Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004239.1

Orthogroup ID

OG0008327

Physical Location & Seq

Genomic Coordinates Forward (+)

80080 .. 85192

Gene Structure 5113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004239.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atggagggctctgtggcggacgatctcggagccccggagtcatgggaggtcgccggtgtggacgaggctatgagccgcctgatgctctcctccaacaaggacaccaatccccagcaagacctcaacgacgcgtcgtctttggtttcctccgtttctgatggagctggtggcgataagctctctgaggacgccctcaatcaggtcgaccagttccttcgcgaggctttgcaaaaccctcgggagcgcctatcaattttacgaatggagcaagatgttgaaaagtttatccgtgatcctattcagcagcaactggagtttcagcagttgcccacttcttatttacgcttggctgcacaccgtgtagctcagcattatgcacttcagtcaatggttttgttagataataacttgcctgatggctctggttccagaattattgttcgcaaaactccggagtgtcgacttcctttgattcggcttgcagacatgcctgttagtttgccgtcagaagaaagtggtgtcactaaagttgcaataaaacagaggccccagaaacggtcacagatggccaacagtgcagactcaaattcatcaaatcggccccggcatgagaaccaaggtgggttgagatggatcaattcaaaggacaccaacaacaatcgcaacatccattccccccaatccttggtttcaacggaagcttcttccatttatgatagaatgagcttcaaaagtttgtgctctgcttggatgaaggctttgccaaccaccttagagaaagataattcagatagtgatgatgcgtggggtggtacagcaactccagatagttctgatatggtagagagggtggaagaggaacaggtggtggaggtcaaagatatgaatatggacaatcttctgtggatggaggattccaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccacagacggaataggtggtggaggtgaaagatatgaatatggacaatgttctgtggatggaggattccaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccacggagtgagaacagctggtcatggtgctcaagagaagacacgatatgggaggaggactagaggtgcaactgatagtcaaagtaccccatctgatatttcttcaattgccttaagttttgactctatcagtttagacacaatatgggaggaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03015 ko05164 map03010 map03015 map05164

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

412

Amino Acids

45.62

Weight (kDa)

