Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014928

Physical Location & Seq

Genomic Coordinates Forward (+)

16434422 .. 16437278

Gene Structure 2857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAATAATGCTTCAGCATCCAGTAGTTTAAGAGCAGCTTTCTCACACTGTGTGCAGCAAGTCCGAAATTATGATTACCATCACTACCTTTGCCTCCTTGAACTCCCCCATAACATGCGGAAGGCTGCATTTGCAGTCCGTGCCTTGAATGTTGAAACAGCTCGTGCAATGGATGTTGCTTCTGATCCCAGGATTGGTCTTATGCGTCTTGTCTGGTGGCAAGAAGCCATAGACAAAATCTATGCCAACAAGTCGATTGAGCACCCAACAGCACAAGCCCTCTTGTCAGTCGTACATGAGAACAAAATTAGCAAGGCATGGTTGAAACGGTCTGTAGAAGCTCGCATCAATGATGCAAGAAAGGAGATTGATGACGCCCCAGAAAAAATCGAAGACTTGGAAAAATATGCTGAAGACACCATGTCAACTAATCTTTACATGACACTACAAGCTGGTGGTATCAGATCCACAGCAGCCGATCATGCAGCATCACATATTGGAAAAGCAAGTGGGCTTCTTCTGCTAATTAAGTCACTGCCATACCATGCTAACCGGAACCACCACTTTTCTTATATCCCAACTGAAGTGGCAGCCAAGCATGGATTGTTGGTAAAACACGGCAGTCAAGCAGAGATCCTTTTAGACTCTCGTGAGGGCTTAAGTGAAGCTGTTTTTGAGATGGCATCAGTGGCTAATGTCCATTTGCAGAAGGCTCGTGATTTAGCCGGTACAGTACCTGCAGAAGCTCATCCTGTGCTGCTGCCAGCAGTGCCTGCCCAAGTTCTACTGGACTCCCTGAGGCGGGTGAATTTTGATGTTTTTGACCCGAGGTTAGCACGAGGGATCCTAGGTACGCCTCCTTTATTGTATCAGTTGAAATTAAAGTGGCACTCTTGGAGAGGAAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006888 GO:0008092 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017022 GO:0030742 GO:0031090 GO:0031984 GO:0032029 GO:0032036 GO:0032588 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0080115 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

303

Amino Acids

33.86

Weight (kDa)

