Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008327

Physical Location & Seq

Genomic Coordinates Reverse (-)

4313821 .. 4315635

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGGGCTCTGTGGCGGAGGATATCGGAGCCCCGGAGTCATGGGAGGTCGCCGGTTTGGACGACGCCTTGAACCGCCTGATGCTTTCCTCCACCAAGGATTCCAAGCCCCCCCAAAGCCTTACCGACGTCCCGCCTTTGGTTTCCTCTTCTTCTGACGCTTCTGATAACTTTTCCGAGGATGCCGTCAATCAGGTCGACCAGTTCCTTCGCGAGGCCTTGCAAAACCCTCGGGAGCGCCTATCAATTTTACGAATGGAGCAAGATGTGGAGAAGTTTATCCGTGATCCTCTTCAGCAGCAACTAGAGTTTCAGCAGTTGCCCACTTCTTATTTACGCTTGGCTGCACATCGTGTGGCTCAACATTATTCGCTTCAGTCAATGGTTTTATTAGATGATAATTTACCTGATGGCTCTGGTTCCAGAATTATTGTCCGCAAAACTCCTGAGTGTCGACTCCCTTTGATTCGCCTTGCAGACATCCCTGTTAATTTACCGTCAGAAGACAGCGGTGTTACTAAGGTTGCAATAAAACAGAGGCCACAGAAACGGTCACAGGGTGGAAACAGTGCAAACTCAAATTCGTTAAAGGAAAACAGTGCTAAAAGTGTGGAAGAACGGAAAGAAGAGTATAACAGGGCTCGTGCACGAATATTTAACTCTAGTATTAATGTGAGTGGTAGTTCAAGTGGGAAATCAGAAAGTGAACCAAAACTGCAGGATACTCCACAACATGTACCCTTGGTGATGCCAAAGGTGGAAGATCTACCAAGTGTTTCTGATTTGCACTCTGGTGGGGGTTTAATCGATTCTTCAACAAGTAGCAGTAGAACAGCTAGAATTAGGCCAGAGAAGGAGCCAATTGGGAGGTACAAACCAAATAATAGGGTAGCTATATTTAGGAGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03015 ko05164 map03010 map03015 map05164

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

304

Amino Acids

33.57

Weight (kDa)

