Prupe.2G079700_v2.0.a1

R3H domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
12168328 .. 12173736
5409 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G079700.2

Sequence Viewer

Length: 1371 bp
ATGGAGGGCTCTGTGGTGGAGGATCTCGGAGCCCCAGAGTCATGGGAGGTCGCCGGTTTGGACGAGGCCATGAACCGCCTTATGCTTTCCTCCAACAAAGACTCCAAGCCCCAAGACCTCAACGATGTCTCGCCTTTGGTTTCCTCGGCTTCTGATGCTTCTGATAAGTTTTCCGAGGATGCCCTCAATCAAGTCGACCAATTCCTTCGCGAGGCCTTGCAAAACCCTAGAGAGCGCCTGTCAATTTTACGGATGGAGCAAGATGTTGAGAAGTTTATCCGTGATCCTATTCAGCAGCAGCTAGAGTTTCAGCAGTTGCCCACTTCTTATTTACGATTGGCTGCACACCGTGTGGCTCAGCATTATTCACTTCAGTCAATGGTTTTATTAGATAATAATTTACCTGATGGCTCTGGTTCCAGAATTATTGTCCGTAAAACTTCTGAGTGTCGACTCCCTCAGATTCGCCTTGCAGACATACCTGTTAGTTTACCATCAGAAGATGGTGGTGTTACTAAGGTTGCAATAAAACAGAGGCCACAGAAACGGTCACAGACTGCCAACAATGCAAATTCAAATTCGGCAAAAGCAAACAGTTCCAAAACTGTTGAAGAACGGAAAGAAGAGTATAACAGGGCTCGCGCACGAATATTTAATTCAAGTATTAATATGAGTGGCAGTTCAAGTGGGAAATCAGAAAGTGAACCAAGAATGCAGGATACTCCACAACATGTTCCCTTGGTGATGCCAAAGGTGGAAGATAAGTCAAGTGTTTCTGATTTACATTCTGGTAGGGGTTTAATTGAGTCCTCAACAAGTAGCAGTAGAACAGCTAGAAGTAGGCCAGAGAAGGAGCCAGTTGGGCGGTACAAACCAAATAATAGGGTAGCTATATTTAGGGATCGTGAGATTGATCGGAAGGACCCTGATTATGACCGGAGCTATGACAGGTACATGCAAAGATTCGATCCTGGGTTTGGATTCACTGGTGGACCGTATACCATCCAGCCTATGTATACACCTGCATTGAACTACAACACCGAATTTCCTCAACTTGGTGCTGCTCATAGGCCTCAGATTTCTACTGAACATCAGCCTCGGCCTCTTCCACAACACTTACCTGGGCCTTGGGTTGCACCATCAGTCCCTGCAGGAATTGGTTATGGTCATCCAGAGACTATAATCACACCATTTAATGCGAATCATGTTGGTGCGCGATCTACATCTGGCATATATCTGCATTCATCCCAGTATCCTTGTCAGCGCCCTGGAATGCCCTTTCTCCATCCTCATGAACACATTCACCAACCTTTTTCACAGTCTCATCAACAGCAACCTGATGCAAGTTTTGGGTTAGCCCGGCCCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

457

Amino Acids

51.08

Weight (kDa)

