AT5G05100

nucleic acid binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008327
Physical Location & Seq
Reverse (-)
1505041 .. 1507224
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05100.1

Sequence Viewer

Length: 975 bp
ATGGCCGCTATGAGCGACAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTCAGAACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTTGATATACAGAAGTTCTTTCAAAGTCCAGAGCAGCAACAATATGAGTTCCAGCCTTTGCCTACATCTTATCTTCGTCTTATTGCTCACCGTGTTGCTCAGCATTACGGGCTATTTACCACTGCTTTAGAAGGTGGTGGTGTTGATGGCTCAGGGAACAGAATCCTGGCGACCAAAACGGTTGAAAGTAGATACCCTTACGTCTGTTTGTCTGAGATTCCTGTAAAGCAACCTGAGATTCATGGTAGGCCTGAGGGTTTCAAAATCGCCATCAAGCCTAGGCCTAACAGAGGAGCTGGTGGGAGTGGTAGTGGATCAGGAGTAGAGAAGAATCTTTTGAGAAGCGTTGAGGAGAGAAAAGAAGAGTATGATAAAGCTCGGGCTCGTATCTTCAACAGCCCTAGCAGTTCAGACTCTGAAGATTCTTCAACACGAGCTCCTCCTCCTCCCTATCCTCGTCTCGACTCAAAACATAATACTGCATGTCCGAGTAGAAATGAGACTGAAGTGGTGGTTAATTATAATAGTAATCCTGTTGATGTAGAGAGGAATGGTGTTATCAGAGACTCAGGGCGGACTTCTCGGGTTGCCATTATTAGAGATAGAGAGAAGGATCGTTATGATCCTGATTATGACCGTAACAGGTATGTGAGGGTTGCGCCACCGGTACAAAACTTCAATCCGATACCGATTCCGCTTCCGTTCCATGACGCAATTTTCCCACAGATGCCAAGAACTCAAGCCAGCCTAAACTATGGACACCCCTTAAACCCAGCTATGACGGCACCTTCTTATACAGAGTGGCCTAGTGCCACTATGACTTATGCACAAACATTGAATGCGTCAGACGTACATCATTTCAGGCACCCGAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

324

Amino Acids

36.55

Weight (kDa)