6.17

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
R3H	PF01424	83 - 128	3e-08	R3H domain
SUZ	PF12752	174 - 222	2.1e-14	SUZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10770 AT3G10770 AT5G05100
fragaria_vesca	FvH4_7g05730 FvH4_7g05730
malus_domestica	MD02G1255700.v1.1 MD07G1065700.v1.1
prunus_persica	Prupe.2G079700_v2.0.a1 Prupe.2G079700_v2.0.a1
pyrus_communis	pycom02g21660 pycom07g05020
rosa_chinensis	RchiOBHm_Chr1g0332761
rosa_laevigata	RLG00000029646
rosa_multiflora	Rmu_co8256129.1_g000001 Rmu_sc0004239.1_g000021 Rmu_sc0004372.1_g000007
rosa_roxburghii	Rroxscaffold_4G00318000
rosa_rugosa	Rorug01G0104300
rosa_samantha	Rh1AG128000 Rh1BG097200 Rh1CG121700 Rh1DG133700
rosa_wichuraiana	Rw1G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccI	GTMKAC	2 cut(s)	198, 454
AccII	CGCG	1 cut(s)	213
AciI	CCGC	5 cut(s)	17, 76, 134, 436, 510
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	2 cut(s)	278, 359
AcyI	GRCGYC	2 cut(s)	66, 129
AdeI	CACNNNGTG	2 cut(s)	353, 560
AfaI	GTAC	2 cut(s)	738, 872
AfiI	CCNNNNNNNGG	2 cut(s)	139, 214
AflIII	ACRYGT	1 cut(s)	733
AgsI	TTSAA	3 cut(s)	73, 687, 816
AleI	CACNNNNGTG	1 cut(s)	792
AluBI	AGCT	2 cut(s)	836, 893
AluI	AGCT	2 cut(s)	836, 893
Alw21I	GWGCWC	1 cut(s)	649
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	3 cut(s)	216, 539, 845
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	2 cut(s)	298, 344
ApoI	RAATTY	1 cut(s)	580
AseI	ATTAAT	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	757
AvaI	CYCGRG	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	649
BanII	GRGCYC	3 cut(s)	11, 34, 643
BauI	CACGAG	1 cut(s)	642
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	310, 331
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciVI	GTATCC	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	35
BfaI	CTAG	3 cut(s)	305, 663, 837
BfmI	CTRYAG	1 cut(s)	716
BfoI	RGCGCY	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	715
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	2 cut(s)	299, 345
BlsI	GCNGC	2 cut(s)	300, 346
Bme1390I	CCNGG	1 cut(s)	35
BmeT110I	CYCGRG	1 cut(s)	231
BmiI	GGNNCC	3 cut(s)	31, 421, 858
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	3 cut(s)	72, 172, 738
BpiI	GAAGAC	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	807
BsaHI	GRCGYC	2 cut(s)	66, 129
BsaJI	CCNNGG	5 cut(s)	33, 96, 177, 230, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 214
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	202
BseCI	ATCGAT	1 cut(s)	807
BseDI	CCNNGG	5 cut(s)	33, 96, 177, 230, 741
BseGI	GGATG	3 cut(s)	187, 480, 912
BseLI	CCNNNNNNNGG	2 cut(s)	139, 214
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	2 cut(s)	310, 331
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	218, 541, 847
BshVI	ATCGAT	1 cut(s)	807
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	35, 54
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	139, 214
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	218, 541, 847
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	4 cut(s)	11, 34, 643, 649
Bsp143I	GATC	2 cut(s)	286, 763
Bsp68I	TCGCGA	1 cut(s)	213
BspACI	CCGC	5 cut(s)	17, 76, 134, 436, 510
BspANI	GGCC	3 cut(s)	218, 541, 847
BspCNI	CTCAG	1 cut(s)	439
BspDI	ATCGAT	1 cut(s)	807
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	31, 421, 858
BspMAI	CTGCAG	1 cut(s)	720
BspPI	GGATC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	5 cut(s)	33, 96, 177, 230, 741
BssMI	GATC	2 cut(s)	286, 763
BssNI	GRCGYC	2 cut(s)	66, 129
BssSI	CACGAG	1 cut(s)	642
BssT1I	CCWWGG	2 cut(s)	96, 741
Bst2BI	CACGAG	1 cut(s)	642
Bst4CI	ACNGT	4 cut(s)	498, 552, 569, 599
Bst6I	CTCTTC	3 cut(s)	154, 297, 621
BstACI	GRCGYC	2 cut(s)	66, 129
BstDEI	CTNAG	2 cut(s)	447, 519
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	3 cut(s)	187, 480, 912
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	289, 766
BstMBI	GATC	2 cut(s)	286, 763
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	716
BstSLI	GKGCMC	1 cut(s)	649
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	310, 331
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
Bsu15I	ATCGAT	1 cut(s)	807
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	3 cut(s)	218, 541, 847
BsuTUI	ATCGAT	1 cut(s)	807
BtsCI	GGATG	3 cut(s)	187, 480, 912
BtsIMutI	CAGTG	2 cut(s)	574, 604
BtuMI	TCGCGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	807
CseI	GACGC	2 cut(s)	74, 167
Csp6I	GTAC	2 cut(s)	737, 871
CviAII	CATG	2 cut(s)	42, 734
CviQI	GTAC	2 cut(s)	737, 871
DdeI	CTNAG	2 cut(s)	447, 519
DpnI	GATC	2 cut(s)	288, 765
DpnII	GATC	2 cut(s)	286, 763
DraIII	CACNNNGTG	2 cut(s)	353, 560