7.29

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1030
Acc36I ACCTGC 1 cut(s) 1030
AccI GTMKAC 4 cut(s) 195, 451, 998, 1016
AccII CGCG 3 cut(s) 210, 642, 1216
AciI CCGC 2 cut(s) 76, 865
AclWI GGATC 4 cut(s) 30, 278, 909, 962
AcsI RAATTY 3 cut(s) 571, 577, 1043
AcuI CTGAAG 1 cut(s) 356
AdeI CACNNNGTG 2 cut(s) 350, 352
AfaI GTAC 2 cut(s) 869, 953
AfiI CCNNNNNNNGG 4 cut(s) 211, 977, 1055, 1365
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 5 cut(s) 576, 611, 660, 684, 1030
AjnI CCWGG 3 cut(s) 970, 1120, 1267
AluBI AGCT 4 cut(s) 301, 833, 890, 942
AluI AGCT 4 cut(s) 301, 833, 890, 942
Alw26I GTCTC 3 cut(s) 133, 1169, 1326
AlwI GGATC 4 cut(s) 30, 278, 909, 962
AlwNI CAGNNNCTG 1 cut(s) 1148
AoxI GGCC 8 cut(s) 66, 213, 536, 842, 1070, 1100, 1124, 1361
ApeKI GCWGC 4 cut(s) 295, 298, 341, 1061
ApoI RAATTY 3 cut(s) 571, 577, 1043
AseI ATTAAT 1 cut(s) 666
Asp700I GAANNNNTTC 1 cut(s) 1299
AspLEI GCGC 4 cut(s) 237, 644, 1216, 1266
AspS9I GGNCC 4 cut(s) 922, 992, 1124, 1362
AsuC2I CCSGG 2 cut(s) 1360, 1366
AsuHPI GGTGA 2 cut(s) 754, 1295
AvaII GGWCC 2 cut(s) 922, 992
BanII GRGCYC 3 cut(s) 11, 34, 640
BbvI GCAGC 4 cut(s) 307, 310, 328, 1048
BccI CCATC 7 cut(s) 247, 401, 497, 502, 1010, 1147, 1293
BciT130I CCWGG 3 cut(s) 972, 1122, 1269
BciVI GTATCC 2 cut(s) 712, 1263
BcnI CCSGG 2 cut(s) 1360, 1366
BcoDI GTCTC 3 cut(s) 133, 1169, 1326
BfaI CTAG 3 cut(s) 228, 302, 834
BfmI CTRYAG 1 cut(s) 1149
BfoI RGCGCY 2 cut(s) 238, 1267
BfuAI ACCTGC 1 cut(s) 1030
BfuI GTATCC 2 cut(s) 712, 1263
BglI GCCNNNNNGGC 1 cut(s) 862
BisI GCNGC 4 cut(s) 296, 299, 342, 1062
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 4 cut(s) 297, 300, 343, 1063
Bme1390I CCNGG 5 cut(s) 972, 1122, 1269, 1360, 1366
Bme18I GGWCC 2 cut(s) 922, 992
BmgT120I GGNCC 4 cut(s) 922, 992, 1124, 1362
BmiI GGNNCC 5 cut(s) 31, 418, 855, 924, 1364
BmrFI CCNGG 5 cut(s) 972, 1122, 1269, 1360, 1366
BmrI ACTGGG 1 cut(s) 1243
BmsI GCATC 4 cut(s) 145, 169, 735, 1330
BmuI ACTGGG 1 cut(s) 1243
Bpu1102I GCTNAGC 1 cut(s) 357
BpuMI CCSGG 2 cut(s) 1360, 1366
BsaBI GATNNNNATC 1 cut(s) 1222
BsaJI CCNNGG 9 cut(s) 144, 174, 738, 971, 1097, 1121, 1127, 1267, 1364
BsaWI WCCGGW 1 cut(s) 936
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 977, 1055, 1365
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 857, 991, 1249
Bse8I GATNNNNATC 1 cut(s) 1222
BseBI CCWGG 3 cut(s) 972, 1122, 1269
BseDI CCNNGG 9 cut(s) 144, 174, 738, 971, 1097, 1121, 1127, 1267, 1364
BseGI GGATG 6 cut(s) 184, 258, 1002, 1168, 1244, 1285
BseJI GATNNNNATC 1 cut(s) 1222
BseLI CCNNNNNNNGG 4 cut(s) 211, 977, 1055, 1365
BseMII CTCAG 4 cut(s) 371, 435, 473, 1088
BseNI ACTGG 3 cut(s) 857, 991, 1249
BseXI GCAGC 4 cut(s) 307, 310, 328, 1048
