Rh1AG128000

R3H domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008327
Physical Location & Seq
Forward (+)
24121910 .. 24128076
6167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG128000.1

Sequence Viewer

Length: 969 bp
ATGGAGGGCTCTGTGGTGGACGATCTCGGAGCCCCGGAGTCATGGGAGGTCGCCGGTGTGGACGAGGCTATGAGCCGCCTGATGCTTTCCAACAAGGACACCCAGCAAGACCTCAACGACGCGTCGTCTTTGGTTTCCTCCGTTTCTGATGGAGCTAAGCTCTCTGAGGACGCCCTCAATCAGGTCGACCAGTTCCTTCGCGAGGCTTTGCAAAACCCTCGGGAGCGCCTATCAATTTTACGAATGGAGCAAGATGTTGAAAAGTTTATCCGTGATCCTATTCAGCAGCAACTGGAGTTTCAGCAGTTGCCCACTTCTTATTTACGCTTGGCTGCACACCGTGTAGCTCAGCATTATGCACTTCAGTCAATGGTTTTGTTAGATAATAACTTGCCTGATGGCTCTGGTTCCAGAATTATTGTTCGCAAAACTCCCGAGTGTCGACTTCCTTTGATTCGGCTTGCAGACATCCCTGTTAGTTTGCCGTCAGAAGAAAGTGGTGTCACTAAAGTTGCAATAAAACAGAGGCCCCAGAAACGGTCACAGATGGCCAACAGTGCAGACTCAAATTCATCAAAGGGGAACAGTTCTAAAAGTGTGGAAGAGAGGAAGGAGGAGTATAACAGGGCCCGTGCGCGAATATTTAATGCTGCTAATAATATTAGTGGCAGTACAAGTGGGAAACCAGAAAGTGAACCAAGACTGCAGGATACTTTACAACATGTTCCCTTGGTGATGTCAAAAGTGGAAGATAAATCAGATGTTTCTGATTTACATTCTAGTAGAGGTTTAATTGATTATTCAACAAGTAGCAGTAGAGCATCTTCTAGAAGTAGGACAGAGAAGGAGCCAGTGGGGAGGTACAGACCAAATAATAGGGTAGCCATATTTAGGGACCGTGAGATTGACAGGAAGGATCCGGATTATGACAGAAGTTACGACAGGTATGGTATTCAATGTTTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 ko03015 ko05164 map03010 map03015 map05164
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

322

Amino Acids

36.18

Weight (kDa)

