Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008327

Physical Location & Seq

Genomic Coordinates Reverse (-)

3372092 .. 3374314

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATCCTTTTCTGGTCGAGGCTCTTCAAAATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGCTTGATATACAGAAGTTCTTTCAAAACCCTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTCCAACATCGTACCTGCGTCTTGCTGCACATCGAGTTGCTCAGCATTATGGACTAGTAACCATGGCTTTGGACAATGGTACTGGTGCAGGAGATGGATCCGATAACAGAATCCTCGTGACGAAGACAGCGGAAAGTAGATTTCCTTATGTCTGCTTATCCGAAATCCCTGTGAAACAACCTGAGAATGGTAGACCCGAGGGTTTCAAAATCGCTATCAAGCCTAGACCCAAGAGAGGATCTGGTTGTGGGGGTAGCGGATCAGGAGTACAGCAGAATCTTTTGAGAAGTGTTGAGGAGAGAAAGGAAGAGTATGATAAAGCTCGCGCTCGGATCTTTAATAGTCCTAGCAGTTCCGACTCTGAAGATTCTTCATCACTACGACCTCCCTCTCTTGAAGTGAGAAACACATGTATAAACCGGAATGAGACTGAAGTGGCGGTTAATAATAGTCCTGTCGATGCTGTTACTCGAGACTCTGGACGGACTTCTCGAGTAGCCATTATCAGAGATAGAGAGAAAGATCGATATGACCCGGATTATGACAGGAGCTATGACAGGTATGTCGTGGATCCGGCCTACAGGTACGTTAGGGTTATGCCGTCTGGCCAAAGCTTCAGTCCAATGCCAATCCATATTCCGTTTCACGATGGGTTTTTCCCGCATATGCCAAGAGGTCATCAAGCCAACCTAAACTATGGGCATCCGCTTAACCCTGCTTTGAGTCCCTTTACTCATAACGTGGCTTCATATACACCGTGGCCAAACTCACCCGTTATGAACTATGCACAGCCGTTGAACGGCTCAGACACAAATCTTTACAGGTATCCTTCTGCAAGTAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

333

Amino Acids

37.53

Weight (kDa)

