Rmu_co8256129.1_g000001

R3H domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8256129.1
OG0008327
Physical Location & Seq
Forward (+)
76 .. 799
724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8256129.1_g000001.1.cds

Sequence Viewer

Length: 567 bp
atggccaacagtgcagactcaaattcatcaaaggggaacagttctaaaagtgtggaagagaggaaggaggagtataacagggcccgtgcgcgaatatttaatgctgctaataatattagtggcagtacaagtgggaaaccagaaagtgaaccaagacagcaggatacttcacaacatgttcccttggtgatgtcaaaagtggaagataaatcagatgtttctgatttacattctagtagaggtttaattgattattcaacaagtagcagtagagcatcttctagaagtaggacagagaaggagccagtggggaggtacaaaccaaataatagggtagccatatttagggaccgtgagattgacaggaaggatccggattatgacagaagttacgacaggtacatgcaaagatttgatcctgggttcggattcagtggtggaccatacaccatccagcccatgtatactcctgcattgaattataacactgaattccctcaacttggttctacccacgggcctcagatttctactgaacatcaacctcgcccacttccacaacactta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 ko03015 ko05164 map03010 map03015 map05164
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

189

Amino Acids

21.35

Weight (kDa)

8.78

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AccI GTMKAC 1 cut(s) 464
AccII CGCG 1 cut(s) 91
AccIII TCCGGA 1 cut(s) 373
AclWI GGATC 3 cut(s) 365, 378, 410
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 22, 491
AfaI GTAC 3 cut(s) 127, 317, 401
AfiI CCNNNNNNNGG 3 cut(s) 345, 425, 503
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 258, 478
AjnI CCWGG 1 cut(s) 418
AlwI GGATC 3 cut(s) 365, 378, 410
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 3 cut(s) 3, 81, 518
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 22, 491
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 5 cut(s) 81, 82, 349, 440, 518
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 2 cut(s) 349, 440
BaeGI GKGCMC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 85
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 458
BciT130I CCWGG 1 cut(s) 420
BciVI GTATCC 1 cut(s) 157
BfaI CTAG 2 cut(s) 234, 282
BfuI GTATCC 1 cut(s) 157
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 2 cut(s) 349, 440
BmgT120I GGNCC 5 cut(s) 81, 82, 349, 440, 518
BmiI GGNNCC 4 cut(s) 83, 303, 350, 372
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 284
BsaJI CCNNGG 3 cut(s) 183, 419, 514
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 425, 503
Bse1I ACTGG 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 183, 419, 514
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 3 cut(s) 345, 425, 503
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 3 cut(s) 5, 83, 520
BsiSI CCGG 1 cut(s) 374
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 3 cut(s) 345, 425, 503
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 3 cut(s) 5, 83, 520
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 85
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 2 cut(s) 370, 415
BspANI GGCC 3 cut(s) 5, 83, 520
BspCNI CTCAG 1 cut(s) 535
BspEI TCCGGA 1 cut(s) 373
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 4 cut(s) 83, 303, 350, 372
BspPI GGATC 3 cut(s) 365, 378, 410
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 3 cut(s) 183, 419, 514
BssMI GATC 2 cut(s) 370, 415
BssNAI GTATAC 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 3 cut(s) 11, 41, 353
Bst6I CTCTTC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 522
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 1 cut(s) 450
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 2 cut(s) 373, 418
BstMBI GATC 2 cut(s) 370, 415
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 2 cut(s) 179, 406
BstSCI CCNGG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZ17I GTATAC 1 cut(s) 465
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 3 cut(s) 5, 83, 520
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 1 cut(s) 450
BtsIMutI CAGTG 4 cut(s) 16, 312, 439, 486
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 5 cut(s) 81, 82, 349, 440, 518
Csp6I GTAC 3 cut(s) 126, 316, 400
CviAII CATG 3 cut(s) 176, 403, 460
CviJI RGCY 6 cut(s) 5, 83, 304, 338, 457, 520
CviKI_1 RGCY 6 cut(s) 5, 83, 304, 338, 457, 520
CviQI GTAC 3 cut(s) 126, 316, 400
DdeI CTNAG 1 cut(s) 522
DpnI GATC 2 cut(s) 372, 417
DpnII GATC 2 cut(s) 370, 415
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 349, 440
EcoO109I RGGNCCY 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 179, 406, 463
FaiI YATR 9 cut(s) 75, 177, 341, 381, 404, 445, 461, 465, 483
FaqI GGGAC 1 cut(s) 362
FatI CATG 3 cut(s) 175, 402, 459
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 2 cut(s) 234, 282
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 3 cut(s) 5, 83, 520
HapII CCGG 1 cut(s) 374
HhaI GCGC 1 cut(s) 91
Hin1II CATG 3 cut(s) 179, 406, 463
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 2 cut(s) 17, 429
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 3 cut(s) 149, 440, 465
Hpy188I TCNGA 4 cut(s) 214, 223, 428, 525
Hpy188III TCNNGA 2 cut(s) 282, 374
Hpy8I GTNNAC 3 cut(s) 149, 440, 465
HpyAV CCTTC 3 cut(s) 58, 292, 361
HpyCH4III ACNGT 3 cut(s) 11, 41, 353
HpyCH4V TGCA 3 cut(s) 14, 406, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 522
Hsp92II CATG 3 cut(s) 179, 406, 463
HspAI GCGC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 370, 415
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 284
MaeI CTAG 2 cut(s) 234, 282
MaeIII GTNAC 1 cut(s) 389
MalI GATC 2 cut(s) 372, 417
MboI GATC 2 cut(s) 370, 415
MboII GAAGA 3 cut(s) 68, 215, 270
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 22, 246, 478, 491
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 7 cut(s) 54, 61, 233, 306, 507, 531, 555
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 373
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 99, 245
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 370, 415
NlaIII CATG 3 cut(s) 179, 406, 463
NlaIV GGNNCC 4 cut(s) 83, 303, 350, 372
NspI RCATGY 2 cut(s) 179, 406
PciI ACATGT 1 cut(s) 175
PfeI GAWTC 1 cut(s) 429
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PscI ACATGT 1 cut(s) 175
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 4 cut(s) 83, 303, 350, 372
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 5 cut(s) 81, 82, 349, 440, 518
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 3 cut(s) 127, 317, 401
RsaNI GTAC 3 cut(s) 126, 316, 400
SaqAI TTAA 2 cut(s) 99, 245
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 370, 415
Sau96I GGNCC 5 cut(s) 81, 82, 349, 440, 518
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 85
SetI ASST 4 cut(s) 244, 317, 401, 547
SfaNI GCATC 1 cut(s) 284
SinI GGWCC 2 cut(s) 349, 440
Sse9I AATT 4 cut(s) 22, 246, 478, 491
SspI AATATT 2 cut(s) 96, 115
SspMI CTAG 2 cut(s) 234, 282
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 3 cut(s) 11, 41, 353
TasI AATT 4 cut(s) 22, 246, 478, 491
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 429
Tru1I TTAA 2 cut(s) 99, 245
Tru9I TTAA 2 cut(s) 99, 245
TscAI CASTG 4 cut(s) 16, 312, 439, 493
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 15
TspRI CASTG 4 cut(s) 16, 312, 439, 493
VpaK11BI GGWCC 2 cut(s) 349, 440
XapI RAATTY 2 cut(s) 22, 491
XbaI TCTAGA 1 cut(s) 281
XceI RCATGY 2 cut(s) 179, 406
XmiI GTMKAC 1 cut(s) 464
XspI CTAG 2 cut(s) 234, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.