8.42

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H PF01424 27 - 74 9.5e-11 R3H domain
SUZ PF12752 120 - 166 1.1e-11 SUZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AccB1I GGYRCC 2 cut(s) 880, 960
AciI CCGC 3 cut(s) 6, 670, 791
AclWI GGATC 5 cut(s) 29, 42, 418, 713, 717
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 3 cut(s) 41, 534, 621
AfaI GTAC 2 cut(s) 765, 948
AfiI CCNNNNNNNGG 1 cut(s) 386
AgeI ACCGGT 1 cut(s) 760
AgsI TTSAA 7 cut(s) 119, 281, 358, 490, 525, 775, 934
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 6 cut(s) 26, 97, 392, 473, 533, 872
AluI AGCT 6 cut(s) 26, 97, 392, 473, 533, 872
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 4 cut(s) 80, 560, 590, 654
AlwI GGATC 5 cut(s) 29, 42, 418, 713, 717
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 2 cut(s) 474, 678
AoxI GGCC 4 cut(s) 3, 344, 377, 899
ApeKI GCWGC 1 cut(s) 130
AsiGI ACCGGT 1 cut(s) 760
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 1 cut(s) 757
AsuHPI GGTGA 2 cut(s) 70, 176
AvaI CYCGRG 2 cut(s) 474, 678
AvrII CCTAGG 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 348
BamHI GGATCC 1 cut(s) 34
BanI GGYRCC 2 cut(s) 880, 960
BanII GRGCYC 2 cut(s) 481, 535
BauI CACGAG 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 236, 374
BceAI ACGGC 1 cut(s) 894
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 4 cut(s) 80, 560, 590, 654
BfaI CTAG 3 cut(s) 375, 498, 903
BisI GCNGC 2 cut(s) 6, 131
BlnI CCTAGG 1 cut(s) 374
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 2 cut(s) 7, 132
Bme1390I CCNGG 1 cut(s) 263
BmeT110I CYCGRG 2 cut(s) 474, 678
BmiI GGNNCC 3 cut(s) 36, 882, 962
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 813
Bpu10I CCTNAGC 1 cut(s) 247
Bpu1102I GCTNAGC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 819
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 760
BsaXI ACNNNNNCTCC 4 cut(s) 391, 421, 517, 547
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse118I RCCGGY 1 cut(s) 760
Bse21I CCTNAGG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 6 cut(s) 209, 261, 300, 321, 339, 678
BseRI GAGGAG 5 cut(s) 402, 461, 525, 528, 531
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 868
BshFI GGCC 4 cut(s) 5, 346, 379, 901
BshNI GGYRCC 2 cut(s) 880, 960
BshTI ACCGGT 1 cut(s) 760
BsiHKAI GWGCWC 1 cut(s) 535
BsiHKCI CYCGRG 2 cut(s) 474, 678
BsiSI CCGG 1 cut(s) 761
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 4 cut(s) 80, 560, 590, 654
BsmBI CGTCTC 2 cut(s) 80, 560
BsmI GAATGC 1 cut(s) 940
BsnI GGCC 4 cut(s) 5, 346, 379, 901
BsoBI CYCGRG 2 cut(s) 474, 678
Bsp1286I GDGCHC 2 cut(s) 481, 535
Bsp143I GATC 4 cut(s) 34, 410, 709, 718
Bsp1720I GCTNAGC 1 cut(s) 195
BspACI CCGC 3 cut(s) 6, 670, 791
BspANI GGCC 4 cut(s) 5, 346, 379, 901
BspCNI CTCAG 6 cut(s) 208, 260, 301, 322, 340, 677
BspLI GGNNCC 3 cut(s) 36, 882, 962
BspPI GGATC 5 cut(s) 29, 42, 418, 713, 717
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 2 cut(s) 880, 960
BsrFI RCCGGY 1 cut(s) 760
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 4 cut(s) 34, 410, 709, 718
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 374
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 3 cut(s) 188, 277, 734
Bst6I CTCTTC 2 cut(s) 60, 453
BstC8I GCNNGC 1 cut(s) 841
BstDEI CTNAG 6 cut(s) 195, 247, 309, 330, 348, 664
BstENI CCTNNNNNAGG 1 cut(s) 384
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 4 cut(s) 37, 413, 712, 721
BstMAI GTCTC 4 cut(s) 80, 560, 590, 654
BstMBI GATC 4 cut(s) 34, 410, 709, 718
BstMWI GCNNNNNNNGC 3 cut(s) 94, 205, 878
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 4 cut(s) 5, 346, 379, 901
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 841
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 1 cut(s) 757
Cfr10I RCCGGY 1 cut(s) 760
CseI GACGC 2 cut(s) 815, 927
Csp6I GTAC 2 cut(s) 764, 947
CspAI ACCGGT 1 cut(s) 760
CviAII CATG 3 cut(s) 338, 579, 803
CviQI GTAC 2 cut(s) 764, 947
DdeI CTNAG 6 cut(s) 195, 247, 309, 330, 348, 664