4.71

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10770 AT3G10770 AT5G05100
fragaria_vesca	FvH4_7g05730 FvH4_7g05730
malus_domestica	MD02G1255700.v1.1 MD07G1065700.v1.1
prunus_persica	Prupe.2G079700_v2.0.a1 Prupe.2G079700_v2.0.a1
pyrus_communis	pycom02g21660 pycom07g05020
rosa_chinensis	RchiOBHm_Chr1g0332761
rosa_laevigata	RLG00000029646
rosa_multiflora	Rmu_co8256129.1_g000001 Rmu_sc0004239.1_g000021 Rmu_sc0004372.1_g000007
rosa_roxburghii	Rroxscaffold_4G00318000
rosa_rugosa	Rorug01G0104300
rosa_samantha	Rh1AG128000 Rh1BG097200 Rh1CG121700 Rh1DG133700
rosa_wichuraiana	Rw1G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccI	GTMKAC	2 cut(s)	204, 460
AccII	CGCG	2 cut(s)	131, 219
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	2 cut(s)	17, 76
AclWI	GGATC	2 cut(s)	287, 641
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	189
AdeI	CACNNNGTG	2 cut(s)	359, 1087
AfaI	GTAC	2 cut(s)	814, 1165
AfiI	CCNNNNNNNGG	4 cut(s)	199, 220, 555, 685
AflII	CTTAAG	1 cut(s)	1192
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	5 cut(s)	278, 642, 693, 730, 1185
AhdI	GACNNNNNGTC	1 cut(s)	133
AluBI	AGCT	6 cut(s)	164, 178, 365, 701, 726, 1097
AluI	AGCT	6 cut(s)	164, 178, 365, 701, 726, 1097
Alw21I	GWGCWC	2 cut(s)	743, 1111
AlwI	GGATC	2 cut(s)	287, 641
AlwNI	CAGNNNCTG	1 cut(s)	310
Ama87I	CYCGRG	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	3 cut(s)	545, 567, 599
ApeKI	GCWGC	2 cut(s)	304, 350
ApoI	RAATTY	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	546, 600
AsuC2I	CCSGG	2 cut(s)	35, 604
AsuHPI	GGTGA	1 cut(s)	1001
AvaI	CYCGRG	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	569
BanII	GRGCYC	2 cut(s)	11, 34
BbsI	GAAGAC	3 cut(s)	968, 1083, 1124
Bbv12I	GWGCWC	2 cut(s)	743, 1111
BbvI	GCAGC	2 cut(s)	316, 337
BccI	CCATC	7 cut(s)	152, 410, 559, 624, 901, 1016, 1177
BceAI	ACGGC	1 cut(s)	487
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BclI	TGATCA	2 cut(s)	942, 1057
BcnI	CCSGG	2 cut(s)	35, 604
BfaI	CTAG	2 cut(s)	1140, 1237
BfoI	RGCGCY	1 cut(s)	247
BfrI	CTTAAG	1 cut(s)	1192
BisI	GCNGC	3 cut(s)	76, 305, 351
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	3 cut(s)	77, 306, 352
Bme1390I	CCNGG	2 cut(s)	35, 604
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	2 cut(s)	546, 600
BmiI	GGNNCC	4 cut(s)	31, 427, 548, 602
BmrFI	CCNGG	2 cut(s)	35, 604
BmsI	GCATC	2 cut(s)	72, 790
BpiI	GAAGAC	3 cut(s)	968, 1083, 1124
BpmI	CTGGAG	2 cut(s)	332, 807
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	1095
BpuMI	CCSGG	2 cut(s)	35, 604
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	6 cut(s)	33, 236, 602, 616, 684, 1081
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 220, 555, 685
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	208, 315
BseAI	TCCGGA	1 cut(s)	451
BseDI	CCNNGG	6 cut(s)	33, 236, 602, 616, 684, 1081
BseGI	GGATG	4 cut(s)	666, 756, 912, 1027
BseLI	CCNNNNNNNGG	4 cut(s)	199, 220, 555, 685
BseMII	CTCAG	2 cut(s)	174, 380
BseNI	ACTGG	2 cut(s)	208, 315
BseRI	GAGGAG	2 cut(s)	79, 1147
BseXI	GCAGC	2 cut(s)	316, 337
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	2 cut(s)	336, 597
Bsh1236I	CGCG	2 cut(s)	131, 219
BshFI	GGCC	3 cut(s)	547, 569, 601
BsiHKAI	GWGCWC	2 cut(s)	743, 1111
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	4 cut(s)	35, 54, 452, 604
BslI	CCNNNNNNNGG	4 cut(s)	199, 220, 555, 685
BsnI	GGCC	3 cut(s)	547, 569, 601
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	4 cut(s)	11, 34, 743, 1111