5.95

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H PF01424 79 - 124 6.7e-08 R3H domain
SUZ PF12752 170 - 218 7.5e-15 SUZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 186, 442
AccII CGCG 3 cut(s) 122, 201, 637
AccIII TCCGGA 1 cut(s) 919
AciI CCGC 1 cut(s) 76
AclWI GGATC 3 cut(s) 269, 911, 924
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 341
AfaI GTAC 2 cut(s) 673, 863
AfiI CCNNNNNNNGG 4 cut(s) 181, 202, 537, 891
AflIII ACRYGT 2 cut(s) 120, 721
AgsI TTSAA 3 cut(s) 260, 804, 956
AhdI GACNNNNNGTC 1 cut(s) 124
AluBI AGCT 3 cut(s) 155, 160, 347
AluI AGCT 3 cut(s) 155, 160, 347
AlwI GGATC 3 cut(s) 269, 911, 924
AlwNI CAGNNNCTG 1 cut(s) 292
Ama87I CYCGRG 2 cut(s) 219, 434
Aor13HI TCCGGA 1 cut(s) 919
AoxI GGCC 3 cut(s) 527, 549, 627
ApaI GGGCCC 1 cut(s) 631
ApeKI GCWGC 3 cut(s) 286, 332, 650
ApoI RAATTY 1 cut(s) 568
AspLEI GCGC 2 cut(s) 228, 637
AspS9I GGNCC 4 cut(s) 528, 627, 628, 895
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 745
AvaI CYCGRG 2 cut(s) 219, 434
AvaII GGWCC 1 cut(s) 895
BaeGI GKGCMC 1 cut(s) 631
BalI TGGCCA 1 cut(s) 551
BamHI GGATCC 1 cut(s) 916
BanII GRGCYC 3 cut(s) 11, 34, 631
BarI GAAGNNNNNNTAC 2 cut(s) 808, 840
BbvI GCAGC 3 cut(s) 298, 319, 637
BccI CCATC 3 cut(s) 143, 392, 541
BceAI ACGGC 1 cut(s) 469
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciVI GTATCC 1 cut(s) 703
BcnI CCSGG 1 cut(s) 35
BfaI CTAG 2 cut(s) 780, 828
BfmI CTRYAG 1 cut(s) 704
BfoI RGCGCY 1 cut(s) 229
BfuI GTATCC 1 cut(s) 703
BisI GCNGC 4 cut(s) 76, 287, 333, 651
BlpI GCTNAGC 2 cut(s) 156, 348
BlsI GCNGC 4 cut(s) 77, 288, 334, 652
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 895
BmeRI GACNNNNNGTC 1 cut(s) 124
BmeT110I CYCGRG 2 cut(s) 219, 434
BmgT120I GGNCC 4 cut(s) 528, 627, 628, 895
BmiI GGNNCC 7 cut(s) 31, 409, 530, 629, 849, 896, 918
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 2 cut(s) 72, 830
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 1 cut(s) 314
Bpu1102I GCTNAGC 2 cut(s) 156, 348
BpuMI CCSGG 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 33, 218, 729
BsaWI WCCGGW 1 cut(s) 919
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 202, 537, 891
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 190, 297, 851
BseAI TCCGGA 1 cut(s) 919
BseDI CCNNGG 3 cut(s) 33, 218, 729
BseGI GGATG 1 cut(s) 468
BseLI CCNNNNNNNGG 4 cut(s) 181, 202, 537, 891
BseMII CTCAG 2 cut(s) 156, 362
BseNI ACTGG 3 cut(s) 190, 297, 851
BseRI GAGGAG 1 cut(s) 629
BseSI GKGCMC 1 cut(s) 631
BseXI GCAGC 3 cut(s) 298, 319, 637
BseYI CCCAGC 1 cut(s) 102
BsgI GTGCAG 2 cut(s) 318, 579
Bsh1236I CGCG 3 cut(s) 122, 201, 637
BshFI GGCC 3 cut(s) 529, 551, 629
BsiHKCI CYCGRG 2 cut(s) 219, 434
BsiSI CCGG 3 cut(s) 35, 54, 920
BslFI GGGAC 1 cut(s) 908
BslI CCNNNNNNNGG 4 cut(s) 181, 202, 537, 891
BsmFI GGGAC 1 cut(s) 908
BsnI GGCC 3 cut(s) 529, 551, 629
BsoBI CYCGRG 2 cut(s) 219, 434
Bsp120I GGGCCC 1 cut(s) 627
Bsp1286I GDGCHC 3 cut(s) 11, 34, 631
Bsp13I TCCGGA 1 cut(s) 919
Bsp143I GATC 3 cut(s) 22, 274, 916
Bsp1720I GCTNAGC 2 cut(s) 156, 348
Bsp68I TCGCGA 1 cut(s) 201
BspACI CCGC 1 cut(s) 76
BspANI GGCC 3 cut(s) 529, 551, 629
BspCNI CTCAG 2 cut(s) 157, 361
BspEI TCCGGA 1 cut(s) 919