7.76

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
R3H	PF01424	27 - 78	1.2e-09	R3H domain
SUZ	PF12752	121 - 167	1.5e-11	SUZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10770 AT3G10770 AT5G05100
fragaria_vesca	FvH4_7g05730 FvH4_7g05730
malus_domestica	MD02G1255700.v1.1 MD07G1065700.v1.1
prunus_persica	Prupe.2G079700_v2.0.a1 Prupe.2G079700_v2.0.a1
pyrus_communis	pycom02g21660 pycom07g05020
rosa_chinensis	RchiOBHm_Chr1g0332761
rosa_laevigata	RLG00000029646
rosa_multiflora	Rmu_co8256129.1_g000001 Rmu_sc0004239.1_g000021 Rmu_sc0004372.1_g000007
rosa_roxburghii	Rroxscaffold_4G00318000
rosa_rugosa	Rorug01G0104300
rosa_samantha	Rh1AG128000 Rh1BG097200 Rh1CG121700 Rh1DG133700
rosa_wichuraiana	Rw1G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	346
AccII	CGCG	1 cut(s)	480
AciI	CCGC	6 cut(s)	149, 284, 411, 593, 815, 860
AclWI	GGATC	9 cut(s)	29, 42, 246, 259, 400, 421, 494, 719, 732
AcoI	YGGCCR	2 cut(s)	760, 914
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	4 cut(s)	119, 537, 606, 754
AfaI	GTAC	4 cut(s)	167, 235, 423, 740
AfiI	CCNNNNNNNGG	3 cut(s)	341, 389, 953
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	5 cut(s)	59, 119, 361, 551, 952
AhlI	ACTAGT	1 cut(s)	208
AluBI	AGCT	6 cut(s)	26, 97, 133, 476, 705, 768
AluI	AGCT	6 cut(s)	26, 97, 133, 476, 705, 768
Alw26I	GTCTC	3 cut(s)	80, 575, 621
AlwI	GGATC	9 cut(s)	29, 42, 246, 259, 400, 421, 494, 719, 732
Ama87I	CYCGRG	3 cut(s)	350, 624, 645
AoxI	GGCC	3 cut(s)	729, 760, 914
ApeKI	GCWGC	2 cut(s)	130, 179
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	4 cut(s)	52, 84, 757, 789
AspLEI	GCGC	1 cut(s)	482
AsuC2I	CCSGG	1 cut(s)	689
AsuHPI	GGTGA	2 cut(s)	70, 915
AsuII	TTCGAA	1 cut(s)	141
AvaI	CYCGRG	3 cut(s)	350, 624, 645
BalI	TGGCCA	2 cut(s)	762, 916
BamHI	GGATCC	3 cut(s)	34, 251, 724
BauI	CACGAG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	142, 166
BccI	CCATC	2 cut(s)	242, 797
BceAI	ACGGC	3 cut(s)	739, 931, 970
BciVI	GTATCC	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	689
BcoDI	GTCTC	3 cut(s)	80, 575, 621
BcuI	ACTAGT	1 cut(s)	208
BfaI	CTAG	3 cut(s)	209, 378, 501
BfmI	CTRYAG	1 cut(s)	733
BfuAI	ACCTGC	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	990
BisI	GCNGC	2 cut(s)	131, 180
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	2 cut(s)	132, 181
Bme1390I	CCNGG	1 cut(s)	689
BmeT110I	CYCGRG	3 cut(s)	350, 624, 645
BmiI	GGNNCC	3 cut(s)	36, 253, 726
BmrFI	CCNGG	1 cut(s)	689
BmsI	GCATC	2 cut(s)	604, 865
BpiI	GAAGAC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	689
Bsa29I	ATCGAT	1 cut(s)	679
BsaJI	CCNNGG	3 cut(s)	216, 351, 911
BsaWI	WCCGGW	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 389, 953
Bse1I	ACTGG	1 cut(s)	241
BseCI	ATCGAT	1 cut(s)	679
BseDI	CCNNGG	3 cut(s)	216, 351, 911
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	3 cut(s)	341, 389, 953
BseMII	CTCAG	4 cut(s)	117, 209, 327, 972
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	142, 166
BsgI	GTGCAG	2 cut(s)	165, 261
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	731, 762, 916
BshVI	ATCGAT	1 cut(s)	679
BsiHKCI	CYCGRG	3 cut(s)	350, 624, 645
BsiSI	CCGG	3 cut(s)	574, 689, 728
BslFI	GGGAC	1 cut(s)	864
BslI	CCNNNNNNNGG	3 cut(s)	341, 389, 953
BsmAI	GTCTC	3 cut(s)	80, 575, 621
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	864
BsnI	GGCC	3 cut(s)	731, 762, 916
BsoBI	CYCGRG	3 cut(s)	350, 624, 645
Bsp119I	TTCGAA	1 cut(s)	141
Bsp143I	GATC	7 cut(s)	34, 251, 392, 413, 486, 676, 724
Bsp1720I	GCTNAGC	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	6 cut(s)	149, 284, 411, 593, 815, 860
BspANI	GGCC	3 cut(s)	731, 762, 916
BspCNI	CTCAG	4 cut(s)	118, 208, 328, 971
BspDI	ATCGAT	1 cut(s)	679
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	3 cut(s)	36, 253, 726
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	9 cut(s)	29, 42, 246, 259, 400, 421, 494, 719, 732
BspQI	GCTCTTC	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	216, 351, 911
BssMI	GATC	7 cut(s)	34, 251, 392, 413, 486, 676, 724
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	912
Bst6I	CTCTTC	2 cut(s)	60, 456
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	4 cut(s)	126, 195, 336, 958
BstDSI	CCRYGG	2 cut(s)	216, 911
BstF5I	GGATG	1 cut(s)	856
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	7 cut(s)	37, 254, 395, 416, 489, 679, 727
BstMAI	GTCTC	3 cut(s)	80, 575, 621
BstMBI	GATC	7 cut(s)	34, 251, 392, 413, 486, 676, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	1 cut(s)	733
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	142, 166
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	5 cut(s)	34, 251, 392, 486, 724
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	5 cut(s)	34, 251, 392, 486, 724
Bsu15I	ATCGAT	1 cut(s)	679
BsuI	GTATCC	1 cut(s)	990
BsuRI	GGCC	3 cut(s)	731, 762, 916
BsuTUI	ATCGAT	1 cut(s)	679
BtgI	CCRYGG	2 cut(s)	216, 911
