Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014928

Physical Location & Seq

Genomic Coordinates Reverse (-)

29810751 .. 29814781

Gene Structure 4031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGCAACGAATATGATTACTTGTTCAAGCTCTTGCTAATTGGGGACTCCTCCGTCGGAAAATCGTGTTTGCTTGTCAGATTCGCTGACGATTCCTATGTGGACAGCTACGTCAGCACCATTGGAGTTGATTTTAAAATCAGGACTGTGGAGCTGGATGGGAAGACTGTCAAGCTGCAGATTTGGGATACTGCTGGACAAGAGCGATTCAGGACCATAACAAGCAGTTACTACCGTGGAGCGCATGGGATAATTATTGTCTATGATGTTACTGAGATGGAGAGCTTCAATAATGTCAAGCAGTGGCTGAATGAGATTGACAGATATGCAAACGAAAGTGTGTGCAAGCTTTTAGTGGGAAATAAATGTGATTTAGTTGAGAACAAGGTTGTTGACACGCAAACAGGAAAGACCTTGGTGACTCGAGACTTTCTCCATCTTTCCCTACCTTTCAGACCTGTTCAGCCCCTTGACAATCTACTCTTTCTGAATCCTTTACCTCAGGCAGTGCATGAGTGGAGCTTGTACTGTACTATCCTATTTGGGCTGCTAGCCAATTTCGATCTGAAAGTTATCAATGCTTTAGCTGATGAGCTTGGTATCCCTTTCCTCGAGACAAGTGCTAAAGACGCTATCAATGTTGAGCAGGCTTTCTTAACCATGGCTGGCGAGATAAAGAAAAAAATGGGCAACCAACCAACTGCTAACAAGTCAAGTGAAACTGTTCAAATGAAGGGGAATCCCATTCAGCAGAATAGCAATTGTTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006888 GO:0008092 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017022 GO:0030742 GO:0031090 GO:0031984 GO:0032029 GO:0032036 GO:0032588 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0080115 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

257

Amino Acids

28.87

Weight (kDa)

5.18

Isoelectric Point (pI)