Bsp13I	TCCGGA	1 cut(s)	451
Bsp143I	GATC	5 cut(s)	22, 292, 633, 942, 1057
Bsp1720I	GCTNAGC	1 cut(s)	366
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	2 cut(s)	17, 76
BspANI	GGCC	3 cut(s)	547, 569, 601
BspCNI	CTCAG	2 cut(s)	175, 379
BspEI	TCCGGA	1 cut(s)	451
BspFNI	CGCG	2 cut(s)	131, 219
BspLI	GGNNCC	4 cut(s)	31, 427, 548, 602
BspPI	GGATC	2 cut(s)	287, 641
BspTI	CTTAAG	1 cut(s)	1192
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	208, 315
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	6 cut(s)	33, 236, 602, 616, 684, 1081
BssMI	GATC	5 cut(s)	22, 292, 633, 942, 1057
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	616, 684
Bst4CI	ACNGT	3 cut(s)	359, 558, 575
Bst6I	CTCTTC	1 cut(s)	849
BstACI	GRCGYC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	1192
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	3 cut(s)	183, 366, 772
BstDSI	CCRYGG	1 cut(s)	1081
BstENI	CCTNNNNNAGG	2 cut(s)	197, 218
BstF5I	GGATG	4 cut(s)	666, 756, 912, 1027
BstFNI	CGCG	2 cut(s)	131, 219
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	5 cut(s)	25, 295, 636, 945, 1060
BstMBI	GATC	5 cut(s)	22, 292, 633, 942, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	2 cut(s)	33, 602
BstUI	CGCG	2 cut(s)	131, 219
BstV1I	GCAGC	2 cut(s)	316, 337
BstV2I	GAAGAC	3 cut(s)	968, 1083, 1124
BsuRI	GGCC	3 cut(s)	547, 569, 601
BtgI	CCRYGG	1 cut(s)	1081
BtsCI	GGATG	4 cut(s)	666, 756, 912, 1027
BtsIMutI	CAGTG	1 cut(s)	580
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	480
CaiI	CAGNNNCTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	546, 600
CseI	GACGC	3 cut(s)	120, 137, 197
Csp6I	GTAC	2 cut(s)	813, 1164
CviAII	CATG	6 cut(s)	42, 487, 608, 946, 1061, 1103
CviQI	GTAC	2 cut(s)	813, 1164
DdeI	CTNAG	3 cut(s)	183, 366, 772
DpnI	GATC	5 cut(s)	24, 294, 635, 944, 1059
DpnII	GATC	5 cut(s)	22, 292, 633, 942, 1057
DraIII	CACNNNGTG	2 cut(s)	359, 1087
DriI	GACNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	849
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	849
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	616, 684
Eco24I	GRGCYC	2 cut(s)	11, 34
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	237
EcoNI	CCTNNNNNAGG	2 cut(s)	197, 218
EcoO109I	RGGNCCY	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	616, 684
EcoT38I	GRGCYC	2 cut(s)	11, 34
ErhI	CCWWGG	2 cut(s)	616, 684
FaeI	CATG	6 cut(s)	45, 490, 611, 949, 1064, 1106
FatI	CATG	6 cut(s)	41, 486, 607, 945, 1060, 1102
FbaI	TGATCA	2 cut(s)	942, 1057
FblI	GTMKAC	2 cut(s)	204, 460
Fnu4HI	GCNGC	3 cut(s)	76, 305, 351
FokI	GGATG	4 cut(s)	653, 763, 919, 1034
FriOI	GRGCYC	2 cut(s)	11, 34
Fsp4HI	GCNGC	3 cut(s)	76, 305, 351
FspBI	CTAG	2 cut(s)	1140, 1237
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	76, 305, 351
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	2 cut(s)	332, 807
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	3 cut(s)	547, 569, 601
HapII	CCGG	4 cut(s)	35, 54, 452, 604
HgaI	GACGC	3 cut(s)	120, 137, 197
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	6 cut(s)	45, 490, 611, 949, 1064, 1106
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	2 cut(s)	205, 461
HindII	GTYRAC	2 cut(s)	205, 461
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	6 cut(s)	38, 472, 581, 914, 1029, 1202
HpaII	CCGG	4 cut(s)	35, 54, 452, 604
HphI	GGTGA	1 cut(s)	1001
Hpy166II	GTNNAC	3 cut(s)	61, 205, 461
