpyAV CCTTC 4 cut(s) 772, 886, 1567, 1591
HpyCH4V TGCA 8 cut(s) 235, 695, 736, 1128, 1166, 1191, 1450, 1547
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 275, 353, 1007
HpyF3I CTNAG 6 cut(s) 370, 411, 486, 515, 1228, 1589
HspAI GCGC 3 cut(s) 408, 1101, 1499
Kpn2I TCCGGA 1 cut(s) 672
KspAI GTTAAC 2 cut(s) 453, 687
Kzo9I GATC 7 cut(s) 120, 263, 499, 630, 651, 1105, 1315
LguI GCTCTTC 2 cut(s) 291, 308
LmnI GCTCC 3 cut(s) 125, 274, 565
Lsp1109I GCAGC 1 cut(s) 1235
LweI GCATC 1 cut(s) 1556
MaeI CTAG 4 cut(s) 98, 491, 626, 1397
MaeIII GTNAC 8 cut(s) 156, 226, 475, 617, 1223, 1352, 1370, 1476
MalI GATC 7 cut(s) 122, 265, 501, 632, 653, 1107, 1317
MboI GATC 7 cut(s) 120, 263, 499, 630, 651, 1105, 1315
MflI RGATCY 1 cut(s) 1105
MhlI GDGCHC 2 cut(s) 303, 743
MluCI AATT 2 cut(s) 1175, 1414
MlyI GAGTC 3 cut(s) 185, 653, 1433
MmeI TCCRAC 2 cut(s) 704, 907
MroI TCCGGA 1 cut(s) 672
MroXI GAANNNNTTC 2 cut(s) 1415, 1625
MseI TTAA 6 cut(s) 210, 452, 686, 966, 993, 1566
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 1061
MspR9I CCNGG 2 cut(s) 526, 1542
Mva1269I GAATGC 1 cut(s) 1193
MvaI CCWGG 1 cut(s) 1542
MvnI CGCG 1 cut(s) 719
MwoI GCNNNNNNNGC 4 cut(s) 86, 275, 353, 1007
NciI CCSGG 1 cut(s) 526
NcoI CCATGG 2 cut(s) 141, 1406
NdeII GATC 7 cut(s) 120, 263, 499, 630, 651, 1105, 1315
NlaIV GGNNCC 3 cut(s) 139, 483, 561
NmuCI GTSAC 3 cut(s) 156, 475, 1370
NspI RCATGY 1 cut(s) 41
NspV TTCGAA 1 cut(s) 252
PciI ACATGT 1 cut(s) 37
PciSI GCTCTTC 2 cut(s) 291, 308
PcsI WCGNNNNNNNCGW 4 cut(s) 21, 611, 1601, 1664
PctI GAATGC 1 cut(s) 1193
PdmI GAANNNNTTC 2 cut(s) 1415, 1625
PfeI GAWTC 5 cut(s) 114, 1255, 1335, 1342, 1493
PinAI ACCGGT 1 cut(s) 1535
PkrI GCNGC 1 cut(s) 1250
PleI GAGTC 3 cut(s) 185, 653, 1433
PpsI GAGTC 3 cut(s) 185, 653, 1433
PscI ACATGT 1 cut(s) 37
PsiI TTATAA 1 cut(s) 1433
Psp124BI GAGCTC 1 cut(s) 303
Psp1406I AACGTT 1 cut(s) 554
Psp6I CCWGG 1 cut(s) 1540
PspEI GGTNACC 2 cut(s) 1370, 1476
PspGI CCWGG 1 cut(s) 1540
PspN4I GGNNCC 3 cut(s) 139, 483, 561
PspPI GGNCC 4 cut(s) 1064, 1485, 1538, 1674
PstI CTGCAG 1 cut(s) 697
PsuI RGATCY 1 cut(s) 1105
PvuII CAGCTG 1 cut(s) 1061
RsaI GTAC 3 cut(s) 508, 1312, 1594
RsaNI GTAC 3 cut(s) 507, 1311, 1593
RseI CAYNNNNRTG 1 cut(s) 395
SacI GAGCTC 1 cut(s) 303
SalI GTCGAC 2 cut(s) 23, 1401
SapI GCTCTTC 2 cut(s) 291, 308
SaqAI TTAA 6 cut(s) 210, 452, 686, 966, 993, 1566
SatI GCNGC 1 cut(s) 1249
Sau3AI GATC 7 cut(s) 120, 263, 499, 630, 651, 1105, 1315
Sau96I GGNCC 4 cut(s) 1064, 1485, 1538, 1674
SchI GAGTC 3 cut(s) 185, 653, 1433
ScrFI CCNGG 2 cut(s) 526, 1542
SduI GDGCHC 2 cut(s) 303, 743
SfaNI GCATC 1 cut(s) 1556
SfcI CTRYAG 1 cut(s) 693
SfuI TTCGAA 1 cut(s) 252
SinI GGWCC 4 cut(s) 1064, 1485, 1538, 1674
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 593, 1302
SmoI CTYRAG 2 cut(s) 593, 1302
SpeI ACTAGT 1 cut(s) 97
Sse9I AATT 2 cut(s) 1175, 1414
SsiI CCGC 3 cut(s) 719, 761, 999
SspMI CTAG 4 cut(s) 98, 491, 626, 1397
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 524, 1540
StyI CCWWGG 2 cut(s) 141, 1406
TasI AATT 2 cut(s) 1175, 1414
TfiI GAWTC 5 cut(s) 114, 1255, 1335, 1342, 1493
Tru1I TTAA 6 cut(s) 210, 452, 686, 966, 993, 1566
Tru9I TTAA 6 cut(s) 210, 452, 686, 966, 993, 1566
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 3 cut(s) 156, 475, 1370
TseI GCWGC 1 cut(s) 1248
Tsp45I GTSAC 3 cut(s) 156, 475, 1370
TspGWI ACGGA 7 cut(s) 190, 196, 201, 494, 553, 620, 758
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 4 cut(s) 1064, 1485, 1538, 1674
XapI RAATTY 1 cut(s) 1414
XceI RCATGY 1 cut(s) 41
XmiI GTMKAC 3 cut(s) 24, 961, 1402
XmnI GAANNNNTTC 2 cut(s) 1415, 1625
XspI CTAG 4 cut(s) 98, 491, 626, 1397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.