Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014928

Physical Location & Seq

Genomic Coordinates Reverse (-)

3709131 .. 3711617

Gene Structure 2487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGCAACGAGTACGATTATCTGTTCAAGCTTTTGTTGATCGGTGACTCCTCTGTTGGAAAATCGTGTCTTCTTCTCCGATTCGCTGATGATGCTTACATTGACAGCTACATAAGCACCATTGGTGTTGACTTCAAAATTAGGACGATTGAGCAGGATGGGAAGACGATTAAGCTGCAAATTTGGGATACTGCTGGACAGGAGCGTTTCAGGACCATCACTAGCAGCTATTACAGAGGAGCTCATGGAATCATTATTGTTTATGACTGTACTGAGATGGAAAGCTTCAACAATGTGAAGCAGTGGTTGAGTGAGATCGATAGATATGCCAATGAGAGTGTTTGCAAGCTTTTAATCGGTAACAAGAATGATATGGTTGAAAGCAAAGTTGTTTCCACCGAAACTGGAAGGGCCTTAGCAGATGAGCTTGGAATTCCCTTTCTTGAGACCAGTGCCAAGGATTCTATTAACGTTGAACAGGCATTCTTAACTATTGCTGGCGAGATAAAAAAGAAAATGGGAAGCCAAACGAATGCAAACAAGACATCTGGTCCTGGAACTGTCCAAATGAAAGGTCAGCCAATCCAACAGAACAATGGCGGTTGCTGCGGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006888 GO:0008092 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017022 GO:0030742 GO:0031090 GO:0031984 GO:0032029 GO:0032036 GO:0032588 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0080115 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

205

Amino Acids

22.72

Weight (kDa)

