Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0014928

Physical Location & Seq

Genomic Coordinates Reverse (-)

20752338 .. 20755683

Gene Structure 3346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21200.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGCAACGAATACGATTATTTGTTCAAGCTTCTGCTAATTGGGGACTCGTCCGTTGGAAAATCTTGCTTGCTTCTCAGATTCGCTGATGATTCCTATGTTGACAGCTACATAAGCACCATTGGAGTTGATTTTAAAATCAGAACAGTGGAGCTGGATGGCAAGACGGTCAAGCTGCAGATTTGGGATACTGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTACTACCGAGGAGCACATGGGATAATTATTGTGTATGATGTTACTGAGATGGAGAGCTTCAATAACGTGAAGCAGTGGCTGAATGAGATTGACAGATATGCAAGTGACAGTGTGTGCAAGCTTCTAGTTGGTAATAAATGTGATTTAGTTGAGAACAAGGTTGTCGATACACAAACTGCCAAGGCTTTTGCTGATGAGCTTGGGATTCCTTTCCTCGAGACAAGTGCTAAAGACTCGATCAATGTTGAGCAGGCTTTCTTAACCATGTCTGCCGAGATAAAGAAAAAAATGGGAAGCCAACCAACTGGTAACAAGTCGAGCGGAACTGTTGAAATGAGGAGCCAGCCAATTCAGCAGAACAGCAATTGTTGCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006888 GO:0008092 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017022 GO:0030742 GO:0031090 GO:0031984 GO:0032029 GO:0032036 GO:0032588 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0080115 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

202

Amino Acids

22.45

Weight (kDa)

5.01

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11730
fragaria_vesca	FvH4_5g28100
malus_domestica	MD08G1244400.v1.1 MD15G1439100.v1.1
prunus_persica	Prupe.1G581900_v2.0.a1
pyrus_communis	pycom08g21200 pycom15g38720
rosa_chinensis	RchiOBHm_Chr7g0220361
rosa_laevigata	RLG00000002226
rosa_multiflora	Rmu_sc0000099.1_g000014
rosa_roxburghii	Rroxscaffold_3G00239450
rosa_rugosa	Rorug07G0193200
rosa_samantha	Rh7AG334600 Rh7CG352300 Rh7DG331300
rosa_wichuraiana	Rw7G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	549
AciI	CCGC	2 cut(s)	549, 600
AgsI	TTSAA	3 cut(s)	28, 289, 560
AluBI	AGCT	7 cut(s)	31, 108, 154, 175, 285, 349, 427
AluI	AGCT	7 cut(s)	31, 108, 154, 175, 285, 349, 427
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	440
AlwNI	CAGNNNCTG	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	443
ApeKI	GCWGC	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	152, 271
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	235, 408
Bse1I	ACTGG	1 cut(s)	538
BseDI	CCNNGG	2 cut(s)	235, 408
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	91, 264
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	252, 580
BseXI	GCAGC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	465
BspACI	CCGC	2 cut(s)	549, 600
BspCNI	CTCAG	2 cut(s)	90, 265
BspLI	GGNNCC	1 cut(s)	569
BspMAI	CTGCAG	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	2 cut(s)	235, 408
BssMI	GATC	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	408
Bst4CI	ACNGT	4 cut(s)	148, 169, 338, 556
BstAPI	GCANNNNNTGC	1 cut(s)	597
BstC8I	GCNNGC	4 cut(s)	71, 347, 480, 572
BstDEI	CTNAG	2 cut(s)	77, 273
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	465
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 580, 597
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	3 cut(s)	153, 308, 343
Cac8I	GCNNGC	4 cut(s)	71, 347, 480, 572
CaiI	CAGNNNCTG	1 cut(s)	307
CviAII	CATG	2 cut(s)	245, 493
DdeI	CTNAG	2 cut(s)	77, 273
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
DraI	TTTAAA	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	248, 496
FaiI	YATR	7 cut(s)	99, 113, 218, 246, 264, 327, 494
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	244, 492
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	248, 496
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	2 cut(s)	29, 347
HinfI	GANTC	6 cut(s)	47, 81, 92, 207, 433, 461
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	80, 143
Hpy188III	TCNNGA	2 cut(s)	211, 445
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4III	ACNGT	4 cut(s)	148, 169, 338, 556
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	3 cut(s)	178, 329, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 580, 597
HpyF3I	CTNAG	2 cut(s)	77, 273
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	248, 496
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	4 cut(s)	151, 202, 239, 567
LpnPI	CCDG	7 cut(s)	140, 180, 185, 196, 464, 519, 584
Lsp1109I	GCAGC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	4 cut(s)	227, 268, 332, 536
MalI	GATC	1 cut(s)	467
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	1 cut(s)	465
MfeI	CAATTG	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	4 cut(s)	39, 252, 576, 592
MlyI	GAGTC	2 cut(s)	41, 455
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	230, 452, 558
MseI	TTAA	2 cut(s)	135, 488
MunI	CAATTG	1 cut(s)	592
MwoI	GCNNNNNNNGC	3 cut(s)	114, 580, 597
NdeII	GATC	1 cut(s)	465
NlaIII	CATG	2 cut(s)	248, 496
NlaIV	GGNNCC	1 cut(s)	569
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	443
PfeI	GAWTC	4 cut(s)	81, 92, 207, 433
PkrI	GCNGC	1 cut(s)	177
PleI	GAGTC	2 cut(s)	41, 455
PpsI	GAGTC	2 cut(s)	41, 455
PspN4I	GGNNCC	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	135, 488
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	465
SchI	GAGTC	2 cut(s)	41, 455
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	9 cut(s)	33, 110, 156, 177, 287, 297, 351, 390, 429
SfcI	CTRYAG	1 cut(s)	176
Sfr274I	CTCGAG	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	4 cut(s)	39, 252, 576, 592
SsiI	CCGC	2 cut(s)	549, 600
SspMI	CTAG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	148, 169, 338, 556
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	4 cut(s)	393, 444, 464, 545
TasI	AATT	4 cut(s)	39, 252, 576, 592
TfiI	GAWTC	4 cut(s)	81, 92, 207, 433
Tru1I	TTAA	2 cut(s)	135, 488
Tru9I	TTAA	2 cut(s)	135, 488
TscAI	CASTG	3 cut(s)	153, 308, 343
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	3 cut(s)	153, 308, 343
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.