Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008327

Physical Location & Seq

Genomic Coordinates Reverse (-)

6210959 .. 6214065

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1065700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACAGTATTGAAGCCTGTCCTTTCATTCACGTACATGCAAAGATTTGATCCTGGGTTTGGATTCAATGGTGGTCCATATGCCATCCAGCCTATGTATACACCTGCATTGAACTACAACACCGAATTTCCTCAACTTGGTTCTGCACACAGGCCTCAGATTTCTACTGAACATCAGGCTTGTCCTCTTCCACAACACCTACCTGGGCCTTGGGTTCCACCGTCGCCCCCTGCTGGAATTGGGTATGGTCATCCGGAGACCATAATCACACCATTTAATCCGAATCATGTTGGTGCACAATCAACATCTGGCATTTATCTGCATTCATCCCAGTATCCTTGTCAGCGCCCTGGAATGGCCTTTGTCCATCCTCATGAACATGTTCACCAACCTTTTTCACAGTCTCATCAACAGCAACCTGATGCAAGTTTTGGGTTAGCCCGGCCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03015 ko05164 map03010 map03015 map05164

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

151

Amino Acids

16.62

Weight (kDa)

6.82

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10770 AT3G10770 AT5G05100
fragaria_vesca	FvH4_7g05730 FvH4_7g05730
malus_domestica	MD02G1255700.v1.1 MD07G1065700.v1.1
prunus_persica	Prupe.2G079700_v2.0.a1 Prupe.2G079700_v2.0.a1
pyrus_communis	pycom02g21660 pycom07g05020
rosa_chinensis	RchiOBHm_Chr1g0332761
rosa_laevigata	RLG00000029646
rosa_multiflora	Rmu_co8256129.1_g000001 Rmu_sc0004239.1_g000021 Rmu_sc0004372.1_g000007
rosa_roxburghii	Rroxscaffold_4G00318000
rosa_rugosa	Rorug01G0104300
rosa_samantha	Rh1AG128000 Rh1BG097200 Rh1CG121700 Rh1DG133700
rosa_wichuraiana	Rw1G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	253
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	5 cut(s)	59, 137, 233, 355, 447
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	13, 67, 112
AjnI	CCWGG	4 cut(s)	52, 202, 349, 446
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	2 cut(s)	251, 408
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	4 cut(s)	152, 206, 357, 443
ApaLI	GTGCAC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	3 cut(s)	74, 206, 444
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	2 cut(s)	92, 375
BciT130I	CCWGG	4 cut(s)	54, 204, 351, 448
BciVI	GTATCC	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	251, 408
BfoI	RGCGCY	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	345
Bme1390I	CCNGG	5 cut(s)	54, 204, 351, 442, 448
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	3 cut(s)	74, 206, 444
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	5 cut(s)	54, 204, 351, 442, 448
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	325
BpuMI	CCSGG	1 cut(s)	442
BsaAI	YACGTR	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	5 cut(s)	53, 203, 209, 349, 446
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 137, 233, 355, 447
Bse1I	ACTGG	1 cut(s)	331
BseAI	TCCGGA	1 cut(s)	253
BseBI	CCWGG	4 cut(s)	54, 204, 351, 448
BseDI	CCNNGG	5 cut(s)	53, 203, 209, 349, 446
BseGI	GGATG	4 cut(s)	84, 250, 326, 367
BseLI	CCNNNNNNNGG	5 cut(s)	59, 137, 233, 355, 447
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	331
BseSI	GKGCMC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	4 cut(s)	154, 208, 359, 445
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	254, 442
BslI	CCNNNNNNNGG	5 cut(s)	59, 137, 233, 355, 447
BsmAI	GTCTC	2 cut(s)	251, 408
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	154, 208, 359, 445
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	4 cut(s)	154, 208, 359, 445
BspCNI	CTCAG	1 cut(s)	169
BspEI	TCCGGA	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	5 cut(s)	53, 203, 209, 349, 446
BssMI	GATC	1 cut(s)	49
BssNAI	GTATAC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	209
Bst1107I	GTATAC	1 cut(s)	99
Bst2UI	CCWGG	4 cut(s)	54, 204, 351, 448
Bst4CI	ACNGT	3 cut(s)	7, 222, 402
