Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014928

Physical Location & Seq

Genomic Coordinates Reverse (-)

19318294 .. 19322006

Gene Structure 3713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGCAACGAATATGATTATCTCTTCAAGCTCTTGCTCATCGGGGACTCCTCCGTCGGAAAATCCTGTTTGCTTGTTCGATTCGCTGACGATTCCTATGTGGACAGCTACGTTAGCACCATTGGAGTTGATTTCAAAATCAGGACGGTGGAGCTGGATGGGAAGACAGTCAAGCTCCAGATTTGGGACACTGCTGGACAAGAGCGATTCAGGACTATAACAAGCAGTTACTACCGAGGAGCGCATGGAATAATTATTGTCTATGATGTTACTGAGATGGAGAGCTTCAATAATGTCAAGCAGTGGCTGAACGAGATTGACAGATATGCAAACGAAAGTGTGTGCAAGCTTTTAGTGGGAAATAAATGCGATTTAGTCGAGAACAAGGTTGTTGACACTCAAACTGGAAAGGCTTTAGCTGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACGCTATCAATGTTGAGCAGGCTTTCTTAACCATGGCTGGCGAGATCAAGAAAAAAATGGGCAACCAACCAACTGCAAACAAGTCAAGTGAAACTGTTCAAATGAAGGGGAATCCCATTCAGCAGAGTAGCAATTGTTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006888 GO:0008092 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017022 GO:0030742 GO:0031090 GO:0031984 GO:0032029 GO:0032036 GO:0032588 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0080115 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

202

Amino Acids

22.38

Weight (kDa)

5.02

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 130	1.9e-16	ADP-ribosylation factor family
Ras	PF00071	10 - 170	2.9e-67	Ras family
Roc	PF08477	10 - 124	6.9e-37	Ras of Complex, Roc, domain of DAPkinase
Gtr1_RagA	PF04670	10 - 130	6e-06	Gtr1/RagA G protein conserved region
GTP_EFTU	PF00009	43 - 164	6.2e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11730
fragaria_vesca	FvH4_5g28100
malus_domestica	MD08G1244400.v1.1 MD15G1439100.v1.1
prunus_persica	Prupe.1G581900_v2.0.a1
pyrus_communis	pycom08g21200 pycom15g38720
rosa_chinensis	RchiOBHm_Chr7g0220361
rosa_laevigata	RLG00000002226
rosa_multiflora	Rmu_sc0000099.1_g000014
rosa_roxburghii	Rroxscaffold_3G00239450
rosa_rugosa	Rorug07G0193200
rosa_samantha	Rh7AG334600 Rh7CG352300 Rh7DG331300
rosa_wichuraiana	Rw7G028250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	4 cut(s)	28, 136, 289, 560
AluBI	AGCT	8 cut(s)	31, 108, 154, 175, 285, 349, 419, 427
AluI	AGCT	8 cut(s)	31, 108, 154, 175, 285, 349, 419, 427
Alw26I	GTCTC	1 cut(s)	440
AlwNI	CAGNNNCTG	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	170
BccI	CCATC	2 cut(s)	152, 271
BciVI	GTATCC	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	235, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	235, 492
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	2 cut(s)	40, 252
BslFI	GGGAC	2 cut(s)	59, 200
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	2 cut(s)	59, 200
Bsp143I	GATC	1 cut(s)	504
Bsp19I	CCATGG	1 cut(s)	492
BspCNI	CTCAG	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	235, 492
BssMI	GATC	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	148, 169, 556
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	3 cut(s)	347, 480, 499
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	507
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	504
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 461
BstV2I	GAAGAC	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	443
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	2 cut(s)	189, 308
BtsIMutI	CAGTG	2 cut(s)	189, 308
Cac8I	GCNNGC	3 cut(s)	347, 480, 499
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	1 cut(s)	244
CseI	GACGC	1 cut(s)	470
CspCI	CAANNNNNGTGG	1 cut(s)	580
CviAII	CATG	2 cut(s)	245, 493
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	248, 496
FaiI	YATR	7 cut(s)	15, 99, 218, 246, 264, 327, 494
FaqI	GGGAC	2 cut(s)	59, 200
FatI	CATG	2 cut(s)	244, 492
FokI	GGATG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	248, 496
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	5 cut(s)	47, 81, 92, 207, 571
Hpy166II	GTNNAC	2 cut(s)	103, 394
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	5 cut(s)	142, 178, 211, 379, 508
Hpy8I	GTNNAC	2 cut(s)	103, 394
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	559
HpyCH4III	ACNGT	3 cut(s)	148, 169, 556
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	329, 345, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 461
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	248, 496
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	504
LmnI	GCTCC	3 cut(s)	151, 180, 239
LpnPI	CCDG	9 cut(s)	79, 127, 140, 180, 191, 196, 390, 464, 483
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	227, 268
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	2 cut(s)	16, 175
MfeI	CAATTG	1 cut(s)	592
MluCI	AATT	2 cut(s)	252, 592
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	61, 230
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	1 cut(s)	488
MunI	CAATTG	1 cut(s)	592
MwoI	GCNNNNNNNGC	2 cut(s)	114, 461
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	1 cut(s)	504
NlaIII	CATG	2 cut(s)	248, 496
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	4 cut(s)	81, 92, 207, 571
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PstNI	CAGNNNCTG	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	488
Sau3AI	GATC	1 cut(s)	504
SchI	GAGTC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	252, 592
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	3 cut(s)	148, 169, 556
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	79, 378
TasI	AATT	2 cut(s)	252, 592
TfiI	GAWTC	4 cut(s)	81, 92, 207, 571
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	2 cut(s)	196, 308
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	196, 308
XmnI	GAANNNNTTC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.