Hpy188I	TCNGA	7 cut(s)	29, 157, 184, 508, 790, 835, 1174
Hpy188III	TCNNGA	6 cut(s)	218, 239, 429, 452, 824, 1112
Hpy8I	GTNNAC	3 cut(s)	61, 205, 461
Hpy99I	CGWCG	2 cut(s)	131, 136
HpyAV	CCTTC	4 cut(s)	224, 748, 925, 1040
HpyCH4III	ACNGT	3 cut(s)	359, 558, 575
HpyCH4V	TGCA	7 cut(s)	229, 353, 377, 482, 533, 578, 1148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	3 cut(s)	183, 366, 772
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	6 cut(s)	45, 490, 611, 949, 1064, 1106
HspAI	GCGC	1 cut(s)	244
Kpn2I	TCCGGA	1 cut(s)	451
Ksp22I	TGATCA	2 cut(s)	942, 1057
Kzo9I	GATC	5 cut(s)	22, 292, 633, 942, 1057
LmnI	GCTCC	4 cut(s)	29, 161, 241, 265
Lsp1109I	GCAGC	2 cut(s)	316, 337
LweI	GCATC	2 cut(s)	72, 790
MaeI	CTAG	2 cut(s)	1140, 1237
MaeIII	GTNAC	2 cut(s)	520, 558
MalI	GATC	5 cut(s)	24, 294, 635, 944, 1059
MboI	GATC	5 cut(s)	22, 292, 633, 942, 1057
MboII	GAAGA	8 cut(s)	521, 696, 866, 890, 973, 1088, 1129, 1173
MfeI	CAATTG	1 cut(s)	1185
MhlI	GDGCHC	4 cut(s)	11, 34, 743, 1111
MlsI	TGGCCA	1 cut(s)	569
MluI	ACGCGT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	3 cut(s)	47, 575, 1196
MmeI	TCCRAC	1 cut(s)	117
Mox20I	TGGCCA	1 cut(s)	569
MroI	TCCGGA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	1 cut(s)	1193
Msp20I	TGGCCA	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	1097
MspCI	CTTAAG	1 cut(s)	1192
MspI	CCGG	4 cut(s)	35, 54, 452, 604
MspR9I	CCNGG	2 cut(s)	35, 604
MunI	CAATTG	1 cut(s)	1185
MvnI	CGCG	2 cut(s)	131, 219
MwoI	GCNNNNNNNGC	1 cut(s)	575
NciI	CCSGG	2 cut(s)	35, 604
NdeII	GATC	5 cut(s)	22, 292, 633, 942, 1057
NlaIII	CATG	6 cut(s)	45, 490, 611, 949, 1064, 1106
NlaIV	GGNNCC	4 cut(s)	31, 427, 548, 602
NmuCI	GTSAC	2 cut(s)	520, 558
NruI	TCGCGA	1 cut(s)	219
NspI	RCATGY	1 cut(s)	490
PfeI	GAWTC	3 cut(s)	472, 914, 1029
PflMI	CCANNNNNTGG	1 cut(s)	685
PkrI	GCNGC	3 cut(s)	77, 306, 352
PleI	GAGTC	3 cut(s)	46, 575, 1196
PpsI	GAGTC	3 cut(s)	46, 575, 1196
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	4 cut(s)	31, 427, 548, 602
PspPI	GGNCC	2 cut(s)	546, 600
PstNI	CAGNNNCTG	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	1097
RruI	TCGCGA	1 cut(s)	219
RsaI	GTAC	2 cut(s)	814, 1165
RsaNI	GTAC	2 cut(s)	813, 1164
SalI	GTCGAC	2 cut(s)	203, 459
SaqAI	TTAA	1 cut(s)	1193
SatI	GCNGC	3 cut(s)	76, 305, 351
Sau3AI	GATC	5 cut(s)	22, 292, 633, 942, 1057
Sau96I	GGNCC	2 cut(s)	546, 600
SchI	GAGTC	3 cut(s)	47, 575, 1196
ScrFI	CCNGG	2 cut(s)	35, 604
SduI	GDGCHC	4 cut(s)	11, 34, 743, 1111
SfaNI	GCATC	2 cut(s)	72, 790
SgrAI	CRCCGGYG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	1110, 1192
SmoI	CTYRAG	2 cut(s)	1110, 1192
SsiI	CCGC	2 cut(s)	17, 76
SspMI	CTAG	2 cut(s)	1140, 1237
StyD4I	CCNGG	2 cut(s)	33, 602
StyI	CCWWGG	2 cut(s)	616, 684
TaaI	ACNGT	3 cut(s)	359, 558, 575
TaqI	TCGA	2 cut(s)	204, 460
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	3 cut(s)	472, 914, 1029
Tru1I	TTAA	1 cut(s)	1193
Tru9I	TTAA	1 cut(s)	1193
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	2 cut(s)	520, 558
TseI	GCWGC	2 cut(s)	304, 350
Tsp45I	GTSAC	2 cut(s)	520, 558
TspDTI	ATGAA	6 cut(s)	579, 767, 899, 974, 1014, 1089
TspGWI	ACGGA	5 cut(s)	139, 278, 710, 987, 1098
TspRI	CASTG	1 cut(s)	580
Van91I	CCANNNNNTGG	1 cut(s)	685
Vha464I	CTTAAG	1 cut(s)	1192
XagI	CCTNNNNNAGG	2 cut(s)	197, 218
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	1 cut(s)	490
XmiI	GTMKAC	2 cut(s)	204, 460
XspI	CTAG	2 cut(s)	1140, 1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.