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 3 cut(s) 210, 642, 1216
BshFI GGCC 8 cut(s) 68, 215, 538, 844, 1072, 1102, 1126, 1363
BsiSI CCGG 4 cut(s) 54, 937, 1360, 1366
BslFI GGGAC 1 cut(s) 1130
BslI CCNNNNNNNGG 4 cut(s) 211, 977, 1055, 1365
BsmAI GTCTC 3 cut(s) 133, 1169, 1326
BsmFI GGGAC 1 cut(s) 1130
BsmI GAATGC 3 cut(s) 717, 1240, 1278
BsnI GGCC 8 cut(s) 68, 215, 538, 844, 1072, 1102, 1126, 1363
Bsp1286I GDGCHC 3 cut(s) 11, 34, 640
Bsp143I GATC 6 cut(s) 22, 283, 901, 913, 967, 1217
Bsp1720I GCTNAGC 1 cut(s) 357
Bsp68I TCGCGA 1 cut(s) 210
BspACI CCGC 2 cut(s) 76, 865
BspANI GGCC 8 cut(s) 68, 215, 538, 844, 1072, 1102, 1126, 1363
BspCNI CTCAG 4 cut(s) 370, 436, 472, 1087
BspFNI CGCG 3 cut(s) 210, 642, 1216
BspHI TCATGA 1 cut(s) 1291
BspLI GGNNCC 5 cut(s) 31, 418, 855, 924, 1364
BspMAI CTGCAG 1 cut(s) 1153
BspMI ACCTGC 1 cut(s) 1030
BspPI GGATC 4 cut(s) 30, 278, 909, 962
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 3 cut(s) 857, 991, 1249
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 9 cut(s) 144, 174, 738, 971, 1097, 1121, 1127, 1267, 1364
BssMI GATC 6 cut(s) 22, 283, 901, 913, 967, 1217
BssNAI GTATAC 2 cut(s) 999, 1017
BssT1I CCWWGG 2 cut(s) 738, 1127
Bst1107I GTATAC 2 cut(s) 999, 1017
Bst2UI CCWGG 3 cut(s) 972, 1122, 1269
Bst4CI ACNGT 6 cut(s) 350, 549, 596, 607, 996, 1320
Bst6I CTCTTC 2 cut(s) 618, 1110
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 5 cut(s) 357, 444, 459, 516, 1074
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 6 cut(s) 184, 258, 1002, 1168, 1244, 1285
BstFNI CGCG 3 cut(s) 210, 642, 1216
BstH2I RGCGCY 2 cut(s) 238, 1267
BstHHI GCGC 4 cut(s) 237, 644, 1216, 1266
BstKTI GATC 6 cut(s) 25, 286, 904, 916, 970, 1220
BstMAI GTCTC 3 cut(s) 133, 1169, 1326
BstMBI GATC 6 cut(s) 22, 283, 901, 913, 967, 1217
BstMWI GCNNNNNNNGC 3 cut(s) 155, 566, 862
BstNI CCWGG 3 cut(s) 972, 1122, 1269
BstNSI RCATGY 2 cut(s) 734, 958
BstSCI CCNGG 5 cut(s) 970, 1120, 1267, 1358, 1364
BstSFI CTRYAG 1 cut(s) 1149
BstUI CGCG 3 cut(s) 210, 642, 1216
BstV1I GCAGC 4 cut(s) 307, 310, 328, 1048
BstX2I RGATCY 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 1 cut(s) 22
BstZ17I GTATAC 2 cut(s) 999, 1017
BsuI GTATCC 2 cut(s) 712, 1263
BsuRI GGCC 8 cut(s) 68, 215, 538, 844, 1072, 1102, 1126, 1363
BtsCI GGATG 6 cut(s) 184, 258, 1002, 1168, 1244, 1285
BtsIMutI CAGTG 1 cut(s) 984
BtuMI TCGCGA 1 cut(s) 210
BveI ACCTGC 1 cut(s) 1030
Cac8I GCNNGC 1 cut(s) 640
CaiI CAGNNNCTG 1 cut(s) 1148
CciI TCATGA 1 cut(s) 1291
CfoI GCGC 4 cut(s) 237, 644, 1216, 1266
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 922, 992, 1124, 1362
Csp6I GTAC 2 cut(s) 868, 952
CviAII CATG 6 cut(s) 42, 70, 731, 955, 1205, 1292
CviQI GTAC 2 cut(s) 868, 952
DdeI CTNAG 5 cut(s) 357, 444, 459, 516, 1074