BspFNI CGCG 3 cut(s) 122, 201, 637
BspLI GGNNCC 7 cut(s) 31, 409, 530, 629, 849, 896, 918
BspMAI CTGCAG 1 cut(s) 708
BspPI GGATC 3 cut(s) 269, 911, 924
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 3 cut(s) 190, 297, 851
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 33, 218, 729
BssMI GATC 3 cut(s) 22, 274, 916
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 729
Bst4CI ACNGT 5 cut(s) 341, 540, 557, 587, 899
Bst6I CTCTTC 1 cut(s) 597
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 156, 165, 348
BstENI CCTNNNNNAGG 2 cut(s) 179, 200
BstF5I GGATG 1 cut(s) 468
BstFNI CGCG 3 cut(s) 122, 201, 637
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 2 cut(s) 228, 637
BstKTI GATC 3 cut(s) 25, 277, 919
BstMBI GATC 3 cut(s) 22, 274, 916
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 704
BstSLI GKGCMC 1 cut(s) 631
BstUI CGCG 3 cut(s) 122, 201, 637
BstV1I GCAGC 3 cut(s) 298, 319, 637
BstX2I RGATCY 1 cut(s) 916
BstYI RGATCY 1 cut(s) 916
BsuI GTATCC 1 cut(s) 703
BsuRI GGCC 3 cut(s) 529, 551, 629
BtsCI GGATG 1 cut(s) 468
BtsIMutI CAGTG 2 cut(s) 562, 858
BtuMI TCGCGA 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 1 cut(s) 292
CfoI GCGC 2 cut(s) 228, 637
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 528, 627, 628, 895
CseI GACGC 3 cut(s) 111, 128, 179
Csp6I GTAC 2 cut(s) 672, 862
CviAII CATG 2 cut(s) 42, 722
CviQI GTAC 2 cut(s) 672, 862
DdeI CTNAG 3 cut(s) 156, 165, 348
DpnI GATC 3 cut(s) 24, 276, 918
DpnII GATC 3 cut(s) 22, 274, 916
DraIII CACNNNGTG 1 cut(s) 341
DriI GACNNNNNGTC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 597
Eam1105I GACNNNNNGTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 597
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 3 cut(s) 11, 34, 631
Eco47I GGWCC 1 cut(s) 895
Eco57I CTGAAG 1 cut(s) 347
Eco88I CYCGRG 2 cut(s) 219, 434
EcoNI CCTNNNNNAGG 2 cut(s) 179, 200
EcoO109I RGGNCCY 2 cut(s) 528, 627
EcoT14I CCWWGG 1 cut(s) 729
EcoT38I GRGCYC 3 cut(s) 11, 34, 631
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 2 cut(s) 45, 725
FaiI YATR 8 cut(s) 43, 71, 357, 621, 723, 887, 927, 948
FaqI GGGAC 1 cut(s) 908
FatI CATG 2 cut(s) 41, 721
FblI GTMKAC 2 cut(s) 186, 442
Fnu4HI GCNGC 4 cut(s) 76, 287, 333, 651
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 3 cut(s) 11, 34, 631
Fsp4HI GCNGC 4 cut(s) 76, 287, 333, 651
FspBI CTAG 2 cut(s) 780, 828
GlaI GCGC 2 cut(s) 227, 636
GluI GCNGC 4 cut(s) 76, 287, 333, 651
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 3 cut(s) 529, 551, 629
HapII CCGG 3 cut(s) 35, 54, 920
HgaI GACGC 3 cut(s) 111, 128, 179
HhaI GCGC 2 cut(s) 228, 637
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 2 cut(s) 45, 725
Hin6I GCGC 2 cut(s) 226, 635
HinP1I GCGC 2 cut(s) 226, 635
HincII GTYRAC 2 cut(s) 187, 443
HindII GTYRAC 2 cut(s) 187, 443
HinfI GANTC 3 cut(s) 38, 454, 563
HpaII CCGG 3 cut(s) 35, 54, 920
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 5 cut(s) 19, 61, 187, 443, 695
Hpy188I TCNGA 6 cut(s) 29, 148, 166, 490, 760, 769
Hpy188III TCNNGA 6 cut(s) 200, 221, 411, 434, 828, 920
Hpy8I GTNNAC 5 cut(s) 19, 61, 187, 443, 695
Hpy99I CGWCG 2 cut(s) 122, 127
HpyAV CCTTC 4 cut(s) 206, 604, 838, 907
