Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008327

Physical Location & Seq

Genomic Coordinates Forward (+)

17378730 .. 17380548

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0104300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCTATGAGATCTGTTCAGAGCCGAGTGGTGCTGACTCGAGCCTTGTTGACTCGCTCTATGGAGTCCTCTCGGGGAGCCACCCGTTACTACAGTGACGGAAAGGGCAAGATTCTCAGCGAGGAGGAACGCGCTGCTGAGAACGTTTACATCAAGAAAATGGAGAGGGAGAGGCTGGAGAAGCTGAAGCAGAAGGCTGCTAAAGAAAGCGCCGAGAATGAGAAAGTAATTGCTGATAAGAAGACTGACGGAACCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03015 ko05164 map03010 map03015 map05164

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

86

Amino Acids

9.82

Weight (kDa)

9.74

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10770 AT3G10770 AT5G05100
fragaria_vesca	FvH4_7g05730 FvH4_7g05730
malus_domestica	MD02G1255700.v1.1 MD07G1065700.v1.1
prunus_persica	Prupe.2G079700_v2.0.a1 Prupe.2G079700_v2.0.a1
pyrus_communis	pycom02g21660 pycom07g05020
rosa_chinensis	RchiOBHm_Chr1g0332761
rosa_laevigata	RLG00000029646
rosa_multiflora	Rmu_co8256129.1_g000001 Rmu_sc0004239.1_g000021 Rmu_sc0004372.1_g000007
rosa_roxburghii	Rroxscaffold_4G00318000
rosa_rugosa	Rorug01G0104300
rosa_samantha	Rh1AG128000 Rh1BG097200 Rh1CG121700 Rh1DG133700
rosa_wichuraiana	Rw1G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AclI	AACGTT	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	206
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Ama87I	CYCGRG	2 cut(s)	39, 72
ApeKI	GCWGC	2 cut(s)	134, 197
AspLEI	GCGC	2 cut(s)	134, 212
AvaI	CYCGRG	2 cut(s)	39, 72
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	121, 184
BfmI	CTRYAG	1 cut(s)	91
BfoI	RGCGCY	1 cut(s)	213
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	2 cut(s)	135, 198
BlsI	GCNGC	2 cut(s)	136, 199
BmeT110I	CYCGRG	2 cut(s)	39, 72
BmiI	GGNNCC	2 cut(s)	79, 253
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	197
BseMII	CTCAG	2 cut(s)	129, 130
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	121, 184
Bsh1236I	CGCG	1 cut(s)	132
BsiHKCI	CYCGRG	2 cut(s)	39, 72
BsoBI	CYCGRG	2 cut(s)	39, 72
Bsp143I	GATC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	129, 130
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	79, 253
BssMI	GATC	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	116, 138
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	134, 212
BstKTI	GATC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	121, 184
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	100
CfoI	GCGC	2 cut(s)	134, 212
CviJI	RGCY	7 cut(s)	5, 24, 44, 80, 175, 184, 197
CviKI_1	RGCY	7 cut(s)	5, 24, 44, 80, 175, 184, 197
DdeI	CTNAG	2 cut(s)	116, 138
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	2 cut(s)	39, 72
FaiI	YATR	2 cut(s)	8, 62
Fnu4HI	GCNGC	2 cut(s)	135, 198
Fsp4HI	GCNGC	2 cut(s)	135, 198
GlaI	GCGC	2 cut(s)	133, 211
GluI	GCNGC	2 cut(s)	135, 198
GsuI	CTGGAG	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	213
HhaI	GCGC	2 cut(s)	134, 212
Hin6I	GCGC	2 cut(s)	132, 210
HinP1I	GCGC	2 cut(s)	132, 210
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	4 cut(s)	37, 52, 65, 112
Hpy166II	GTNNAC	2 cut(s)	51, 148
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	51, 148
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	2 cut(s)	116, 138
HpySE526I	ACGT	1 cut(s)	144
HspAI	GCGC	2 cut(s)	132, 210
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	1 cut(s)	161
Lsp1109I	GCAGC	2 cut(s)	121, 184
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	86, 95
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	253
MflI	RGATCY	1 cut(s)	11
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	3 cut(s)	31, 46, 74
MnlI	CCTC	5 cut(s)	79, 115, 118, 159, 165
MseI	TTAA	1 cut(s)	259
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	181
NdeII	GATC	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	79, 253
NmeAIII	GCCGAG	2 cut(s)	50, 238
NmuCI	GTSAC	1 cut(s)	95
PaeR7I	CTCGAG	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	136, 199
PleI	GAGTC	3 cut(s)	31, 46, 73
PpsI	GAGTC	3 cut(s)	31, 46, 73
Psp1406I	AACGTT	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	79, 253
PspXI	VCTCGAGB	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	259
SatI	GCNGC	2 cut(s)	135, 198
Sau3AI	GATC	1 cut(s)	11
SchI	GAGTC	3 cut(s)	31, 46, 74
SetI	ASST	2 cut(s)	147, 186
SfcI	CTRYAG	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	2 cut(s)	134, 197
Tsp45I	GTSAC	1 cut(s)	95
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.