Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000099.1

Orthogroup ID

OG0014928

Physical Location & Seq

Genomic Coordinates Forward (+)

64806 .. 69311

Gene Structure 4506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000099.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgagcaacgaatatgattacttgttcaagctcttgctaattggggactcctccgtcggaaaatcgtgtttgcttgtcagattcgctgacgattcctatgtggacagctacgtcagcaccattggagttgattttaaaatcaggactgtggagctggatgggaagactgtcaagctgcagatttgggatactgctggacaagagcgattcaggaccataacaagcagttactaccgaggagcccatgggataattattgtctatgatgttactgagatggagagcttcaataatgtcaagcagtggctgaatgagattgacagatatgcaaacgaaagtgtgtgcaagcttttagtgggaaataaatgtgatttagttgagaacaaggttgttgacacgcaaacaggaaaggctttagctgatgagcttggtatccctttcctcgagacaagtgctaaagatgctatcaatgttgagcaggctttcttgaccatggctggcgagataaagaaaaaaatgggcaaccaaccaactgctaacaagtcaagtgaaactgttcaaatgaaggggaatcccattcagcagaatagcaattgttgtgtggtctggagtagcgtggtcttccttcccctgatcattaccggggcacttcatcctctcaagaaccatttgcagtttgttgatccaactctctaccaaagtcggattagtgtaccagtgaagatcttagctccgagttgtctagcttgctctaaactacaattgggactagagctccgacaattgggactagagctccggagtgctgctataaagcgctcaaaaaaccgcttcaaggggcttgctgcccatgtaagagctcatcctcctctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006888 GO:0008092 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017022 GO:0030742 GO:0031090 GO:0031984 GO:0032029 GO:0032036 GO:0032588 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0080115 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

291

Amino Acids

32.38

Weight (kDa)