BtsCI	GGATG	1 cut(s)	856
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	478
CfoI	GCGC	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	679
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	4 cut(s)	166, 234, 422, 739
CviAII	CATG	2 cut(s)	217, 564
CviQI	GTAC	4 cut(s)	166, 234, 422, 739
DdeI	CTNAG	4 cut(s)	126, 195, 336, 958
DpnI	GATC	7 cut(s)	36, 253, 394, 415, 488, 678, 726
DpnII	GATC	7 cut(s)	34, 251, 392, 413, 486, 676, 724
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
EaeI	YGGCCR	2 cut(s)	760, 914
Eam1104I	CTCTTC	2 cut(s)	60, 456
EarI	CTCTTC	2 cut(s)	60, 456
Eco130I	CCWWGG	1 cut(s)	216
Eco57I	CTGAAG	4 cut(s)	119, 537, 606, 754
Eco88I	CYCGRG	3 cut(s)	350, 624, 645
EcoRI	GAATTC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	2 cut(s)	220, 567
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	2 cut(s)	216, 563
FauI	CCCGC	2 cut(s)	156, 822
FauNDI	CATATG	1 cut(s)	819
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	131, 180
FokI	GGATG	1 cut(s)	843
Fsp4HI	GCNGC	2 cut(s)	131, 180
FspBI	CTAG	3 cut(s)	209, 378, 501
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	2 cut(s)	131, 180
HaeIII	GGCC	3 cut(s)	731, 762, 916
HapII	CCGG	3 cut(s)	574, 689, 728
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	220, 567
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	766
HinfI	GANTC	6 cut(s)	264, 430, 512, 521, 629, 877
HpaII	CCGG	3 cut(s)	574, 689, 728
HphI	GGTGA	2 cut(s)	70, 915
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	7 cut(s)	256, 316, 486, 511, 517, 662, 961
Hpy188III	TCNNGA	7 cut(s)	271, 417, 548, 626, 633, 645, 800
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	13, 993
HpyCH4III	ACNGT	1 cut(s)	912
HpyCH4IV	ACGT	2 cut(s)	741, 894
HpyCH4V	TGCA	4 cut(s)	182, 242, 941, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	4 cut(s)	126, 195, 336, 958
HpySE526I	ACGT	2 cut(s)	741, 894
Hsp92II	CATG	2 cut(s)	220, 567
HspAI	GCGC	1 cut(s)	480
Kzo9I	GATC	7 cut(s)	34, 251, 392, 413, 486, 676, 724
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	94, 702
Lsp1109I	GCAGC	2 cut(s)	142, 166
LweI	GCATC	2 cut(s)	604, 865
MaeI	CTAG	3 cut(s)	209, 378, 501
MaeII	ACGT	2 cut(s)	741, 894
MaeIII	GTNAC	3 cut(s)	211, 271, 619
MalI	GATC	7 cut(s)	36, 253, 394, 415, 488, 678, 726
MboI	GATC	7 cut(s)	34, 251, 392, 413, 486, 676, 724
MboII	GAAGA	5 cut(s)	47, 289, 473, 516, 530
MflI	RGATCY	5 cut(s)	34, 251, 392, 486, 724
MlsI	TGGCCA	2 cut(s)	762, 916
MluCI	AATT	1 cut(s)	143
MluNI	TGGCCA	2 cut(s)	762, 916
MlyI	GAGTC	3 cut(s)	506, 623, 886
MmeI	TCCRAC	2 cut(s)	182, 534
MnlI	CCTC	9 cut(s)	43, 75, 278, 346, 383, 442, 549, 553, 821
Mox20I	TGGCCA	2 cut(s)	762, 916
MscI	TGGCCA	2 cut(s)	762, 916
MseI	TTAA	3 cut(s)	492, 597, 864
Msp20I	TGGCCA	2 cut(s)	762, 916
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	3 cut(s)	574, 689, 728
MspR9I	CCNGG	1 cut(s)	689
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	689
NcoI	CCATGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	819
NdeII	GATC	7 cut(s)	34, 251, 392, 413, 486, 676, 724
NlaIII	CATG	2 cut(s)	220, 567
NlaIV	GGNNCC	3 cut(s)	36, 253, 726
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	567
NspV	TTCGAA	1 cut(s)	141
PaeR7I	CTCGAG	2 cut(s)	624, 645
PciI	ACATGT	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	643
PfeI	GAWTC	3 cut(s)	264, 430, 521
PkrI	GCNGC	2 cut(s)	132, 181
PleI	GAGTC	3 cut(s)	506, 623, 885
PpsI	GAGTC	3 cut(s)	506, 623, 885
PscI	ACATGT	1 cut(s)	563
PspN4I	GGNNCC	3 cut(s)	36, 253, 726
PsuI	RGATCY	5 cut(s)	34, 251, 392, 486, 724
RsaI	GTAC	4 cut(s)	167, 235, 423, 740
RsaNI	GTAC	4 cut(s)	166, 234, 422, 739
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	492, 597, 864
SatI	GCNGC	2 cut(s)	131, 180
Sau3AI	GATC	7 cut(s)	34, 251, 392, 413, 486, 676, 724
SchI	GAGTC	3 cut(s)	506, 623, 886
ScrFI	CCNGG	1 cut(s)	689
SfaNI	GCATC	2 cut(s)	604, 865
SfcI	CTRYAG	1 cut(s)	733
Sfr274I	CTCGAG	2 cut(s)	624, 645
SfuI	TTCGAA	1 cut(s)	141
SlaI	CTCGAG	2 cut(s)	624, 645
SmlI	CTYRAG	2 cut(s)	624, 645
SmoI	CTYRAG	2 cut(s)	624, 645
SpeI	ACTAGT	1 cut(s)	208
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	6 cut(s)	149, 284, 411, 593, 815, 860
SspMI	CTAG	3 cut(s)	209, 378, 501
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	912
TaiI	ACGT	2 cut(s)	744, 897
TaqI	TCGA	7 cut(s)	48, 141, 187, 612, 625, 646, 679
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	421
TfiI	GAWTC	3 cut(s)	264, 430, 521
Tru1I	TTAA	3 cut(s)	492, 597, 864
Tru9I	TTAA	3 cut(s)	492, 597, 864
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	130, 179
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	516, 891, 947
TspGWI	ACGGA	2 cut(s)	652, 783
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XhoI	CTCGAG	2 cut(s)	624, 645
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	3 cut(s)	209, 378, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.