HpyCH4III ACNGT 5 cut(s) 341, 540, 557, 587, 899
HpyCH4V TGCA 7 cut(s) 211, 335, 359, 464, 515, 560, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 3 cut(s) 156, 165, 348
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 2 cut(s) 45, 725
HspAI GCGC 2 cut(s) 226, 635
Kpn2I TCCGGA 1 cut(s) 919
Kzo9I GATC 3 cut(s) 22, 274, 916
LmnI GCTCC 5 cut(s) 29, 152, 223, 247, 847
Lsp1109I GCAGC 3 cut(s) 298, 319, 637
LweI GCATC 2 cut(s) 72, 830
MaeI CTAG 2 cut(s) 780, 828
MaeIII GTNAC 3 cut(s) 502, 540, 935
MalI GATC 3 cut(s) 24, 276, 918
MboI GATC 3 cut(s) 22, 274, 916
MboII GAAGA 4 cut(s) 503, 614, 761, 816
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 3 cut(s) 11, 34, 631
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 4 cut(s) 234, 414, 568, 792
MluI ACGCGT 1 cut(s) 120
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 2 cut(s) 47, 557
MmeI TCCRAC 1 cut(s) 114
Mox20I TGGCCA 1 cut(s) 551
MroI TCCGGA 1 cut(s) 919
MscI TGGCCA 1 cut(s) 551
MseI TTAA 2 cut(s) 645, 791
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 3 cut(s) 35, 54, 920
MspR9I CCNGG 1 cut(s) 35
MvnI CGCG 3 cut(s) 122, 201, 637
MwoI GCNNNNNNNGC 1 cut(s) 557
NciI CCSGG 1 cut(s) 35
NdeII GATC 3 cut(s) 22, 274, 916
NlaIII CATG 2 cut(s) 45, 725
NlaIV GGNNCC 7 cut(s) 31, 409, 530, 629, 849, 896, 918
NmuCI GTSAC 2 cut(s) 502, 540
NruI TCGCGA 1 cut(s) 201
NspI RCATGY 1 cut(s) 725
PciI ACATGT 1 cut(s) 721
PfeI GAWTC 1 cut(s) 454
PkrI GCNGC 4 cut(s) 77, 288, 334, 652
PleI GAGTC 2 cut(s) 46, 557
PpsI GAGTC 2 cut(s) 46, 557
PscI ACATGT 1 cut(s) 721
PspFI CCCAGC 1 cut(s) 102
PspN4I GGNNCC 7 cut(s) 31, 409, 530, 629, 849, 896, 918
PspOMI GGGCCC 1 cut(s) 627
PspPI GGNCC 4 cut(s) 528, 627, 628, 895
PstI CTGCAG 1 cut(s) 708
PstNI CAGNNNCTG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 916
RruI TCGCGA 1 cut(s) 201
RsaI GTAC 2 cut(s) 673, 863
RsaNI GTAC 2 cut(s) 672, 862
SalI GTCGAC 2 cut(s) 185, 441
SaqAI TTAA 2 cut(s) 645, 791
SatI GCNGC 4 cut(s) 76, 287, 333, 651
Sau3AI GATC 3 cut(s) 22, 274, 916
Sau96I GGNCC 4 cut(s) 528, 627, 628, 895
SchI GAGTC 2 cut(s) 47, 557
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 3 cut(s) 11, 34, 631
SetI ASST 9 cut(s) 51, 114, 157, 162, 186, 349, 790, 863, 947
SfaNI GCATC 2 cut(s) 72, 830
SfcI CTRYAG 1 cut(s) 704
SgrAI CRCCGGYG 1 cut(s) 53
SinI GGWCC 1 cut(s) 895
Sse9I AATT 4 cut(s) 234, 414, 568, 792
SsiI CCGC 1 cut(s) 76
SspI AATATT 2 cut(s) 642, 661
SspMI CTAG 2 cut(s) 780, 828
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 5 cut(s) 341, 540, 557, 587, 899
TaqI TCGA 2 cut(s) 186, 442
TasI AATT 4 cut(s) 234, 414, 568, 792
TatI WGTACW 1 cut(s) 671
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 454
Tru1I TTAA 2 cut(s) 645, 791
Tru9I TTAA 2 cut(s) 645, 791
TscAI CASTG 2 cut(s) 562, 858
TseFI GTSAC 2 cut(s) 502, 540
TseI GCWGC 3 cut(s) 286, 332, 650
Tsp45I GTSAC 2 cut(s) 502, 540
TspDTI ATGAA 1 cut(s) 561
TspGWI ACGGA 2 cut(s) 130, 260
TspRI CASTG 2 cut(s) 562, 858
VpaK11BI GGWCC 1 cut(s) 895
XagI CCTNNNNNAGG 2 cut(s) 179, 200
XapI RAATTY 1 cut(s) 568
XbaI TCTAGA 1 cut(s) 827
XceI RCATGY 1 cut(s) 725
XmiI GTMKAC 2 cut(s) 186, 442
XspI CTAG 2 cut(s) 780, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.