Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014928

Physical Location & Seq

Genomic Coordinates Reverse (-)

53897255 .. 53900575

Gene Structure 3321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1439100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGCAACGAATACGATTATTTGTTCAAGCTTTTGCTAATCGGGGACTCGTCCGTTGGAAAATCTTGCTTGCTTCTCAGATTCGCTGATGATTCCTATGTAGACAGCTACATAAGCACCATTGGAGTTGATTTTAAAATCAGAACAGTGGAGCTGGATGGCAAGACAGCCAAGCTGCAGATTTGGGATACTGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTACTACCGAGGAGCACATGGGATAATTATTGTGTATGATGTTACCGAGATGGAGAGCTTCAATAATGTGAAGCAGTGGCTGAATGAGATTGACAGATATGCAAATGACAGCGTGTGCAAGCTTCTGGTTGGTAATAAATGTGATTTAGTTGAGAACAAGGTTGTTGACACACAAACTGCTAAGGCTTTTGCTGACGAGCTTGGGATCCCTTTCCTTGAGACAAGTGCTAAGGACTCGATCAATGTTGAGCAGGCTTTCTTAACCATGGCTGCCGAGATAAAGAAAAAAATGGGAAACCAACCAGCTGCTAACAGGTCGAGCGGAGCTGTAGAAATGAAGGGCCAGCCAATTCAGCAAAACAGCAATTGTTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006888 GO:0008092 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017022 GO:0030742 GO:0031090 GO:0031984 GO:0032029 GO:0032036 GO:0032588 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0080115 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

202

Amino Acids

22.38

Weight (kDa)

5.01

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 132	9.3e-16	ADP-ribosylation factor family
Ras	PF00071	10 - 170	3.2e-67	Ras family
Roc	PF08477	10 - 124	1.5e-36	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 166	5.3e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11730
fragaria_vesca	FvH4_5g28100
malus_domestica	MD08G1244400.v1.1 MD15G1439100.v1.1
prunus_persica	Prupe.1G581900_v2.0.a1
pyrus_communis	pycom08g21200 pycom15g38720
rosa_chinensis	RchiOBHm_Chr7g0220361
rosa_laevigata	RLG00000002226
rosa_multiflora	Rmu_sc0000099.1_g000014
rosa_roxburghii	Rroxscaffold_3G00239450
rosa_rugosa	Rorug07G0193200
rosa_samantha	Rh7AG334600 Rh7CG352300 Rh7DG331300
rosa_wichuraiana	Rw7G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	1 cut(s)	549
AclWI	GGATC	2 cut(s)	427, 440
AgsI	TTSAA	2 cut(s)	28, 289
AluBI	AGCT	9 cut(s)	31, 108, 154, 175, 285, 349, 427, 533, 554
AluI	AGCT	9 cut(s)	31, 108, 154, 175, 285, 349, 427, 533, 554
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	2 cut(s)	427, 440
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	3 cut(s)	175, 497, 533
AspS9I	GGNCC	1 cut(s)	568
BamHI	GGATCC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	162, 484, 520
BccI	CCATC	2 cut(s)	152, 271
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	440
BfmI	CTRYAG	2 cut(s)	176, 555
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	176, 498, 534
BlsI	GCNGC	3 cut(s)	177, 499, 535
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	434
Bpu10I	CCTNAGC	2 cut(s)	408, 456
BpuEI	CTTGAG	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	235, 492
BseDI	CCNNGG	2 cut(s)	235, 492
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	162, 484, 520
BshFI	GGCC	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	570
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	432, 465
Bsp19I	CCATGG	1 cut(s)	492
BspACI	CCGC	1 cut(s)	549
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	434
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	2 cut(s)	427, 440
BsrBI	CCGCTC	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	235, 492
BssMI	GATC	2 cut(s)	432, 465
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	4 cut(s)	71, 347, 480, 572
BstDEI	CTNAG	3 cut(s)	77, 408, 456
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	2 cut(s)	435, 468
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	2 cut(s)	432, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 580
BstSFI	CTRYAG	2 cut(s)	176, 555
BstV1I	GCAGC	3 cut(s)	162, 484, 520
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	570
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	153, 308
Cac8I	GCNNGC	4 cut(s)	71, 347, 480, 572
CaiI	CAGNNNCTG	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	568
CspCI	CAANNNNNGTGG	1 cut(s)	580
CviAII	CATG	2 cut(s)	245, 493
DdeI	CTNAG	3 cut(s)	77, 408, 456
DpnI	GATC	2 cut(s)	434, 467
DpnII	GATC	2 cut(s)	432, 465
DraI	TTTAAA	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	248, 496
FaiI	YATR	7 cut(s)	99, 113, 218, 246, 264, 327, 494
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	244, 492
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	176, 498, 534
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	3 cut(s)	176, 498, 534
GluI	GCNGC	3 cut(s)	176, 498, 534
HaeIII	GGCC	1 cut(s)	570
Hin1II	CATG	2 cut(s)	248, 496
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	29, 347
HinfI	GANTC	5 cut(s)	47, 81, 92, 207, 461
Hpy166II	GTNNAC	2 cut(s)	103, 394
Hpy188I	TCNGA	2 cut(s)	80, 143
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	103, 394
HpyAV	CCTTC	1 cut(s)	559
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	178, 329, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 580
HpyF3I	CTNAG	3 cut(s)	77, 408, 456
Hsp92II	CATG	2 cut(s)	248, 496
Kzo9I	GATC	2 cut(s)	432, 465
LmnI	GCTCC	4 cut(s)	151, 202, 239, 551
LpnPI	CCDG	9 cut(s)	140, 180, 185, 196, 338, 464, 526, 543, 584
Lsp1109I	GCAGC	3 cut(s)	162, 484, 520
MaeIII	GTNAC	2 cut(s)	227, 268
MalI	GATC	2 cut(s)	434, 467
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	2 cut(s)	432, 465
MfeI	CAATTG	1 cut(s)	592
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	252, 576, 592
MlyI	GAGTC	2 cut(s)	41, 455
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	135, 488
MspA1I	CMGCKG	1 cut(s)	533
MunI	CAATTG	1 cut(s)	592
MwoI	GCNNNNNNNGC	2 cut(s)	114, 580
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	2 cut(s)	432, 465
NlaIII	CATG	2 cut(s)	248, 496
NlaIV	GGNNCC	1 cut(s)	434
NmeAIII	GCCGAG	1 cut(s)	526
PfeI	GAWTC	3 cut(s)	81, 92, 207
PkrI	GCNGC	3 cut(s)	177, 499, 535
PleI	GAGTC	2 cut(s)	41, 455
PpsI	GAGTC	2 cut(s)	41, 455
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	432
PvuII	CAGCTG	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	135, 488
SatI	GCNGC	3 cut(s)	176, 498, 534
Sau3AI	GATC	2 cut(s)	432, 465
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	2 cut(s)	41, 455
SduI	GDGCHC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	176, 555
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	252, 576, 592
SsiI	CCGC	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	464, 545
TasI	AATT	3 cut(s)	252, 576, 592
TfiI	GAWTC	3 cut(s)	81, 92, 207
Tru1I	TTAA	2 cut(s)	135, 488
Tru9I	TTAA	2 cut(s)	135, 488
TscAI	CASTG	2 cut(s)	153, 308
TseI	GCWGC	3 cut(s)	175, 497, 533
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	153, 308
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.