DpnI GATC 6 cut(s) 24, 285, 903, 915, 969, 1219
DpnII GATC 6 cut(s) 22, 283, 901, 913, 967, 1217
DraIII CACNNNGTG 2 cut(s) 350, 352
Eam1104I CTCTTC 2 cut(s) 618, 1110
EarI CTCTTC 2 cut(s) 618, 1110
Eco130I CCWWGG 2 cut(s) 738, 1127
Eco147I AGGCCT 2 cut(s) 215, 1072
Eco24I GRGCYC 3 cut(s) 11, 34, 640
Eco47I GGWCC 2 cut(s) 922, 992
Eco57I CTGAAG 1 cut(s) 356
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 922
EcoRII CCWGG 3 cut(s) 970, 1120, 1267
EcoT14I CCWWGG 2 cut(s) 738, 1127
EcoT38I GRGCYC 3 cut(s) 11, 34, 640
ErhI CCWWGG 2 cut(s) 738, 1127
FaeI CATG 6 cut(s) 45, 73, 734, 958, 1208, 1295
FaqI GGGAC 1 cut(s) 1130
FatI CATG 6 cut(s) 41, 69, 730, 954, 1204, 1291
FblI GTMKAC 4 cut(s) 195, 451, 998, 1016
Fnu4HI GCNGC 4 cut(s) 296, 299, 342, 1062
FokI GGATG 6 cut(s) 191, 265, 989, 1155, 1231, 1272
FriOI GRGCYC 3 cut(s) 11, 34, 640
Fsp4HI GCNGC 4 cut(s) 296, 299, 342, 1062
FspBI CTAG 3 cut(s) 228, 302, 834
GlaI GCGC 4 cut(s) 236, 643, 1215, 1265
GluI GCNGC 4 cut(s) 296, 299, 342, 1062
HaeII RGCGCY 2 cut(s) 238, 1267
HaeIII GGCC 8 cut(s) 68, 215, 538, 844, 1072, 1102, 1126, 1363
HapII CCGG 4 cut(s) 54, 937, 1360, 1366
HhaI GCGC 4 cut(s) 237, 644, 1216, 1266
Hin1II CATG 6 cut(s) 45, 73, 734, 958, 1208, 1295
Hin6I GCGC 4 cut(s) 235, 642, 1214, 1264
HinP1I GCGC 4 cut(s) 235, 642, 1214, 1264
HincII GTYRAC 2 cut(s) 196, 452
HindII GTYRAC 2 cut(s) 196, 452
HinfI GANTC 8 cut(s) 38, 101, 453, 463, 806, 963, 981, 1201
HpaII CCGG 4 cut(s) 54, 937, 1360, 1366
HphI GGTGA 2 cut(s) 754, 1295
Hpy166II GTNNAC 7 cut(s) 196, 452, 491, 704, 992, 999, 1017
Hpy188III TCNNGA 5 cut(s) 209, 420, 905, 1172, 1292
Hpy8I GTNNAC 7 cut(s) 196, 452, 491, 704, 992, 999, 1017
HpyAV CCTTC 3 cut(s) 215, 844, 913
HpyCH4III ACNGT 6 cut(s) 350, 549, 596, 607, 996, 1320
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 566, 862
HpyF3I CTNAG 5 cut(s) 357, 444, 459, 516, 1074
Hsp92II CATG 6 cut(s) 45, 73, 734, 958, 1208, 1295
HspAI GCGC 4 cut(s) 235, 642, 1214, 1264
Kzo9I GATC 6 cut(s) 22, 283, 901, 913, 967, 1217
LmnI GCTCC 4 cut(s) 29, 256, 853, 939
Lsp1109I GCAGC 4 cut(s) 307, 310, 328, 1048
LweI GCATC 4 cut(s) 145, 169, 735, 1330
MaeI CTAG 3 cut(s) 228, 302, 834
MaeIII GTNAC 2 cut(s) 511, 549
MalI GATC 6 cut(s) 24, 285, 903, 915, 969, 1219
MboI GATC 6 cut(s) 22, 283, 901, 913, 967, 1217
MboII GAAGA 5 cut(s) 512, 623, 635, 770, 1097
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 3 cut(s) 11, 34, 640
MlyI GAGTC 4 cut(s) 47, 95, 447, 815
MmeI TCCRAC 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 1299
MseI TTAA 4 cut(s) 654, 666, 800, 1194
MslI CAYNNNNRTG 2 cut(s) 1209, 1290
MspI CCGG 4 cut(s) 54, 937, 1360, 1366
MspR9I CCNGG 5 cut(s) 972, 1122, 1269, 1360, 1366
Mva1269I GAATGC 3 cut(s) 717, 1240, 1278
MvaI CCWGG 3 cut(s) 972, 1122, 1269