Eam1104I	CTCTTC	3 cut(s)	154, 297, 621
EarI	CTCTTC	3 cut(s)	154, 297, 621
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	96, 741
Eco147I	AGGCCT	1 cut(s)	218
Eco24I	GRGCYC	3 cut(s)	11, 34, 643
Eco32I	GATATC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	278, 359
Eco88I	CYCGRG	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	96, 741
EcoT38I	GRGCYC	3 cut(s)	11, 34, 643
ErhI	CCWWGG	2 cut(s)	96, 741
FaeI	CATG	2 cut(s)	45, 737
FaiI	YATR	4 cut(s)	43, 633, 735, 896
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	41, 733
FauI	CCCGC	1 cut(s)	141
FblI	GTMKAC	2 cut(s)	198, 454
Fnu4HI	GCNGC	2 cut(s)	299, 345
FokI	GGATG	2 cut(s)	194, 467
FriOI	GRGCYC	3 cut(s)	11, 34, 643
Fsp4HI	GCNGC	2 cut(s)	299, 345
FspBI	CTAG	3 cut(s)	305, 663, 837
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	299, 345
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	218, 541, 847
HapII	CCGG	2 cut(s)	35, 54
HgaI	GACGC	2 cut(s)	74, 167
HhaI	GCGC	1 cut(s)	240
Hin1I	GRCGYC	2 cut(s)	66, 129
Hin1II	CATG	2 cut(s)	45, 737
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	2 cut(s)	199, 455
HindII	GTYRAC	2 cut(s)	199, 455
HinfI	GANTC	5 cut(s)	38, 101, 456, 466, 809
HpaII	CCGG	2 cut(s)	35, 54
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	4 cut(s)	199, 455, 647, 707
Hpy188I	TCNGA	7 cut(s)	29, 157, 166, 178, 502, 700, 781
Hpy188III	TCNNGA	4 cut(s)	212, 233, 423, 446
Hpy8I	GTNNAC	4 cut(s)	199, 455, 647, 707
Hpy99I	CGWCG	2 cut(s)	68, 131
HpyAV	CCTTC	2 cut(s)	218, 847
HpyCH4III	ACNGT	4 cut(s)	498, 552, 569, 599
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	8 cut(s)	223, 347, 476, 527, 572, 647, 718, 787
HpyF3I	CTNAG	2 cut(s)	447, 519
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	2 cut(s)	66, 129
Hsp92II	CATG	2 cut(s)	45, 737
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	286, 763
LmnI	GCTCC	4 cut(s)	29, 235, 259, 856
Lsp1109I	GCAGC	2 cut(s)	310, 331
LweI	GCATC	3 cut(s)	72, 172, 738
MaeI	CTAG	3 cut(s)	305, 663, 837
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	514, 552
MalI	GATC	2 cut(s)	288, 765
MboI	GATC	2 cut(s)	286, 763
MboII	GAAGA	8 cut(s)	141, 144, 284, 515, 626, 638, 773, 804
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	4 cut(s)	11, 34, 643, 649
MluCI	AATT	7 cut(s)	246, 400, 426, 490, 580, 840, 861
MlyI	GAGTC	2 cut(s)	47, 450
MseI	TTAA	5 cut(s)	489, 587, 657, 669, 803
MslI	CAYNNNNRTG	1 cut(s)	792
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	2 cut(s)	35, 54
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	861
MvnI	CGCG	1 cut(s)	213
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	286, 763
NlaIII	CATG	2 cut(s)	45, 737
NlaIV	GGNNCC	3 cut(s)	31, 421, 858
NmuCI	GTSAC	1 cut(s)	552
NruI	TCGCGA	1 cut(s)	213
NspI	RCATGY	1 cut(s)	737
OliI	CACNNNNGTG	1 cut(s)	792
PceI	AGGCCT	1 cut(s)	218
PciI	ACATGT	1 cut(s)	733
PfeI	GAWTC	3 cut(s)	101, 466, 809
PkrI	GCNGC	2 cut(s)	300, 346
PleI	GAGTC	2 cut(s)	46, 450
PpsI	GAGTC	2 cut(s)	46, 450
PscI	ACATGT	1 cut(s)	733
PshBI	ATTAAT	1 cut(s)	669
PspN4I	GGNNCC	3 cut(s)	31, 421, 858
PstI	CTGCAG	1 cut(s)	720
PsuI	RGATCY	1 cut(s)	763
RruI	TCGCGA	1 cut(s)	213
RsaI	GTAC	2 cut(s)	738, 872
RsaNI	GTAC	2 cut(s)	737, 871
RseI	CAYNNNNRTG	1 cut(s)	792
SalI	GTCGAC	2 cut(s)	197, 453
SaqAI	TTAA	5 cut(s)	489, 587, 657, 669, 803
SatI	GCNGC	2 cut(s)	299, 345
Sau3AI	GATC	2 cut(s)	286, 763
SchI	GAGTC	2 cut(s)	47, 450
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	4 cut(s)	11, 34, 643, 649
SetI	ASST	9 cut(s)	51, 132, 198, 409, 525, 759, 838, 872, 895
SfaNI	GCATC	3 cut(s)	72, 172, 738
SfcI	CTRYAG	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	792
Sse9I	AATT	7 cut(s)	246, 400, 426, 490, 580, 840, 861
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	5 cut(s)	17, 76, 134, 436, 510
SspI	AATATT	1 cut(s)	654
SspMI	CTAG	3 cut(s)	305, 663, 837
StuI	AGGCCT	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	2 cut(s)	96, 741
TaaI	ACNGT	4 cut(s)	498, 552, 569, 599
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	198, 454, 807
TasI	AATT	7 cut(s)	246, 400, 426, 490, 580, 840, 861
TfiI	GAWTC	3 cut(s)	101, 466, 809
Tru1I	TTAA	5 cut(s)	489, 587, 657, 669, 803
Tru9I	TTAA	5 cut(s)	489, 587, 657, 669, 803
TscAI	CASTG	2 cut(s)	574, 604
TseFI	GTSAC	1 cut(s)	552
TseI	GCWGC	2 cut(s)	298, 344
Tsp45I	GTSAC	1 cut(s)	552
TspGWI	ACGGA	2 cut(s)	272, 634
TspRI	CASTG	2 cut(s)	574, 604
VneI	GTGCAC	1 cut(s)	645
VspI	ATTAAT	1 cut(s)	669
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	737
XmiI	GTMKAC	2 cut(s)	198, 454
XspI	CTAG	3 cut(s)	305, 663, 837
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.