26.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 129	5.2e-16	ADP-ribosylation factor family
Ras	PF00071	10 - 141	1.3e-54	Ras family
Roc	PF08477	10 - 124	1.3e-36	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 220	7.7e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11730
fragaria_vesca	FvH4_5g28100
malus_domestica	MD08G1244400.v1.1 MD15G1439100.v1.1
prunus_persica	Prupe.1G581900_v2.0.a1
pyrus_communis	pycom08g21200 pycom15g38720
rosa_chinensis	RchiOBHm_Chr7g0220361
rosa_laevigata	RLG00000002226
rosa_multiflora	Rmu_sc0000099.1_g000014
rosa_roxburghii	Rroxscaffold_3G00239450
rosa_rugosa	Rorug07G0193200
rosa_samantha	Rh7AG334600 Rh7CG352300 Rh7DG331300
rosa_wichuraiana	Rw7G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	53, 110
AfaI	GTAC	2 cut(s)	527, 532
AgsI	TTSAA	3 cut(s)	28, 289, 728
AluBI	AGCT	9 cut(s)	31, 108, 154, 175, 285, 349, 522, 587, 595
AluI	AGCT	9 cut(s)	31, 108, 154, 175, 285, 349, 522, 587, 595
Alw26I	GTCTC	2 cut(s)	420, 608
AlwNI	CAGNNNCTG	1 cut(s)	307
Ama87I	CYCGRG	2 cut(s)	423, 611
ApeKI	GCWGC	2 cut(s)	175, 547
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	430
AsuNHI	GCTAGC	1 cut(s)	550
AvaI	CYCGRG	2 cut(s)	423, 611
AvaII	GGWCC	1 cut(s)	213
AxyI	CCTNAGG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	162, 534
BccI	CCATC	3 cut(s)	152, 271, 444
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciVI	GTATCC	2 cut(s)	181, 611
BcoDI	GTCTC	2 cut(s)	420, 608
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	176
BfuI	GTATCC	2 cut(s)	181, 611
BisI	GCNGC	2 cut(s)	176, 548
BlsI	GCNGC	2 cut(s)	177, 549
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	2 cut(s)	423, 611
BmgT120I	GGNCC	1 cut(s)	213
BmtI	GCTAGC	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	417, 449
BsaJI	CCNNGG	3 cut(s)	235, 414, 660
Bse21I	CCTNAGG	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	235, 414, 660
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	264, 515
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	162, 534
BsiHKCI	CYCGRG	2 cut(s)	423, 611
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	420, 608
BsmFI	GGGAC	1 cut(s)	59
BsoBI	CYCGRG	2 cut(s)	423, 611
Bsp143I	GATC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	660
BspCNI	CTCAG	2 cut(s)	265, 514
BspMAI	CTGCAG	1 cut(s)	180
BspOI	GCTAGC	1 cut(s)	554
BssECI	CCNNGG	3 cut(s)	235, 414, 660
BssMI	GATC	1 cut(s)	562
BssT1I	CCWWGG	2 cut(s)	414, 660
Bst4CI	ACNGT	5 cut(s)	148, 169, 236, 530, 724
BstC8I	GCNNGC	4 cut(s)	347, 552, 648, 667
BstDEI	CTNAG	2 cut(s)	273, 501
BstDSI	CCRYGG	2 cut(s)	235, 660
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	2 cut(s)	420, 608
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 629
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	162, 534
BstV2I	GAAGAC	1 cut(s)	170
Bsu36I	CCTNAGG	1 cut(s)	501
BsuI	GTATCC	2 cut(s)	181, 611
BtgI	CCRYGG	2 cut(s)	235, 660
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	2 cut(s)	308, 513
BtsIMutI	CAGTG	2 cut(s)	308, 513
Cac8I	GCNNGC	4 cut(s)	347, 552, 648, 667
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	213
CseI	GACGC	1 cut(s)	638
Csp6I	GTAC	2 cut(s)	526, 531
CspCI	CAANNNNNGTGG	1 cut(s)	748
CviAII	CATG	3 cut(s)	245, 512, 661
CviQI	GTAC	2 cut(s)	526, 531
DdeI	CTNAG	2 cut(s)	273, 501
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
DraI	TTTAAA	1 cut(s)	136
DrdI	GACNNNNNNGTC	2 cut(s)	53, 110
DseDI	GACNNNNNNGTC	2 cut(s)	53, 110
Eco130I	CCWWGG	2 cut(s)	414, 660
Eco47I	GGWCC	1 cut(s)	213
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	2 cut(s)	423, 611
EcoT14I	CCWWGG	2 cut(s)	414, 660
ErhI	CCWWGG	2 cut(s)	414, 660
FaeI	CATG	3 cut(s)	248, 515, 664
FaiI	YATR	8 cut(s)	15, 99, 218, 246, 264, 327, 513, 662
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	244, 511, 660
Fnu4HI	GCNGC	2 cut(s)	176, 548
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	176, 548
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	176, 548
HgaI	GACGC	1 cut(s)	638
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	248, 515, 664
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	7 cut(s)	47, 81, 92, 207, 421, 490, 739
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	103, 394
Hpy188I	TCNGA	5 cut(s)	59, 80, 455, 489, 567
Hpy188III	TCNNGA	4 cut(s)	142, 211, 425, 613
Hpy8I	GTNNAC	2 cut(s)	103, 394
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	727
HpyCH4III	ACNGT	5 cut(s)	148, 169, 236, 530, 724
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	178, 329, 345, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 629
HpyF3I	CTNAG	2 cut(s)	273, 501
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	248, 515, 664
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	562
LmnI	GCTCC	3 cut(s)	151, 239, 519
LpnPI	CCDG	9 cut(s)	127, 140, 180, 196, 390, 471, 488, 632, 651
Lsp1109I	GCAGC	2 cut(s)	162, 534
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	227, 268, 418
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	1 cut(s)	175
MfeI	CAATTG	1 cut(s)	760
MluCI	AATT	4 cut(s)	39, 252, 556, 760
MlyI	GAGTC	2 cut(s)	41, 415
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	61, 510, 620
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	2 cut(s)	135, 656
MunI	CAATTG	1 cut(s)	760
MwoI	GCNNNNNNNGC	2 cut(s)	114, 629
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	1 cut(s)	562
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	3 cut(s)	248, 515, 664
NmuCI	GTSAC	1 cut(s)	418
PaeR7I	CTCGAG	2 cut(s)	423, 611
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	5 cut(s)	81, 92, 207, 490, 739
PkrI	GCNGC	2 cut(s)	177, 549
PleI	GAGTC	2 cut(s)	41, 415
PpsI	GAGTC	2 cut(s)	41, 415
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	307
RsaI	GTAC	2 cut(s)	527, 532
RsaNI	GTAC	2 cut(s)	526, 531
SaqAI	TTAA	2 cut(s)	135, 656
SatI	GCNGC	2 cut(s)	176, 548
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	2 cut(s)	41, 415
SfcI	CTRYAG	1 cut(s)	176
Sfr274I	CTCGAG	2 cut(s)	423, 611
SinI	GGWCC	1 cut(s)	213
SlaI	CTCGAG	2 cut(s)	423, 611
SmlI	CTYRAG	2 cut(s)	423, 611
SmoI	CTYRAG	2 cut(s)	423, 611
Sse9I	AATT	4 cut(s)	39, 252, 556, 760
SspMI	CTAG	1 cut(s)	551
StyI	CCWWGG	2 cut(s)	414, 660
TaaI	ACNGT	5 cut(s)	148, 169, 236, 530, 724
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	424, 561, 612
TasI	AATT	4 cut(s)	39, 252, 556, 760
TatI	WGTACW	2 cut(s)	525, 530
TfiI	GAWTC	5 cut(s)	81, 92, 207, 490, 739
Tru1I	TTAA	2 cut(s)	135, 656
Tru9I	TTAA	2 cut(s)	135, 656
TscAI	CASTG	2 cut(s)	308, 513
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	175, 547
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	1 cut(s)	746
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	308, 513
VpaK11BI	GGWCC	1 cut(s)	213
XhoI	CTCGAG	2 cut(s)	423, 611
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.