Bst6I	CTCTTC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	4 cut(s)	84, 250, 326, 367
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	2 cut(s)	251, 408
BstMBI	GATC	1 cut(s)	49
BstNI	CCWGG	4 cut(s)	54, 204, 351, 448
BstNSI	RCATGY	2 cut(s)	40, 383
BstSCI	CCNGG	5 cut(s)	52, 202, 349, 440, 446
BstSLI	GKGCMC	1 cut(s)	298
BstZ17I	GTATAC	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	154, 208, 359, 445
BtsCI	GGATG	4 cut(s)	84, 250, 326, 367
BveI	ACCTGC	1 cut(s)	112
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	3 cut(s)	74, 206, 444
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	4 cut(s)	37, 287, 374, 380
CviJI	RGCY	8 cut(s)	16, 91, 154, 179, 208, 359, 440, 445
CviKI_1	RGCY	8 cut(s)	16, 91, 154, 179, 208, 359, 440, 445
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	74
EcoRII	CCWGG	4 cut(s)	52, 202, 349, 446
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	4 cut(s)	40, 290, 377, 383
FatI	CATG	4 cut(s)	36, 286, 373, 379
FauNDI	CATATG	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	98
FokI	GGATG	4 cut(s)	71, 237, 313, 354
GlaI	GCGC	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	4 cut(s)	154, 208, 359, 445
HapII	CCGG	2 cut(s)	254, 442
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	40, 290, 377, 383
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	63, 283
HpaII	CCGG	2 cut(s)	254, 442
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	3 cut(s)	99, 296, 385
Hpy188I	TCNGA	2 cut(s)	159, 282
Hpy188III	TCNNGA	2 cut(s)	254, 374
Hpy8I	GTNNAC	3 cut(s)	99, 296, 385
Hpy99I	CGWCG	1 cut(s)	226
HpyCH4III	ACNGT	3 cut(s)	7, 222, 402
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	6 cut(s)	40, 107, 146, 296, 322, 425
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	40, 290, 377, 383
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	49
LweI	GCATC	1 cut(s)	412
MaeII	ACGT	1 cut(s)	32
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	125, 237
MnlI	CCTC	4 cut(s)	141, 165, 195, 381
MroI	TCCGGA	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	4 cut(s)	35, 291, 372, 378
MspI	CCGG	2 cut(s)	254, 442
MspR9I	CCNGG	5 cut(s)	54, 204, 351, 442, 448
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	4 cut(s)	54, 204, 351, 448
NciI	CCSGG	1 cut(s)	442
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	4 cut(s)	40, 290, 377, 383
NlaIV	GGNNCC	1 cut(s)	216
NspI	RCATGY	2 cut(s)	40, 383
PagI	TCATGA	1 cut(s)	373
PaqCI	CACCTGC	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	154
PciI	ACATGT	1 cut(s)	379
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	63, 283
Ppu21I	YACGTR	1 cut(s)	33
PscI	ACATGT	1 cut(s)	379
Psp6I	CCWGG	4 cut(s)	52, 202, 349, 446
PspGI	CCWGG	4 cut(s)	52, 202, 349, 446
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	3 cut(s)	74, 206, 444
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	4 cut(s)	35, 291, 372, 378
SaqAI	TTAA	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	3 cut(s)	74, 206, 444
ScrFI	CCNGG	5 cut(s)	54, 204, 351, 442, 448
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	6 cut(s)	35, 106, 201, 205, 394, 421
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	1 cut(s)	74
SmiMI	CAYNNNNRTG	4 cut(s)	35, 291, 372, 378
Sse9I	AATT	2 cut(s)	125, 237
SseBI	AGGCCT	1 cut(s)	154
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	5 cut(s)	52, 202, 349, 440, 446
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	3 cut(s)	7, 222, 402
TaiI	ACGT	1 cut(s)	35
TasI	AATT	2 cut(s)	125, 237
TfiI	GAWTC	2 cut(s)	63, 283
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TspDTI	ATGAA	3 cut(s)	15, 315, 390
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	2 cut(s)	40, 383
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.