8.93

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	21 - 278	5.3e-52	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11730
fragaria_vesca	FvH4_5g28100
malus_domestica	MD08G1244400.v1.1 MD15G1439100.v1.1
prunus_persica	Prupe.1G581900_v2.0.a1
pyrus_communis	pycom08g21200 pycom15g38720
rosa_chinensis	RchiOBHm_Chr7g0220361
rosa_laevigata	RLG00000002226
rosa_multiflora	Rmu_sc0000099.1_g000014
rosa_roxburghii	Rroxscaffold_3G00239450
rosa_rugosa	Rorug07G0193200
rosa_samantha	Rh7AG334600 Rh7CG352300 Rh7DG331300
rosa_wichuraiana	Rw7G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	745
AciI	CCGC	2 cut(s)	118, 802
AclWI	GGATC	5 cut(s)	179, 459, 628, 838, 851
AcsI	RAATTY	1 cut(s)	808
AcuI	CTGAAG	2 cut(s)	432, 603
AcyI	GRCGYC	1 cut(s)	375
AdeI	CACNNNGTG	2 cut(s)	50, 52
AfaI	GTAC	4 cut(s)	294, 730, 735, 853
AfiI	CCNNNNNNNGG	3 cut(s)	194, 801, 802
AflII	CTTAAG	1 cut(s)	658
AgsI	TTSAA	5 cut(s)	101, 148, 155, 325, 877
AhdI	GACNNNNNGTC	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	6 cut(s)	38, 161, 341, 452, 668, 746
AluI	AGCT	6 cut(s)	38, 161, 341, 452, 668, 746
Alw21I	GWGCWC	1 cut(s)	264
AlwI	GGATC	5 cut(s)	179, 459, 628, 838, 851
AlwNI	CAGNNNCTG	2 cut(s)	737, 773
Ama87I	CYCGRG	1 cut(s)	826
ApeKI	GCWGC	8 cut(s)	35, 55, 125, 473, 485, 590, 757, 760
ApoI	RAATTY	1 cut(s)	808
AspA2I	CCTAGG	1 cut(s)	847
AsuHPI	GGTGA	1 cut(s)	817
AvaI	CYCGRG	1 cut(s)	826
AvrII	CCTAGG	1 cut(s)	847
AxyI	CCTNAGG	1 cut(s)	797
BamHI	GGATCC	1 cut(s)	843
BauI	CACGAG	4 cut(s)	162, 648, 714, 837
BbsI	GAAGAC	2 cut(s)	399, 420
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	8 cut(s)	47, 67, 112, 485, 497, 602, 744, 747
BccI	CCATC	2 cut(s)	87, 673
BceAI	ACGGC	1 cut(s)	634
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	1 cut(s)	190
BfaI	CTAG	1 cut(s)	848
BfmI	CTRYAG	2 cut(s)	333, 738
BfrI	CTTAAG	1 cut(s)	658
BfuAI	ACCTGC	1 cut(s)	745
BisI	GCNGC	8 cut(s)	36, 56, 126, 474, 486, 591, 758, 761
BlnI	CCTAGG	1 cut(s)	847
BlsI	GCNGC	8 cut(s)	37, 57, 127, 475, 487, 592, 759, 762
Bme1390I	CCNGG	1 cut(s)	190
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	826
BmiI	GGNNCC	2 cut(s)	557, 845
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	5 cut(s)	26, 343, 354, 497, 692
BpiI	GAAGAC	2 cut(s)	399, 420
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	188, 827, 847
BsaWI	WCCGGW	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 801, 802
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	2 cut(s)	21, 792
Bse21I	CCTNAGG	1 cut(s)	797
Bse3DI	GCAATG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	188, 827, 847
BseGI	GGATG	3 cut(s)	17, 178, 748
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	194, 801, 802
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	788
BseNI	ACTGG	2 cut(s)	21, 792
BseXI	GCAGC	8 cut(s)	47, 67, 112, 485, 497, 602, 744, 747
BsgI	GTGCAG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	826
BsiSI	CCGG	2 cut(s)	553, 726
BslI	CCNNNNNNNGG	3 cut(s)	194, 801, 802
BsoBI	CYCGRG	1 cut(s)	826
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	5 cut(s)	184, 464, 478, 633, 843
BspACI	CCGC	2 cut(s)	118, 802
BspCNI	CTCAG	1 cut(s)	789
BspLI	GGNNCC	2 cut(s)	557, 845
BspMAI	CTGCAG	1 cut(s)	742
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	5 cut(s)	179, 459, 628, 838, 851
BspTI	CTTAAG	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	2 cut(s)	21, 792
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	3 cut(s)	188, 827, 847
BssMI	GATC	5 cut(s)	184, 464, 478, 633, 843
BssNI	GRCGYC	1 cut(s)	375
BssSI	CACGAG	4 cut(s)	162, 648, 714, 837
BssT1I	CCWWGG	1 cut(s)	847
Bst2BI	CACGAG	4 cut(s)	162, 648, 714, 837
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	50, 330, 733
BstACI	GRCGYC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	658
BstAPI	GCANNNNNTGC	2 cut(s)	140, 773
BstC8I	GCNNGC	3 cut(s)	343, 765, 774
BstDEI	CTNAG	1 cut(s)	797
BstF5I	GGATG	3 cut(s)	17, 178, 748
BstKTI	GATC	5 cut(s)	187, 467, 481, 636, 846
BstMBI	GATC	5 cut(s)	184, 464, 478, 633, 843
BstMWI	GCNNNNNNNGC	7 cut(s)	131, 140, 482, 520, 689, 769, 773
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	2 cut(s)	333, 738
BstV1I	GCAGC	8 cut(s)	47, 67, 112, 485, 497, 602, 744, 747
BstV2I	GAAGAC	2 cut(s)	399, 420
BstX2I	RGATCY	3 cut(s)	464, 633, 843
BstYI	RGATCY	3 cut(s)	464, 633, 843
Bsu36I	CCTNAGG	1 cut(s)	797
BtsCI	GGATG	3 cut(s)	17, 178, 748