DpnI GATC 4 cut(s) 36, 412, 711, 720
DpnII GATC 4 cut(s) 34, 410, 709, 718
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 60, 453
EarI CTCTTC 2 cut(s) 60, 453
EciI GGCGGA 1 cut(s) 685
Ecl136II GAGCTC 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 374
Eco147I AGGCCT 2 cut(s) 346, 379
Eco24I GRGCYC 2 cut(s) 481, 535
Eco53kI GAGCTC 1 cut(s) 533
Eco57I CTGAAG 3 cut(s) 41, 534, 621
Eco81I CCTNAGG 1 cut(s) 348
Eco88I CYCGRG 2 cut(s) 474, 678
EcoICRI GAGCTC 1 cut(s) 533
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 374
EcoT38I GRGCYC 2 cut(s) 481, 535
ErhI CCWWGG 1 cut(s) 374
Esp3I CGTCTC 2 cut(s) 80, 560
FaeI CATG 3 cut(s) 341, 582, 806
FatI CATG 3 cut(s) 337, 578, 802
Fnu4HI GCNGC 2 cut(s) 6, 131
FriOI GRGCYC 2 cut(s) 481, 535
Fsp4HI GCNGC 2 cut(s) 6, 131
FspBI CTAG 3 cut(s) 375, 498, 903
GlaI GCGC 1 cut(s) 756
GluI GCNGC 2 cut(s) 6, 131
GsaI CCCAGC 1 cut(s) 872
HaeIII GGCC 4 cut(s) 5, 346, 379, 901
HapII CCGG 1 cut(s) 761
HgaI GACGC 2 cut(s) 815, 927
HhaI GCGC 1 cut(s) 757
Hin1II CATG 3 cut(s) 341, 582, 806
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HpaII CCGG 1 cut(s) 761
HphI GGTGA 2 cut(s) 70, 176
Hpy188I TCNGA 8 cut(s) 60, 310, 508, 514, 585, 659, 780, 943
Hpy188III TCNNGA 4 cut(s) 125, 414, 557, 722
HpyAV CCTTC 3 cut(s) 221, 700, 894
HpyCH4III ACNGT 3 cut(s) 188, 277, 734
HpyCH4IV ACGT 2 cut(s) 297, 945
HpyCH4V TGCA 2 cut(s) 578, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 205, 878
HpyF3I CTNAG 6 cut(s) 195, 247, 309, 330, 348, 664
HpySE526I ACGT 2 cut(s) 297, 945
Hsp92II CATG 3 cut(s) 341, 582, 806
HspAI GCGC 1 cut(s) 755
Kzo9I GATC 4 cut(s) 34, 410, 709, 718
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 3 cut(s) 94, 389, 538
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 813
MaeI CTAG 3 cut(s) 375, 498, 903
MaeII ACGT 2 cut(s) 297, 945
MaeIII GTNAC 1 cut(s) 734
MalI GATC 4 cut(s) 36, 412, 711, 720
MboI GATC 4 cut(s) 34, 410, 709, 718
MboII GAAGA 7 cut(s) 47, 161, 436, 470, 478, 513, 527
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 2 cut(s) 481, 535
MluCI AATT 2 cut(s) 613, 810
MlyI GAGTC 3 cut(s) 503, 554, 656
MseI TTAA 2 cut(s) 612, 863
MspI CCGG 1 cut(s) 761
MspR9I CCNGG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 3 cut(s) 94, 205, 878
NdeII GATC 4 cut(s) 34, 410, 709, 718
NlaIII CATG 3 cut(s) 341, 582, 806
NlaIV GGNNCC 3 cut(s) 36, 882, 962
NspI RCATGY 1 cut(s) 582
PceI AGGCCT 2 cut(s) 346, 379
PciSI GCTCTTC 1 cut(s) 60
PctI GAATGC 1 cut(s) 940
PfeI GAWTC 7 cut(s) 258, 313, 334, 427, 518, 787, 967
PinAI ACCGGT 1 cut(s) 760
PkrI GCNGC 2 cut(s) 7, 132
PleI GAGTC 3 cut(s) 503, 554, 656
PpsI GAGTC 3 cut(s) 503, 554, 656
PsiI TTATAA 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 868
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 3 cut(s) 36, 882, 962
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 2 cut(s) 765, 948
RsaNI GTAC 2 cut(s) 764, 947
SacI GAGCTC 1 cut(s) 535
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 612, 863
SatI GCNGC 2 cut(s) 6, 131
Sau3AI GATC 4 cut(s) 34, 410, 709, 718
SchI GAGTC 3 cut(s) 503, 554, 656
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 2 cut(s) 481, 535
SfaNI GCATC 1 cut(s) 813
SmlI CTYRAG 1 cut(s) 834
SmoI CTYRAG 1 cut(s) 834
Sse9I AATT 2 cut(s) 613, 810
SseBI AGGCCT 2 cut(s) 346, 379
SsiI CCGC 3 cut(s) 6, 670, 791
SspMI CTAG 3 cut(s) 375, 498, 903
SstI GAGCTC 1 cut(s) 535
StuI AGGCCT 2 cut(s) 346, 379
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 3 cut(s) 188, 277, 734
TaiI ACGT 2 cut(s) 300, 948
TaqI TCGA 2 cut(s) 48, 558
TasI AATT 2 cut(s) 613, 810
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 7 cut(s) 258, 313, 334, 427, 518, 787, 967
Tru1I TTAA 2 cut(s) 612, 863
Tru9I TTAA 2 cut(s) 612, 863
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 326
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 384
XceI RCATGY 1 cut(s) 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 3 cut(s) 375, 498, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.