8.58

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11730
fragaria_vesca	FvH4_5g28100
malus_domestica	MD08G1244400.v1.1 MD15G1439100.v1.1
prunus_persica	Prupe.1G581900_v2.0.a1
pyrus_communis	pycom08g21200 pycom15g38720
rosa_chinensis	RchiOBHm_Chr7g0220361
rosa_laevigata	RLG00000002226
rosa_multiflora	Rmu_sc0000099.1_g000014
rosa_roxburghii	Rroxscaffold_3G00239450
rosa_rugosa	Rorug07G0193200
rosa_samantha	Rh7AG334600 Rh7CG352300 Rh7DG331300
rosa_wichuraiana	Rw7G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	53, 110
AccIII	TCCGGA	1 cut(s)	798
AciI	CCGC	1 cut(s)	829
AclWI	GGATC	1 cut(s)	677
AfaI	GTAC	1 cut(s)	714
AfeI	AGCGCT	1 cut(s)	818
AfiI	CCNNNNNNNGG	2 cut(s)	784, 835
AgsI	TTSAA	4 cut(s)	28, 289, 560, 835
Alw21I	GWGCWC	3 cut(s)	777, 798, 862
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	677
AlwNI	CAGNNNCTG	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	443
Aor13HI	TCCGGA	1 cut(s)	798
Aor51HI	AGCGCT	1 cut(s)	818
ApeKI	GCWGC	3 cut(s)	175, 806, 845
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	819
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	649
BanII	GRGCYC	4 cut(s)	244, 777, 798, 862
BbsI	GAAGAC	2 cut(s)	170, 613
Bbv12I	GWGCWC	3 cut(s)	777, 798, 862
BbvI	GCAGC	3 cut(s)	162, 793, 832
BccI	CCATC	2 cut(s)	152, 271
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciVI	GTATCC	2 cut(s)	181, 443
BclI	TGATCA	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	3 cut(s)	743, 770, 791
BfmI	CTRYAG	2 cut(s)	176, 872
BfoI	RGCGCY	1 cut(s)	820
BfuI	GTATCC	2 cut(s)	181, 443
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	3 cut(s)	176, 807, 846
BlsI	GCNGC	3 cut(s)	177, 808, 847
Bme1390I	CCNGG	1 cut(s)	643
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	643
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	2 cut(s)	170, 613
BpmI	CTGGAG	1 cut(s)	628
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	643
BsaJI	CCNNGG	4 cut(s)	235, 244, 492, 642
BsaWI	WCCGGW	1 cut(s)	798
BsaXI	ACNNNNNCTCC	4 cut(s)	759, 780, 789, 810
Bsc4I	CCNNNNNNNGG	2 cut(s)	784, 835
Bse1I	ACTGG	1 cut(s)	716
BseAI	TCCGGA	1 cut(s)	798
BseDI	CCNNGG	4 cut(s)	235, 244, 492, 642
BseGI	GGATG	3 cut(s)	163, 652, 862
BseLI	CCNNNNNNNGG	2 cut(s)	784, 835
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	716
BseRI	GAGGAG	3 cut(s)	40, 252, 858
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	3 cut(s)	162, 793, 832
BsiHKAI	GWGCWC	3 cut(s)	777, 798, 862
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	642, 799
BslFI	GGGAC	3 cut(s)	59, 780, 801
BslI	CCNNNNNNNGG	2 cut(s)	784, 835
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	3 cut(s)	59, 780, 801
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	5 cut(s)	244, 649, 777, 798, 862
Bsp13I	TCCGGA	1 cut(s)	798
Bsp143I	GATC	3 cut(s)	633, 682, 723
Bsp19I	CCATGG	2 cut(s)	244, 492
BspACI	CCGC	1 cut(s)	829
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	798
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	716
BssECI	CCNNGG	4 cut(s)	235, 244, 492, 642
BssMI	GATC	3 cut(s)	633, 682, 723
BssT1I	CCWWGG	2 cut(s)	244, 492
Bst4CI	ACNGT	3 cut(s)	148, 169, 556
BstC8I	GCNNGC	5 cut(s)	347, 480, 499, 748, 843
BstDEI	CTNAG	2 cut(s)	273, 727
BstDSI	CCRYGG	2 cut(s)	244, 492
BstF5I	GGATG	3 cut(s)	163, 652, 862
BstH2I	RGCGCY	1 cut(s)	820
BstHHI	GCGC	1 cut(s)	819
BstKTI	GATC	3 cut(s)	636, 685, 726
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	3 cut(s)	633, 682, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 461
BstSCI	CCNGG	1 cut(s)	641
BstSFI	CTRYAG	2 cut(s)	176, 872
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	162, 793, 832
BstV2I	GAAGAC	2 cut(s)	170, 613
BstX2I	RGATCY	1 cut(s)	723
BstYI	RGATCY	1 cut(s)	723
BsuI	GTATCC	2 cut(s)	181, 443
BtgI	CCRYGG	2 cut(s)	244, 492
BtsCI	GGATG	3 cut(s)	163, 652, 862
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	308, 723
Cac8I	GCNNGC	5 cut(s)	347, 480, 499, 748, 843
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	1 cut(s)	819
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	3 cut(s)	245, 493, 851
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	2 cut(s)	273, 727
DpnI	GATC	3 cut(s)	635, 684, 725
DpnII	GATC	3 cut(s)	633, 682, 723
DraI	TTTAAA	1 cut(s)	136
DrdI	GACNNNNNNGTC	2 cut(s)	53, 110