BtsI	GCAGTG	2 cut(s)	533, 774
BtsIMutI	CAGTG	4 cut(s)	46, 533, 693, 774
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	3 cut(s)	343, 765, 774
CaiI	CAGNNNCTG	2 cut(s)	737, 773
Cfr10I	RCCGGY	1 cut(s)	725
CseI	GACGC	2 cut(s)	194, 383
Csp6I	GTAC	4 cut(s)	293, 729, 734, 852
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	8 cut(s)	115, 296, 318, 421, 439, 482, 545, 599
CviQI	GTAC	4 cut(s)	293, 729, 734, 852
DdeI	CTNAG	1 cut(s)	797
DpnI	GATC	5 cut(s)	186, 466, 480, 635, 845
DpnII	GATC	5 cut(s)	184, 464, 478, 633, 843
DraIII	CACNNNGTG	2 cut(s)	50, 52
DriI	GACNNNNNGTC	1 cut(s)	421
Eam1105I	GACNNNNNGTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	847
Eco57I	CTGAAG	2 cut(s)	432, 603
Eco81I	CCTNAGG	1 cut(s)	797
Eco88I	CYCGRG	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	847
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	8 cut(s)	118, 299, 321, 424, 442, 485, 548, 602
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FatI	CATG	8 cut(s)	114, 295, 317, 420, 438, 481, 544, 598
FauI	CCCGC	1 cut(s)	795
Fnu4HI	GCNGC	8 cut(s)	36, 56, 126, 474, 486, 591, 758, 761
FokI	GGATG	3 cut(s)	4, 185, 735
Fsp4HI	GCNGC	8 cut(s)	36, 56, 126, 474, 486, 591, 758, 761
FspBI	CTAG	1 cut(s)	848
GluI	GCNGC	8 cut(s)	36, 56, 126, 474, 486, 591, 758, 761
HapII	CCGG	2 cut(s)	553, 726
HgaI	GACGC	2 cut(s)	194, 383
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	8 cut(s)	118, 299, 321, 424, 442, 485, 548, 602
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	644, 791
HpaII	CCGG	2 cut(s)	553, 726
HphI	GGTGA	1 cut(s)	817
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	3 cut(s)	65, 184, 464
Hpy188III	TCNNGA	2 cut(s)	650, 716
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	2 cut(s)	115, 703
HpyCH4III	ACNGT	3 cut(s)	50, 330, 733
HpyCH4V	TGCA	8 cut(s)	55, 128, 134, 167, 356, 485, 706, 740
HpyF10VI	GCNNNNNNNGC	7 cut(s)	131, 140, 482, 520, 689, 769, 773
HpyF3I	CTNAG	1 cut(s)	797
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	8 cut(s)	118, 299, 321, 424, 442, 485, 548, 602
Kzo9I	GATC	5 cut(s)	184, 464, 478, 633, 843
Lsp1109I	GCAGC	8 cut(s)	47, 67, 112, 485, 497, 602, 744, 747
LweI	GCATC	5 cut(s)	26, 343, 354, 497, 692
MaeI	CTAG	1 cut(s)	848
MaeIII	GTNAC	1 cut(s)	531
MalI	GATC	5 cut(s)	186, 466, 480, 635, 845
MboI	GATC	5 cut(s)	184, 464, 478, 633, 843
MboII	GAAGA	3 cut(s)	404, 425, 509
MflI	RGATCY	3 cut(s)	464, 633, 843
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	5 cut(s)	67, 306, 525, 808, 878
MlyI	GAGTC	2 cut(s)	638, 785
MnlI	CCTC	8 cut(s)	104, 290, 646, 792, 822, 833, 867, 893
MseI	TTAA	4 cut(s)	29, 528, 659, 881
MspCI	CTTAAG	1 cut(s)	658
MspI	CCGG	2 cut(s)	553, 726
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	7 cut(s)	131, 140, 482, 520, 689, 769, 773
NdeII	GATC	5 cut(s)	184, 464, 478, 633, 843
NlaIII	CATG	8 cut(s)	118, 299, 321, 424, 442, 485, 548, 602
NlaIV	GGNNCC	2 cut(s)	557, 845
NmuCI	GTSAC	1 cut(s)	531
NspI	RCATGY	1 cut(s)	118
PkrI	GCNGC	8 cut(s)	37, 57, 127, 475, 487, 592, 759, 762
PleI	GAGTC	2 cut(s)	638, 785
PpsI	GAGTC	2 cut(s)	638, 785
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	557, 845
PstI	CTGCAG	1 cut(s)	742
PstNI	CAGNNNCTG	2 cut(s)	737, 773
PsuI	RGATCY	3 cut(s)	464, 633, 843
RsaI	GTAC	4 cut(s)	294, 730, 735, 853
RsaNI	GTAC	4 cut(s)	293, 729, 734, 852
SaqAI	TTAA	4 cut(s)	29, 528, 659, 881
SatI	GCNGC	8 cut(s)	36, 56, 126, 474, 486, 591, 758, 761
Sau3AI	GATC	5 cut(s)	184, 464, 478, 633, 843
SchI	GAGTC	2 cut(s)	638, 785
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	5 cut(s)	26, 343, 354, 497, 692
SfcI	CTRYAG	2 cut(s)	333, 738
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
Sse9I	AATT	5 cut(s)	67, 306, 525, 808, 878
SsiI	CCGC	2 cut(s)	118, 802
SspMI	CTAG	1 cut(s)	848
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	847
TaaI	ACNGT	3 cut(s)	50, 330, 733
TaqI	TCGA	2 cut(s)	254, 390
TasI	AATT	5 cut(s)	67, 306, 525, 808, 878
Tru1I	TTAA	4 cut(s)	29, 528, 659, 881
Tru9I	TTAA	4 cut(s)	29, 528, 659, 881
TscAI	CASTG	4 cut(s)	53, 540, 693, 774
TseFI	GTSAC	1 cut(s)	531
TseI	GCWGC	8 cut(s)	35, 55, 125, 473, 485, 590, 757, 760
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	4 cut(s)	53, 540, 693, 774
Vha464I	CTTAAG	1 cut(s)	658
XapI	RAATTY	1 cut(s)	808
XceI	RCATGY	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	847
XspI	CTAG	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.