MvnI CGCG 3 cut(s) 210, 642, 1216
MwoI GCNNNNNNNGC 3 cut(s) 155, 566, 862
NciI CCSGG 2 cut(s) 1360, 1366
NdeII GATC 6 cut(s) 22, 283, 901, 913, 967, 1217
NlaIII CATG 6 cut(s) 45, 73, 734, 958, 1208, 1295
NlaIV GGNNCC 5 cut(s) 31, 418, 855, 924, 1364
NmeAIII GCCGAG 2 cut(s) 125, 1078
NmuCI GTSAC 1 cut(s) 549
NruI TCGCGA 1 cut(s) 210
NspI RCATGY 2 cut(s) 734, 958
PagI TCATGA 1 cut(s) 1291
PaqCI CACCTGC 1 cut(s) 1030
PceI AGGCCT 2 cut(s) 215, 1072
PciI ACATGT 1 cut(s) 730
PctI GAATGC 3 cut(s) 717, 1240, 1278
PdmI GAANNNNTTC 1 cut(s) 1299
PfeI GAWTC 4 cut(s) 463, 963, 981, 1201
PkrI GCNGC 4 cut(s) 297, 300, 343, 1063
PleI GAGTC 4 cut(s) 46, 95, 447, 814
PpsI GAGTC 4 cut(s) 46, 95, 447, 814
PpuMI RGGWCCY 1 cut(s) 922
PscI ACATGT 1 cut(s) 730
PshBI ATTAAT 1 cut(s) 666
Psp5II RGGWCCY 1 cut(s) 922
Psp6I CCWGG 3 cut(s) 970, 1120, 1267
PspGI CCWGG 3 cut(s) 970, 1120, 1267
PspN4I GGNNCC 5 cut(s) 31, 418, 855, 924, 1364
PspPI GGNCC 4 cut(s) 922, 992, 1124, 1362
PspPPI RGGWCCY 1 cut(s) 922
PstI CTGCAG 1 cut(s) 1153
PstNI CAGNNNCTG 1 cut(s) 1148
PsuI RGATCY 1 cut(s) 22
RruI TCGCGA 1 cut(s) 210
RsaI GTAC 2 cut(s) 869, 953
RsaNI GTAC 2 cut(s) 868, 952
RseI CAYNNNNRTG 2 cut(s) 1209, 1290
SalI GTCGAC 2 cut(s) 194, 450
SaqAI TTAA 4 cut(s) 654, 666, 800, 1194
SatI GCNGC 4 cut(s) 296, 299, 342, 1062
Sau3AI GATC 6 cut(s) 22, 283, 901, 913, 967, 1217
Sau96I GGNCC 4 cut(s) 922, 992, 1124, 1362
SbfI CCTGCAGG 1 cut(s) 1153
SchI GAGTC 4 cut(s) 47, 95, 447, 815
ScrFI CCNGG 5 cut(s) 972, 1122, 1269, 1360, 1366
SdaI CCTGCAGG 1 cut(s) 1153
SduI GDGCHC 3 cut(s) 11, 34, 640
SfaNI GCATC 4 cut(s) 145, 169, 735, 1330
SfcI CTRYAG 1 cut(s) 1149
SinI GGWCC 2 cut(s) 922, 992
SmiMI CAYNNNNRTG 2 cut(s) 1209, 1290
Sse8387I CCTGCAGG 1 cut(s) 1153
SseBI AGGCCT 2 cut(s) 215, 1072
SsiI CCGC 2 cut(s) 76, 865
SspI AATATT 1 cut(s) 651
SspMI CTAG 3 cut(s) 228, 302, 834
StuI AGGCCT 2 cut(s) 215, 1072
StyD4I CCNGG 5 cut(s) 970, 1120, 1267, 1358, 1364
StyI CCWWGG 2 cut(s) 738, 1127
TaaI ACNGT 6 cut(s) 350, 549, 596, 607, 996, 1320
TaqI TCGA 3 cut(s) 195, 451, 966
TfiI GAWTC 4 cut(s) 463, 963, 981, 1201
Tru1I TTAA 4 cut(s) 654, 666, 800, 1194
Tru9I TTAA 4 cut(s) 654, 666, 800, 1194
TscAI CASTG 1 cut(s) 991
TseFI GTSAC 1 cut(s) 549
TseI GCWGC 4 cut(s) 295, 298, 341, 1061
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 3 cut(s) 86, 1233, 1308
TspGWI ACGGA 4 cut(s) 265, 269, 422, 631
TspRI CASTG 1 cut(s) 991
VpaK11BI GGWCC 2 cut(s) 922, 992
VspI ATTAAT 1 cut(s) 666
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 3 cut(s) 571, 577, 1043
XceI RCATGY 2 cut(s) 734, 958
XmiI GTMKAC 4 cut(s) 195, 451, 998, 1016
XmnI GAANNNNTTC 1 cut(s) 1299
XspI CTAG 3 cut(s) 228, 302, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.