DseDI	GACNNNNNNGTC	2 cut(s)	53, 110
Ecl136II	GAGCTC	3 cut(s)	775, 796, 860
Eco130I	CCWWGG	2 cut(s)	244, 492
Eco24I	GRGCYC	4 cut(s)	244, 777, 798, 862
Eco47I	GGWCC	1 cut(s)	213
Eco47III	AGCGCT	1 cut(s)	818
Eco53kI	GAGCTC	3 cut(s)	775, 796, 860
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	3 cut(s)	775, 796, 860
EcoT14I	CCWWGG	2 cut(s)	244, 492
EcoT38I	GRGCYC	4 cut(s)	244, 777, 798, 862
ErhI	CCWWGG	2 cut(s)	244, 492
FaeI	CATG	3 cut(s)	248, 496, 854
FaiI	YATR	9 cut(s)	15, 99, 218, 246, 264, 327, 494, 812, 852
FaqI	GGGAC	3 cut(s)	59, 780, 801
FatI	CATG	3 cut(s)	244, 492, 850
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	176, 807, 846
FokI	GGATG	3 cut(s)	170, 639, 849
FriOI	GRGCYC	4 cut(s)	244, 777, 798, 862
Fsp4HI	GCNGC	3 cut(s)	176, 807, 846
FspBI	CTAG	3 cut(s)	743, 770, 791
GlaI	GCGC	1 cut(s)	818
GluI	GCNGC	3 cut(s)	176, 807, 846
GsuI	CTGGAG	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	820
HapII	CCGG	2 cut(s)	642, 799
HhaI	GCGC	1 cut(s)	819
Hin1II	CATG	3 cut(s)	248, 496, 854
Hin6I	GCGC	1 cut(s)	817
HinP1I	GCGC	1 cut(s)	817
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	5 cut(s)	47, 81, 92, 207, 571
HpaII	CCGG	2 cut(s)	642, 799
Hpy166II	GTNNAC	3 cut(s)	103, 394, 713
Hpy188I	TCNGA	5 cut(s)	59, 80, 705, 735, 779
Hpy188III	TCNNGA	7 cut(s)	142, 211, 445, 487, 607, 661, 799
Hpy8I	GTNNAC	3 cut(s)	103, 394, 713
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	559, 635
HpyCH4III	ACNGT	3 cut(s)	148, 169, 556
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	178, 329, 345, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 461
HpyF3I	CTNAG	2 cut(s)	273, 727
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	248, 496, 854
HspAI	GCGC	1 cut(s)	817
Kpn2I	TCCGGA	1 cut(s)	798
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	3 cut(s)	633, 682, 723
LmnI	GCTCC	5 cut(s)	151, 239, 736, 780, 801
Lsp1109I	GCAGC	3 cut(s)	162, 793, 832
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	3 cut(s)	743, 770, 791
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	227, 268
MalI	GATC	3 cut(s)	635, 684, 725
MboI	GATC	3 cut(s)	633, 682, 723
MboII	GAAGA	3 cut(s)	175, 613, 733
MfeI	CAATTG	3 cut(s)	592, 761, 782
MflI	RGATCY	1 cut(s)	723
MhlI	GDGCHC	5 cut(s)	244, 649, 777, 798, 862
MluCI	AATT	5 cut(s)	39, 252, 592, 761, 782
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	4 cut(s)	37, 683, 710, 802
MnlI	CCTC	5 cut(s)	61, 230, 452, 666, 876
MroI	TCCGGA	1 cut(s)	798
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	1 cut(s)	135
MspI	CCGG	2 cut(s)	642, 799
MspR9I	CCNGG	1 cut(s)	643
MunI	CAATTG	3 cut(s)	592, 761, 782
MwoI	GCNNNNNNNGC	2 cut(s)	114, 461
NciI	CCSGG	1 cut(s)	643
NcoI	CCATGG	2 cut(s)	244, 492
NdeII	GATC	3 cut(s)	633, 682, 723
NlaIII	CATG	3 cut(s)	248, 496, 854
NlaIV	GGNNCC	1 cut(s)	241
PaeR7I	CTCGAG	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	4 cut(s)	81, 92, 207, 571
PkrI	GCNGC	3 cut(s)	177, 808, 847
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp124BI	GAGCTC	3 cut(s)	777, 798, 862
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	723
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
SacI	GAGCTC	3 cut(s)	777, 798, 862
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	176, 807, 846
Sau3AI	GATC	3 cut(s)	633, 682, 723
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	643
SduI	GDGCHC	5 cut(s)	244, 649, 777, 798, 862
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	2 cut(s)	176, 872
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	443, 659
SmoI	CTYRAG	2 cut(s)	443, 659
Sse9I	AATT	5 cut(s)	39, 252, 592, 761, 782
SsiI	CCGC	1 cut(s)	829
SspMI	CTAG	3 cut(s)	743, 770, 791
SstI	GAGCTC	3 cut(s)	777, 798, 862
StyD4I	CCNGG	1 cut(s)	641
StyI	CCWWGG	2 cut(s)	244, 492
TaaI	ACNGT	3 cut(s)	148, 169, 556
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	444
TasI	AATT	5 cut(s)	39, 252, 592, 761, 782
TfiI	GAWTC	4 cut(s)	81, 92, 207, 571
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	308, 723
TseI	GCWGC	3 cut(s)	175, 806, 845
TspDTI	ATGAA	2 cut(s)	578, 641
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	308, 723
VpaK11BI	GGWCC	1 cut(s)	213
XhoI	CTCGAG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	3 cut(s)	743, 770, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.