5.15

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 130	2.6e-16	ADP-ribosylation factor family
Ras	PF00071	10 - 170	6.7e-65	Ras family
Roc	PF08477	10 - 124	5.9e-36	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11730
fragaria_vesca	FvH4_5g28100
malus_domestica	MD08G1244400.v1.1 MD15G1439100.v1.1
prunus_persica	Prupe.1G581900_v2.0.a1
pyrus_communis	pycom08g21200 pycom15g38720
rosa_chinensis	RchiOBHm_Chr7g0220361
rosa_laevigata	RLG00000002226
rosa_multiflora	Rmu_sc0000099.1_g000014
rosa_roxburghii	Rroxscaffold_3G00239450
rosa_rugosa	Rorug07G0193200
rosa_samantha	Rh7AG334600 Rh7CG352300 Rh7DG331300
rosa_wichuraiana	Rw7G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	600, 609
AclI	AACGTT	1 cut(s)	471
AcsI	RAATTY	2 cut(s)	180, 432
AfaI	GTAC	2 cut(s)	14, 271
AgsI	TTSAA	5 cut(s)	28, 136, 289, 380, 476
AhdI	GACNNNNNGTC	1 cut(s)	549
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	8 cut(s)	31, 108, 175, 228, 242, 285, 349, 427
AluI	AGCT	8 cut(s)	31, 108, 175, 228, 242, 285, 349, 427
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	440
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	3 cut(s)	175, 225, 606
ApoI	RAATTY	2 cut(s)	180, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspS9I	GGNCC	3 cut(s)	213, 411, 551
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	2 cut(s)	213, 551
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	2 cut(s)	62, 170
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	162, 237, 593
BccI	CCATC	3 cut(s)	152, 224, 271
BcgI	CGANNNNNNTGC	4 cut(s)	157, 191, 308, 342
BciT130I	CCWGG	1 cut(s)	555
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	176, 226, 607
BlsI	GCNGC	3 cut(s)	177, 227, 608
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	2 cut(s)	213, 551
BmeRI	GACNNNNNGTC	1 cut(s)	549
BmgT120I	GGNCC	3 cut(s)	213, 411, 551
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	2 cut(s)	62, 170
Bpu10I	CCTNAGC	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	409, 450
BseBI	CCWGG	1 cut(s)	555
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	409, 450
BseRI	GAGGAG	2 cut(s)	40, 252
BseXI	GCAGC	3 cut(s)	162, 237, 593
BshFI	GGCC	1 cut(s)	413
BshVI	ATCGAT	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	440
BsmI	GAATGC	2 cut(s)	482, 538
BsnI	GGCC	1 cut(s)	413
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	39, 315
BspACI	CCGC	2 cut(s)	600, 609
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	409, 450
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	2 cut(s)	39, 315
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	269, 562
BstC8I	GCNNGC	2 cut(s)	347, 499
BstDEI	CTNAG	2 cut(s)	273, 415
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	2 cut(s)	42, 318
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	2 cut(s)	39, 315
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 114, 606
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	553
BstV1I	GCAGC	3 cut(s)	162, 237, 593
BstV2I	GAAGAC	2 cut(s)	62, 170
Bsu15I	ATCGAT	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	413
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	308, 457
Cac8I	GCNNGC	2 cut(s)	347, 499
Cfr13I	GGNCC	3 cut(s)	213, 411, 551
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	13, 270
CviAII	CATG	1 cut(s)	245
CviQI	GTAC	2 cut(s)	13, 270
DdeI	CTNAG	2 cut(s)	273, 415
DpnI	GATC	2 cut(s)	41, 317
DpnII	GATC	2 cut(s)	39, 315
DriI	GACNNNNNGTC	1 cut(s)	549
Eam1105I	GACNNNNNGTC	1 cut(s)	549
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	213, 551
Eco53kI	GAGCTC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	1 cut(s)	248
FaiI	YATR	5 cut(s)	113, 246, 264, 327, 374
FatI	CATG	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	176, 226, 607
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	176, 226, 607
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	3 cut(s)	176, 226, 607
HaeIII	GGCC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	3 cut(s)	29, 283, 347
HinfI	GANTC	4 cut(s)	47, 81, 249, 461
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	211, 443
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	402
HpyCH4III	ACNGT	2 cut(s)	269, 562
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	3 cut(s)	178, 345, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 114, 606
HpyF3I	CTNAG	2 cut(s)	273, 415
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	39, 315
LmnI	GCTCC	2 cut(s)	202, 239
Lsp1109I	GCAGC	3 cut(s)	162, 237, 593
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	44, 359
MalI	GATC	2 cut(s)	41, 317
MboI	GATC	2 cut(s)	39, 315
MboII	GAAGA	3 cut(s)	62, 65, 175
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	138, 180, 432
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	2 cut(s)	37, 610
MnlI	CCTC	2 cut(s)	61, 230
MseI	TTAA	4 cut(s)	171, 353, 468, 488
MspR9I	CCNGG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	482, 538
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	3 cut(s)	92, 114, 606
NdeII	GATC	2 cut(s)	39, 315
NlaIII	CATG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	44
PctI	GAATGC	2 cut(s)	482, 538
PfeI	GAWTC	3 cut(s)	81, 249, 461
PfoI	TCCNGGA	1 cut(s)	553
PkrI	GCNGC	3 cut(s)	177, 227, 608
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspPI	GGNCC	3 cut(s)	213, 411, 551
RsaI	GTAC	2 cut(s)	14, 271
RsaNI	GTAC	2 cut(s)	13, 270
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	4 cut(s)	171, 353, 468, 488
SatI	GCNGC	3 cut(s)	176, 226, 607
Sau3AI	GATC	2 cut(s)	39, 315
Sau96I	GGNCC	3 cut(s)	213, 411, 551
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	82
SinI	GGWCC	2 cut(s)	213, 551
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	138, 180, 432
SsiI	CCGC	2 cut(s)	600, 609
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	269, 562
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	1 cut(s)	318
TasI	AATT	3 cut(s)	138, 180, 432
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	81, 249, 461
Tru1I	TTAA	4 cut(s)	171, 353, 468, 488
Tru9I	TTAA	4 cut(s)	171, 353, 468, 488
TscAI	CASTG	2 cut(s)	308, 457
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	3 cut(s)	175, 225, 606
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	584
TspRI	CASTG	2 cut(s)	308, 457
VpaK11BI	GGWCC	2 cut(s)	213, 551
XapI	RAATTY	2 cut(s)	180, 432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.